Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02850 Eucalyptus grandis HOM05D007522 ORTHO05D009518 9.0e-154 547.0 293 100.0
Eucgr.C02839 Eucalyptus grandis HOM05D007522 ORTHO05D009518 4.5e-137 491.5 282 95.7
Eucgr.C02843 Eucalyptus grandis HOM05D007522 ORTHO05D009518 2.2e-104 382.9 284 77.5
Eucgr.C02854 Eucalyptus grandis HOM05D007522 ORTHO05D009518 2.6e-100 369.4 276 77.9
Eucgr.L02345 Eucalyptus grandis HOM05D007522 ORTHO05D009518 4.4e-100 368.6 284 75.4
PGR044G0714 Punica granatum HOM05D007522 ORTHO05D009518 7.5e-76 288.1 253 62.5
TAR383G0977 Trochodendron aralioides HOM05D007522 ORTHO05D009518 4.4e-68 262.3 256 58.2
Gohir.A13G204200 Gossypium hirsutum HOM05D007522 ORTHO05D009518 4.9e-67 258.8 259 55.6
Gohir.D13G209500 Gossypium hirsutum HOM05D007522 ORTHO05D009518 1.4e-66 257.3 256 55.5
Gorai.013G238600 Gossypium raimondii HOM05D007522 ORTHO05D009518 3.2e-66 256.1 256 55.5
COL.COLO4_24044 Corchorus olitorius HOM05D007522 ORTHO05D009518 6.0e-65 251.9 254 56.3
Duzib187G1360 Durio zibethinus HOM05D007522 ORTHO05D009518 5.1e-64 248.8 217 62.2
Potri.006G247900 Populus trichocarpa HOM05D007522 ORTHO05D009518 5.6e-63 245.4 250 56.8
GSVIVG01035795001 Vitis vinifera HOM05D007522 ORTHO05D009518 7.3e-63 245.0 256 53.9
Sabra06G0193900 Salix brachista HOM05D007522 ORTHO05D009518 4.7e-62 242.3 247 56.7
QL12p031480 Quercus lobata HOM05D007522 ORTHO05D009518 1.4e-61 240.7 256 52.7
CiPaw.07G218500 Carya illinoinensis HOM05D007522 ORTHO05D009518 2.4e-61 240.0 248 54.4
Ciclev10009234m.g Citrus clementina HOM05D007522 ORTHO05D009518 2.4e-61 240.0 247 55.9
TPR.G34679 Trifolium pratense HOM05D007522 ORTHO05D009518 5.2e-61 238.8 246 54.5
Actinidia13430 Actinidia chinensis HOM05D007522 ORTHO05D009518 2.0e-60 236.9 247 53.8
FvH4_2g30000 Fragaria vesca HOM05D007522 ORTHO05D009518 5.8e-60 235.3 249 53.0
Manes.03G065616 Manihot esculenta HOM05D007522 ORTHO05D009518 5.8e-60 235.3 249 53.4
arahy.Tifrunner.gnm1.ann1.J4BCXN Arachis hypogaea HOM05D007522 ORTHO05D009518 7.6e-60 235.0 256 53.5
FAN15G2839 Fragaria x ananassa HOM05D007522 ORTHO05D009518 1.7e-59 233.8 249 52.6
Prupe.1G467900 Prunus persica HOM05D007522 ORTHO05D009518 1.7e-59 233.8 246 54.1
RcHm_v2.0_Chr6g0312911 Rosa chinensis HOM05D007522 ORTHO05D009518 6.4e-59 231.9 249 52.2
Thhalv10025779m.g Eutrema salsugineum HOM05D007522 ORTHO05D009518 1.1e-58 231.1 263 50.6
CARHR240530 Cardamine hirsuta HOM05D007522 ORTHO05D009518 1.4e-58 230.7 271 50.6
Sp7g30340 Schrenkiella parvula HOM05D007522 ORTHO05D009518 1.4e-58 230.7 265 52.1
MD15G1116400 Malus domestica HOM05D007522 ORTHO05D009518 2.4e-58 229.9 243 54.3
Medtr3g108530 Medicago truncatula HOM05D007522 ORTHO05D009518 1.2e-57 227.6 248 52.8
BcaC09g52047 Brassica carinata HOM05D007522 ORTHO05D009518 3.5e-57 226.1 269 50.9
Aa31LG4G11730 Aethionema arabicum HOM05D007522 ORTHO05D009518 6.0e-57 225.3 273 50.2
Sed0015375 Sechium edule HOM05D007522 ORTHO05D009518 6.0e-57 225.3 256 51.2
A01p05830 Brassica napus HOM05D007522 ORTHO05D009518 7.8e-57 224.9 265 52.1
AT4G32560 Arabidopsis thaliana HOM05D007522 ORTHO05D009518 1.0e-56 224.6 262 50.0
Glyma.06G072500 Glycine max HOM05D007522 ORTHO05D009518 1.0e-56 224.6 245 51.0
C01p06400 Brassica napus HOM05D007522 ORTHO05D009518 1.3e-56 224.2 258 52.7
BolC1t00636H Brassica oleracea HOM05D007522 ORTHO05D009518 1.3e-56 224.2 258 52.7
FAN24G0147 Fragaria x ananassa HOM05D007522 ORTHO05D009518 1.3e-56 224.2 239 52.7
Thecc.09G145600 Theobroma cacao HOM05D007522 ORTHO05D009518 1.3e-56 224.2 241 53.1
BraA01t00551Z Brassica rapa HOM05D007522 ORTHO05D009518 1.7e-56 223.8 265 51.7
Carub.0007s0799 Capsella rubella HOM05D007522 ORTHO05D009518 1.7e-56 223.8 257 51.4
Ca_15704_v3 Cicer arietinum L. HOM05D000186 ORTHO05D001124 2.3e-56 223.4 240 54.6
THA.LOC104819887 Tarenaya hassleriana HOM05D007522 ORTHO05D009518 3.9e-56 222.6 299 45.5
AL7G19200 Arabidopsis lyrata HOM05D007522 ORTHO05D009518 5.1e-56 222.2 263 49.8
arahy.Tifrunner.gnm1.ann1.EE81AI Arachis hypogaea HOM05D007522 ORTHO05D009518 6.6e-56 221.9 221 57.5
CSS0007980 Camellia sinensis var. sinensis HOM05D007522 ORTHO05D009518 4.3e-55 219.2 246 52.0
Lj1g0002015 Lotus japonicus HOM05D007522 ORTHO05D009518 4.3e-55 219.2 246 50.8
Oeu014660.1 Olea europaea HOM05D007522 ORTHO05D009518 4.3e-55 219.2 250 50.8
MELO3C011219.2 Cucumis melo HOM05D007522 ORTHO05D009518 5.6e-55 218.8 252 50.8
CsaV3_2G031690 Cucumis sativus L. HOM05D007522 ORTHO05D009518 3.6e-54 216.1 251 49.8
Lalb_Chr08g0243841 Lupinus albus HOM05D007522 ORTHO05D009518 3.6e-54 216.1 256 49.2
VMungo1309G1471 Vigna mungo HOM05D007522 ORTHO05D009518 1.1e-53 214.5 244 51.2
Phvul.009G097000 Phaseolus vulgaris HOM05D007522 ORTHO05D009518 2.4e-53 213.4 244 49.6
Atru.chr7.2341 Acer truncatum HOM05D007522 ORTHO05D009518 9.0e-53 211.5 187 62.0
MSTRG.25867 Avicennia marina HOM05D007522 ORTHO05D009518 3.4e-52 209.5 250 48.8
FAN27G1610 Fragaria x ananassa HOM05D007522 ORTHO05D009518 2.9e-51 206.5 217 53.9
Aqoxy2G01954 Aquilegia oxysepala HOM05D007522 ORTHO05D009518 3.8e-51 206.1 234 55.1
PSO782G1743 Papaver somniferum HOM05D007522 ORTHO05D009518 8.4e-51 204.9 268 48.9
ATR0083G062 Amborella trichopoda HOM05D007522 ORTHO05D009518 1.1e-50 204.5 255 46.3
HanXRQChr13g0402121 Helianthus annuus HOM05D007522 ORTHO05D009518 1.4e-50 204.1 247 48.2
ECA233G0736 Erigeron canadensis HOM05D007522 ORTHO05D009518 1.6e-49 200.7 247 46.6
Peaxi162Scf00267g00097 Petunia axillaris HOM05D007522 ORTHO05D009518 3.5e-49 199.5 246 47.2
EL10Ac2g02553 Beta vulgaris HOM05D007522 ORTHO05D009518 6.0e-49 198.7 243 48.6
PSO063G3677 Papaver somniferum HOM05D007522 ORTHO05D009518 7.8e-49 198.4 259 49.0
Nn8g39310 Nelumbo nucifera HOM05D007522 ORTHO05D009518 8.7e-48 194.9 237 51.9
CANSAT11G2673 Cannabis sativa HOM05D007522 ORTHO05D009518 1.1e-47 194.5 207 54.6
Solyc06g011403.1 Solanum lycopersicum HOM05D007522 ORTHO05D009518 1.5e-47 194.1 263 45.2
Sopen06g006080 Solanum pennellii HOM05D007522 ORTHO05D009518 1.5e-47 194.1 263 45.6
Migut.A00284 Erythranthe guttata HOM05D007522 ORTHO05D009518 4.3e-47 192.6 252 46.8
Psat0s1782g0120 Pisum sativum HOM05D007522 ORTHO05D009518 5.3e-45 185.7 185 55.1
Lsat_1_v5_gn_6_22860 Lactuca sativa HOM05D007522 ORTHO05D009518 5.8e-44 182.2 243 44.9
Cc11_g01290 Coffea canephora HOM05D007522 ORTHO05D009518 4.9e-43 179.1 218 46.3
AUR62032367 Chenopodium quinoa HOM05D007522 ORTHO05D009518 2.4e-42 176.8 188 53.2
Rhsim02G0189000 Rhododendron simsii HOM05D007522 ORTHO05D009518 2.4e-42 176.8 194 54.1
AagrBONN_evm.TU.Sc2ySwM_117.2977 Anthoceros agrestis HOM05D007522 ORTHO05D009518 2.3e-40 170.2 250 40.0
Pp3c10_19840 Physcomitrium patens HOM05D007522 ORTHO05D009518 2.4e-37 160.2 249 39.4
Mapoly0015s0053 Marchantia polymorpha HOM05D007522 ORTHO05D009518 6.9e-37 158.7 248 37.1
Cpa.g.sc91.26 Carica papaya HOM05D007522 ORTHO05D009518 2.6e-36 156.8 232 44.8
vmacro11126 Vaccinium macrocarpon HOM05D007522 ORTHO05D009518 1.3e-35 154.5 318 36.5
Dinv30202 Davidia involucrata HOM05D007522 ORTHO05D009518 1.6e-33 147.5 164 53.7
HPP92_008699 Vanilla planifolia HOM05D002348 ORTHO05D002512 2.7e-33 146.7 227 42.3
CDE02G2364 Ceratophyllum demersum HOM05D007522 ORTHO05D009518 1.3e-32 144.4 145 53.8
Ah.10g025820 Amaranthus hybridus HOM05D007522 ORTHO05D009518 1.8e-32 144.1 148 56.1
AUR62024852 Chenopodium quinoa HOM05D007522 ORTHO05D009518 6.2e-30 135.6 253 41.1
Haze_21613 Corylus avellana HOM05D007522 ORTHO05D009518 5.8e-28 129.0 217 39.6
SalBow8G3415 Salvia bowleyana HOM05D007522 ORTHO05D009518 1.7e-27 127.5 107 61.7
MD08G1138500 Malus domestica HOM05D007522 ORTHO05D009518 5.7e-23 112.5 92 65.2
CBR_g51241 Chara braunii HOM05D007522 ORTHO05D009518 1.6e-22 110.9 261 31.4
CBR_g75925 Chara braunii HOM05D007522 ORTHO05D009518 7.7e-20 102.1 151 38.4
Glyma.04G070700 Glycine max HOM05D007522 ORTHO05D009518 5.1e-16 89.4 124 38.7
MD08G1138600 Malus domestica HOM05D007522 ORTHO05D009518 3.3e-15 86.7 121 43.0
Cfa021321 Carpinus fangiana HOM05D007522 ORTHO05D009518 4.3e-15 86.3 87 55.2
SEGI_07807 Sequoiadendron giganteum HOM05D007522 ORTHO05D009518 5.9e-12 75.9 81 49.4


User provided reference genes

Program Settings