Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.3e-149 532.3 290 100.0
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 3.5e-49 199.5 289 46.0
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.7e-48 197.2 303 46.9
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 6.2e-46 188.7 297 48.1
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.5e-44 184.1 284 45.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.8e-44 182.2 284 44.7
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.6e-41 174.1 299 43.8
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 7.8e-41 171.8 292 40.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.3e-40 171.0 287 41.8
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 1.7e-40 170.6 299 42.8
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 3.3e-39 166.4 293 41.6
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 9.5e-39 164.9 294 41.5
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.2e-38 164.5 286 39.9
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 4.7e-38 162.5 306 39.9
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 8.1e-38 161.8 295 39.0
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 8.9e-37 158.3 286 41.6
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.2e-36 157.9 287 38.7
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 9.8e-36 154.8 299 38.5
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.7e-35 152.9 287 39.0
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 2.4e-34 150.2 285 38.6
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 2.7e-33 146.7 292 37.3
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.0e-32 144.8 298 38.9
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 1.3e-32 144.4 294 38.1
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 2.3e-32 143.7 298 37.6
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.1e-31 141.4 300 38.3
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 3.3e-31 139.8 329 38.3
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 3.3e-31 139.8 292 37.0
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.8e-30 136.7 295 38.0
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.8e-30 136.7 285 41.4
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.8e-29 134.0 301 36.9
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.8e-29 134.0 296 36.8
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 5.2e-29 132.5 306 40.5
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 5.2e-29 132.5 271 38.7
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.5e-28 131.0 283 36.0
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.6e-28 130.2 284 38.7
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 4.4e-28 129.4 297 36.4
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.7e-27 127.5 282 37.9
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 4.9e-27 125.9 296 35.8
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 6.4e-27 125.6 284 38.4
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 1.4e-26 124.4 283 35.7
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 5.4e-26 122.5 290 36.6
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 9.2e-26 121.7 284 38.0
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.6e-25 120.9 292 38.0
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 2.7e-25 120.2 300 36.3
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 7.8e-25 118.6 313 33.5
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 5.1e-24 115.9 295 35.6
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 5.1e-24 115.9 283 37.5
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 5.1e-24 115.9 274 36.9
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.6e-24 115.5 292 35.3
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 6.6e-24 115.5 273 37.0
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.9e-23 114.0 288 37.5
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 3.3e-23 113.2 300 36.0
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.3e-23 113.2 296 34.1
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 5.6e-23 112.5 298 35.6
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 5.6e-23 112.5 293 35.5
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 7.3e-23 112.1 299 35.1
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 9.6e-23 111.7 287 33.8
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.2e-22 111.3 295 34.6
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.2e-22 111.3 295 34.6
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.2e-22 111.3 295 34.9
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.2e-22 111.3 288 35.1
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.2e-22 111.3 258 38.8
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.6e-22 110.9 291 32.3
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 2.8e-22 110.2 292 33.2
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 3.6e-22 109.8 288 35.1
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 4.7e-22 109.4 281 32.7
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 6.2e-22 109.0 286 35.0
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 6.2e-22 109.0 294 32.7
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 8.1e-22 108.6 306 33.7
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 8.1e-22 108.6 354 30.8
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.1e-21 108.2 292 34.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 1.4e-21 107.8 285 35.4
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 2.4e-21 107.1 130 49.2
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 3.1e-21 106.7 281 34.5
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 6.9e-21 105.5 297 34.3
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 8.9e-21 105.1 354 30.8
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.2e-20 104.8 292 33.2
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.5e-20 104.4 299 32.8
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.5e-20 104.4 299 33.8
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 3.4e-20 103.2 294 32.7
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 2.9e-19 100.1 296 33.4
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 2.9e-19 100.1 296 33.4
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 6.4e-19 99.0 281 34.2
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 8.4e-19 98.6 289 32.5
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 8.4e-19 98.6 296 31.4
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 3.2e-18 96.7 289 31.8
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 3.2e-18 96.7 293 34.1
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 4.2e-18 96.3 286 32.2
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 1.2e-17 94.7 287 30.7
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.2e-17 94.7 292 32.9
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.2e-17 94.7 285 33.0
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.6e-17 94.4 288 33.0
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.1e-17 94.0 299 30.4
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 3.5e-17 93.2 280 30.7
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 4.6e-17 92.8 281 31.7
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 4.6e-17 92.8 285 32.3
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 4.6e-17 92.8 144 45.1
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 6.0e-17 92.4 281 31.0
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.7e-16 90.9 338 29.6
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 1.7e-16 90.9 197 37.6
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 5.1e-16 89.4 295 34.2
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 5.1e-16 89.4 284 31.7
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 4.3e-15 86.3 297 29.6
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 4.3e-15 86.3 296 30.7
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 7.3e-15 85.5 181 37.0
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 7.3e-15 85.5 287 29.6
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 7.3e-15 85.5 290 32.4
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 9.6e-15 85.1 276 31.9
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 1.6e-14 84.3 176 35.8
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 3.6e-14 83.2 293 29.0
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 3.6e-14 83.2 304 31.2
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.8e-14 82.8 291 33.0
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 4.8e-14 82.8 289 32.9
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 6.2e-14 82.4 196 33.7
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.1e-13 81.6 297 31.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 1.4e-13 81.3 283 30.0
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 1.4e-13 81.3 300 31.3
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 1.4e-13 81.3 312 30.1
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.4e-13 80.5 285 29.8
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 2.4e-13 80.5 310 31.9
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 6.9e-13 79.0 303 32.0
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.2e-12 78.2 147 36.1
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.2e-12 78.2 301 30.6
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.0e-12 77.4 301 29.6
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 3.4e-12 76.6 294 31.6
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 5.8e-12 75.9 310 29.0
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 5.8e-12 75.9 293 29.4
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 7.6e-12 75.5 312 28.5
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 7.6e-12 75.5 307 28.7
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.3e-11 74.7 294 30.3
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.7e-11 74.3 284 31.3
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.9e-11 73.6 221 31.7
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 6.4e-11 72.4 286 30.1
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 8.4e-11 72.0 284 31.0
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 8.4e-11 72.0 276 33.0
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 8.4e-11 72.0 154 35.7
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.1e-10 71.6 285 29.8
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.1e-10 71.6 307 30.6
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.4e-10 71.2 286 33.6
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 3.2e-10 70.1 282 28.7
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 3.2e-10 70.1 291 29.9
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 4.2e-10 69.7 292 29.5
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 4.2e-10 69.7 262 27.9
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 5.4e-10 69.3 282 28.7
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 7.1e-10 68.9 304 27.3
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 9.3e-10 68.6 225 30.7
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 9.3e-10 68.6 286 29.7
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 1.2e-09 68.2 279 29.7
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 2.1e-09 67.4 284 30.3
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.1e-09 67.4 289 31.8
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 2.1e-09 67.4 269 27.9
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 2.7e-09 67.0 160 35.6
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 3.5e-09 66.6 284 31.3
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 6.0e-09 65.9 280 24.6
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.3e-08 64.7 298 27.5
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.3e-08 64.7 309 29.1
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.3e-08 64.7 283 29.0
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.8e-08 64.3 281 29.2
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.8e-08 64.3 298 27.9
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.9e-08 63.2 301 27.9
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 2.5e-07 60.5 171 30.4
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.5e-07 60.5 285 29.1
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 3.3e-07 60.1 133 35.3
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 4.3e-07 59.7 283 28.3
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 4.3e-07 59.7 275 29.5
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 5.6e-07 59.3 283 28.3
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 1.3e-06 58.2 292 29.8
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 1.6e-06 57.8 302 29.1
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 8.1e-06 55.5 280 28.6
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 8.1e-06 55.5 158 32.3


User provided reference genes

Program Settings