Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 0.0e+00 2444.8 1217 100.0
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 5.8e-106 390.2 1332 30.5
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 3.8e-105 387.5 1299 30.5
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 3.2e-104 384.4 1274 30.0
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 2.1e-103 381.7 1321 29.1
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 9.0e-99 366.3 1296 29.9
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 3.8e-97 360.9 1315 28.0
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 1.1e-96 359.4 1307 29.8
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 2.5e-96 358.2 1287 28.1
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 2.7e-95 354.8 1309 29.1
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 2.7e-95 354.8 1306 30.2
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 3.9e-94 350.9 1289 29.6
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.7e-92 345.5 1291 30.3
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.5e-90 337.4 1306 28.9
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 7.7e-90 336.7 1241 29.2
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 7.7e-90 336.7 1293 27.6
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.9e-88 332.0 1319 28.5
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 1.6e-87 328.9 1252 28.5
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 2.1e-87 328.6 1275 29.3
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.0e-86 326.2 1280 29.9
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 4.4e-85 320.9 1278 29.7
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 6.3e-84 317.0 1282 29.7
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 6.3e-84 317.0 1279 27.3
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.4e-83 315.1 1282 29.4
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.8e-81 307.8 1270 29.0
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.5e-80 305.1 1360 27.4
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.5e-77 295.8 1305 27.6
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.5e-77 295.8 1295 28.4
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.9e-74 283.9 1239 28.5
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.2e-72 277.7 1283 26.5
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.2e-72 277.7 1279 26.2
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 5.2e-70 270.8 1288 26.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 5.2e-70 270.8 1280 26.2
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.1e-67 261.2 1431 25.8
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.5e-64 251.9 1241 26.3
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 9.4e-64 250.0 1296 25.2
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.6e-63 249.2 1288 25.9
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 4.1e-59 234.6 1257 25.7
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.6e-58 232.6 1246 25.4
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.5e-58 231.5 1239 24.9
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.0e-54 218.4 744 29.7
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.2e-53 216.5 1291 25.6
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.6e-53 215.3 1268 25.3
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 5.7e-53 214.2 974 26.3
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 6.3e-52 210.7 1070 25.1
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 4.1e-51 208.0 1279 25.6
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 7.0e-51 207.2 1285 25.8
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 1.2e-50 206.5 1291 25.7
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 2.7e-50 205.3 1284 26.0
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 1.0e-49 203.4 1275 25.6
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.9e-49 201.8 1305 24.8
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 8.6e-49 200.3 1278 25.6
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 5.6e-48 197.6 1247 25.5
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 6.8e-46 190.7 1030 25.6
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.2e-45 189.9 1252 25.7
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.7e-44 186.0 1309 24.4
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.4e-43 183.0 564 29.3
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 3.2e-43 181.8 1286 24.0
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.2e-42 179.9 1270 23.9
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 4.6e-42 177.9 359 34.0
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 6.0e-42 177.6 1242 24.6
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.0e-41 176.8 772 27.3
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.7e-41 176.0 1303 22.9
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 6.6e-41 174.1 1264 24.6
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 5.6e-40 171.0 1262 23.7
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 6.2e-39 167.5 1245 23.9
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 3.1e-38 165.2 1245 23.9
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 4.0e-38 164.9 1265 23.2
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 8.3e-36 157.1 1245 24.3
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 3.2e-35 155.2 1310 23.6
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.3e-32 145.2 1253 23.1
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 2.1e-31 142.5 1240 22.3
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 3.6e-31 141.7 1250 23.6
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 4.7e-31 141.4 1246 23.2
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 1.4e-30 139.8 1275 23.3
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 2.3e-30 139.0 1230 22.7
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.5e-29 136.3 1267 24.0
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 4.4e-29 134.8 1248 24.3
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 5.8e-29 134.4 1278 23.1
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.9e-29 133.7 1270 23.6
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.7e-28 132.9 1275 23.8
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.4e-28 131.0 1292 23.2
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.1e-27 130.2 1279 21.7
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.9e-27 129.4 1247 24.1
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 3.2e-27 128.6 1250 23.6
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.2e-27 127.1 1290 22.2
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 9.2e-27 127.1 1278 23.0
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.1e-26 125.9 1257 22.5
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 5.1e-25 121.3 1296 22.8
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 1.6e-23 116.3 1286 22.7
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.1e-22 113.6 1197 23.3
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 2.4e-22 112.5 725 24.8
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 6.8e-22 110.9 1306 22.7
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 8.9e-22 110.5 654 25.5
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 8.9e-22 110.5 593 25.5
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 2.0e-21 109.4 1231 23.5
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 5.8e-21 107.8 1238 22.9
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.7e-20 106.3 1262 23.3
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.9e-20 104.8 1199 21.7
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 8.4e-20 104.0 1305 22.4
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 1.4e-19 103.2 1183 22.6
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 1.4e-19 103.2 1303 22.3
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 5.4e-19 101.3 225 33.3
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 9.3e-19 100.5 1237 23.8
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 9.3e-19 100.5 1246 22.5
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 1.6e-18 99.8 1187 23.3
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.7e-18 99.0 1243 23.5
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 4.6e-18 98.2 1243 23.4
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 1.0e-17 97.1 1243 23.4
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 1.7e-17 96.3 1235 22.2
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-16 93.6 298 28.9
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-16 93.6 306 30.7
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 1.1e-16 93.6 306 30.7
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.5e-16 93.2 305 30.8
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.5e-16 93.2 305 30.8
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 7.3e-16 90.9 306 30.1
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 6.2e-15 87.8 430 26.3
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 6.2e-15 87.8 97 44.3
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 1.4e-14 86.7 298 28.5
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.8e-14 86.3 1234 20.8
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 2.4e-14 85.9 91 47.3
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 4.0e-14 85.1 102 39.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 9.0e-14 84.0 437 23.3
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.5e-13 83.2 78 46.2
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.5e-13 83.2 164 32.3
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 3.4e-13 82.0 713 23.7
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 3.4e-13 82.0 96 40.6
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 9.9e-13 80.5 714 23.0
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 9.9e-13 80.5 85 44.7
Aqoxy7G01578 Aquilegia oxysepala HOM05D065736 ORTHO05D038511 1.3e-12 80.1 366 25.1
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.7e-12 79.7 279 27.6
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 1.7e-12 79.7 305 25.9
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.9e-12 79.0 331 26.9
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.9e-12 79.0 174 32.2
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 6.4e-12 77.8 81 49.4
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 1.1e-11 77.0 99 43.4
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.1e-11 77.0 482 24.7
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-11 76.6 482 24.7
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-11 76.3 451 24.4
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.4e-11 75.9 74 50.0
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 3.2e-11 75.5 431 25.3
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 4.2e-11 75.1 521 25.7
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 4.2e-11 75.1 299 30.1
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 5.4e-11 74.7 92 40.2
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 7.1e-11 74.3 1037 22.3
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 7.1e-11 74.3 123 36.6
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 9.3e-11 73.9 1325 22.3
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 9.3e-11 73.9 69 44.9
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.2e-10 73.6 312 28.5
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 2.1e-10 72.8 85 38.8
Sc09g0009160 Simmondsia chinensis HOM05D012164 ORTHO05D003767 2.7e-10 72.4 1260 22.6
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 1.0e-09 70.5 91 41.8
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.3e-09 70.1 464 25.6
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 3.0e-09 68.9 703 23.3
Lsat_1_v5_gn_4_94561 Lactuca sativa HOM05D004021 ORTHO05D003767 6.6e-09 67.8 102 40.2
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 6.6e-09 67.8 88 42.0
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.5e-08 66.6 383 25.1
FAN13G2039 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-08 66.2 365 25.5
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 2.5e-08 65.9 393 26.2
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 3.3e-08 65.5 160 31.9
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 3.3e-08 65.5 86 41.9
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 1.3e-07 63.5 89 43.8
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 4.8e-07 61.6 95 37.9
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 6.2e-07 61.2 276 24.3
FAN20G0872 Fragaria x ananassa HOM05D004021 ORTHO05D003767 8.1e-07 60.8 319 26.3
VMungo0647G2380 Vigna mungo HOM05D058389 ORTHO05D003767 1.8e-06 59.7 362 21.8
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.4e-06 59.3 58 44.8
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 2.4e-06 59.3 114 30.7
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.4e-06 59.3 80 36.2
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 3.1e-06 58.9 61 41.0


User provided reference genes

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