Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02884 Eucalyptus grandis HOM05D003277 ORTHO05D003275 4.9e-63 244.2 114 100.0
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 9.0e-17 90.5 100 51.0
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.9e-14 82.8 116 44.0
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.9e-14 82.8 116 44.0
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.4e-14 81.3 103 48.5
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.4e-14 81.3 103 48.5
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.4e-14 81.3 103 48.5
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 5.4e-14 81.3 95 46.3
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 1.6e-13 79.7 98 43.9
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 2.1e-13 79.3 101 49.5
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 2.7e-13 79.0 98 45.9
Potri.006G244200 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.5e-13 78.6 95 46.3
QL12p026142 Quercus lobata HOM05D003277 ORTHO05D003275 4.6e-13 78.2 99 48.5
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 6.0e-13 77.8 98 44.9
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 1.3e-12 76.6 102 45.1
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 1.3e-12 76.6 102 46.1
TPR.G27852 Trifolium pratense HOM05D003277 ORTHO05D003275 1.3e-12 76.6 116 40.5
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 2.3e-12 75.9 98 44.9
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 3.0e-12 75.5 100 46.0
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 3.0e-12 75.5 104 45.2
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 5.1e-12 74.7 109 45.0
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 6.7e-12 74.3 104 44.2
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-11 73.6 104 44.2
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 1.1e-11 73.6 98 40.8
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 1.9e-11 72.8 111 43.2
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 2.5e-11 72.4 124 36.3
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.3e-11 72.0 105 43.8
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 4.3e-11 71.6 60 56.7
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 7.4e-11 70.9 71 50.7
Medtr3g109430 Medicago truncatula HOM05D003277 ORTHO05D003275 7.4e-11 70.9 94 45.7
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.6e-10 69.7 100 41.0
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 1.6e-10 69.7 107 44.9
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.6e-10 69.7 70 48.6
Psat0s1478g0280 Pisum sativum HOM05D003277 ORTHO05D003275 2.1e-10 69.3 76 48.7
Potri.018G036300 Populus trichocarpa HOM05D003277 ORTHO05D003275 2.1e-10 69.3 60 55.0
Migut.A00248 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.8e-10 68.9 99 43.4
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 6.2e-10 67.8 64 53.1
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 6.2e-10 67.8 61 50.8
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 6.2e-10 67.8 105 41.0
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 6.2e-10 67.8 69 46.4
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 8.1e-10 67.4 88 45.5
Sed0006476 Sechium edule HOM05D003277 ORTHO05D003275 1.1e-09 67.0 99 41.4
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 1.4e-09 66.6 102 40.2
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 1.4e-09 66.6 82 42.7
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 1.4e-09 66.6 103 41.7
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 1.4e-09 66.6 107 38.3
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.8e-09 66.2 99 41.4
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 1.8e-09 66.2 98 43.9
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.4e-09 65.9 59 50.8
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.0e-09 65.1 59 49.2
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.0e-09 65.1 65 47.7
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 4.0e-09 65.1 104 36.5
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 4.0e-09 65.1 60 56.7
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 4.0e-09 65.1 111 38.7
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 4.0e-09 65.1 60 51.7
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 5.3e-09 64.7 59 49.2
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 5.3e-09 64.7 82 41.5
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 6.9e-09 64.3 104 40.4
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 9.0e-09 63.9 59 50.8
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-08 63.5 61 50.8
THA.LOC104803771 Tarenaya hassleriana HOM05D012534 ORTHO05D003275 1.2e-08 63.5 88 39.8
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.0e-08 62.8 71 40.8
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 2.0e-08 62.8 59 54.2
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 2.0e-08 62.8 70 47.1
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 2.6e-08 62.4 83 41.0
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 2.6e-08 62.4 60 48.3
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 2.6e-08 62.4 101 39.6
Glyma.06G080800 Glycine max HOM05D003277 ORTHO05D003275 2.6e-08 62.4 111 38.7
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 2.6e-08 62.4 61 52.5
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 2.6e-08 62.4 59 50.8
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 3.4e-08 62.0 95 38.9
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 3.4e-08 62.0 73 42.5
CiPaw.08G022600 Carya illinoinensis HOM05D003277 ORTHO05D003275 4.5e-08 61.6 105 39.0
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 4.5e-08 61.6 102 38.2
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 5.8e-08 61.2 95 40.0
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 5.8e-08 61.2 61 50.8
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 5.8e-08 61.2 70 42.9
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 5.8e-08 61.2 70 42.9
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.6e-08 60.8 63 47.6
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.6e-08 60.8 63 47.6
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 9.9e-08 60.5 103 39.8
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 9.9e-08 60.5 99 39.4
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 9.9e-08 60.5 59 50.8
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 9.9e-08 60.5 59 50.8
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 9.9e-08 60.5 59 52.5
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 1.3e-07 60.1 62 48.4
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 1.7e-07 59.7 103 39.8
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.7e-07 59.7 63 47.6
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.7e-07 59.7 72 48.6
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 2.2e-07 59.3 56 58.9
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 2.2e-07 59.3 101 38.6
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 2.9e-07 58.9 106 35.8
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 2.9e-07 58.9 59 52.5
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.8e-07 58.5 99 40.4
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 3.8e-07 58.5 56 58.9
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.8e-07 58.5 95 37.9
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 3.8e-07 58.5 101 40.6
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.8e-07 58.5 101 40.6
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 3.8e-07 58.5 59 52.5
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 4.9e-07 58.2 60 46.7
AUR62032402 Chenopodium quinoa HOM05D000009 ORTHO05D000008 6.4e-07 57.8 34 67.6
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 6.4e-07 57.8 59 57.6
Glyma.09G189600 Glycine max HOM05D003277 ORTHO05D003275 8.4e-07 57.4 59 44.1
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 8.4e-07 57.4 60 48.3
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 8.4e-07 57.4 63 52.4
Medtr8g083490 Medicago truncatula HOM05D003277 ORTHO05D003275 1.1e-06 57.0 60 48.3
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.1e-06 57.0 85 41.2
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.1e-06 57.0 101 36.6
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.1e-06 57.0 59 49.2
Manes.16G117100 Manihot esculenta HOM05D003277 ORTHO05D003275 1.4e-06 56.6 102 36.3
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 1.4e-06 56.6 67 49.3
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 1.4e-06 56.6 59 50.8
vmacro20693 Vaccinium macrocarpon HOM05D010253 ORTHO05D015231 1.4e-06 56.6 86 38.4
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 2.4e-06 55.8 102 38.2
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 3.2e-06 55.5 100 38.0
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 3.2e-06 55.5 73 45.2
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 3.2e-06 55.5 109 31.2
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.2e-06 55.5 73 43.8
ATR1120G074 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.2e-06 55.1 34 70.6
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.2e-06 55.1 56 53.6
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.2e-06 55.1 107 36.4
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 5.5e-06 54.7 71 43.7
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 5.5e-06 54.7 68 48.5
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 5.5e-06 54.7 61 47.5
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 7.1e-06 54.3 110 33.6
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 7.1e-06 54.3 72 43.1
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 7.1e-06 54.3 65 44.6
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 7.1e-06 54.3 60 48.3
Psat6g033640 Pisum sativum HOM05D003277 ORTHO05D003275 7.1e-06 54.3 77 42.9
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 9.3e-06 53.9 59 52.5
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 9.3e-06 53.9 103 36.9
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 9.3e-06 53.9 103 36.9
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 9.3e-06 53.9 102 37.3
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 9.3e-06 53.9 56 51.8
Lsat_1_v5_gn_6_11260 Lactuca sativa HOM05D003277 ORTHO05D003275 9.3e-06 53.9 101 39.6
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 9.3e-06 53.9 58 48.3
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 9.3e-06 53.9 61 45.9
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 9.3e-06 53.9 37 70.3


User provided reference genes

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