Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 3.2e-50 201.4 101 100.0
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 7.7e-20 100.5 68 76.5
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 3.8e-19 98.2 68 73.5
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 5.0e-19 97.8 64 75.0
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 8.5e-19 97.1 64 73.4
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 8.5e-19 97.1 64 73.4
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 8.5e-19 97.1 64 73.4
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 1.1e-18 96.7 64 73.4
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.4e-18 96.3 67 71.6
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 1.9e-18 95.9 65 69.2
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 3.2e-18 95.1 68 69.1
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 3.2e-18 95.1 66 71.2
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 3.2e-18 95.1 66 71.2
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 4.2e-18 94.7 70 65.7
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 5.5e-18 94.4 64 73.4
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 5.5e-18 94.4 63 73.0
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 7.2e-18 94.0 64 73.4
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 7.2e-18 94.0 64 73.4
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 7.2e-18 94.0 64 71.9
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 9.4e-18 93.6 64 71.9
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 9.4e-18 93.6 64 71.9
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 2.1e-17 92.4 68 67.6
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 2.1e-17 92.4 70 64.3
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 4.7e-17 91.3 64 70.3
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 4.7e-17 91.3 64 71.9
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 6.1e-17 90.9 67 68.7
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 6.1e-17 90.9 64 68.8
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 7.9e-17 90.5 64 70.3
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 7.9e-17 90.5 67 68.7
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 7.9e-17 90.5 67 68.7
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 7.9e-17 90.5 64 68.8
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 1.4e-16 89.7 67 68.7
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 2.3e-16 89.0 63 68.3
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 3.9e-16 88.2 63 66.7
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 5.1e-16 87.8 64 68.8
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 6.7e-16 87.4 66 63.6
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 6.7e-16 87.4 68 63.2
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.1e-15 86.7 66 63.6
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 1.1e-15 86.7 64 62.5
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 1.5e-15 86.3 64 62.5
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 2.0e-15 85.9 65 63.1
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 2.0e-15 85.9 66 60.6
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 2.6e-15 85.5 67 64.2
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 2.6e-15 85.5 64 68.8
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 3.3e-15 85.1 63 63.5
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 3.3e-15 85.1 71 59.2
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 3.3e-15 85.1 67 62.7
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 4.4e-15 84.7 64 65.6
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 4.4e-15 84.7 71 59.2
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 4.4e-15 84.7 71 57.7
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 4.4e-15 84.7 71 57.7
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 4.4e-15 84.7 71 59.2
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 5.7e-15 84.3 65 63.1
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 5.7e-15 84.3 71 57.7
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 7.4e-15 84.0 64 65.6
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 9.7e-15 83.6 71 57.7
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 1.7e-14 82.8 64 62.5
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 1.7e-14 82.8 55 72.7
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 2.2e-14 82.4 65 61.5
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 2.8e-14 82.0 64 60.9
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 4.8e-14 81.3 71 57.7
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 4.8e-14 81.3 69 58.0
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 4.8e-14 81.3 69 58.0
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 4.8e-14 81.3 64 65.6
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 4.8e-14 81.3 64 59.4
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 4.8e-14 81.3 71 54.9
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 8.2e-14 80.5 71 57.7
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.1e-13 80.1 64 60.9
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 1.4e-13 79.7 64 60.9
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.4e-13 79.7 64 64.1
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 1.4e-13 79.7 64 60.9
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 1.4e-13 79.7 64 64.1
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 1.8e-13 79.3 63 58.7
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 2.4e-13 79.0 71 53.5
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 2.4e-13 79.0 65 56.9
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 2.4e-13 79.0 64 62.5
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 4.1e-13 78.2 66 54.5
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 4.1e-13 78.2 64 59.4
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 4.1e-13 78.2 64 60.9
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 2.6e-12 75.5 64 57.8
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.6e-12 75.5 53 67.9
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 1.7e-11 72.8 64 56.2
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 8.5e-11 70.5 64 54.7
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.5e-10 69.7 55 60.0
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 9.4e-10 67.0 49 59.2
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 4.7e-09 64.7 67 50.7
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 2.3e-08 62.4 54 55.6
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.5e-07 59.7 52 51.9
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 2.8e-06 55.5 51 51.0
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 6.3e-06 54.3 66 37.9


User provided reference genes

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