Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02829 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.5e-214 749.2 363 100.0
Eucgr.L02556 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.1e-196 689.9 415 83.9
Eucgr.C02820 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.2e-184 649.8 415 79.8
Eucgr.C02825 Eucalyptus grandis HOM05D004606 ORTHO05D005086 1.6e-184 649.4 402 82.1
Eucgr.C02823 Eucalyptus grandis HOM05D004606 ORTHO05D005086 8.7e-183 643.7 404 81.2
Eucgr.L01636 Eucalyptus grandis HOM05D004606 ORTHO05D005086 8.2e-165 583.9 415 73.5
Eucgr.C02822 Eucalyptus grandis HOM05D004606 ORTHO05D005086 2.2e-162 575.9 416 71.2
Eucgr.L01635 Eucalyptus grandis HOM05D004606 ORTHO05D005086 7.7e-147 524.2 380 71.3
GSVIVG01035774001 Vitis vinifera HOM05D004606 ORTHO05D005086 3.6e-128 462.2 399 58.6
Potri.018G032500 Populus trichocarpa HOM05D004606 ORTHO05D005086 4.7e-128 461.8 402 59.7
TWI63G0154 Tripterygium wilfordii HOM05D004606 ORTHO05D005086 6.8e-127 458.0 407 57.5
Sabra18G0033400 Salix brachista HOM05D004606 ORTHO05D005086 1.5e-126 456.8 402 59.5
MD15G1118300 Malus domestica HOM05D004606 ORTHO05D005086 1.3e-125 453.8 402 58.5
Lj7C716G6 Lonicera japonica HOM05D004606 ORTHO05D005086 2.9e-125 452.6 401 57.1
FvH4_2g29790 Fragaria vesca HOM05D004606 ORTHO05D005086 3.7e-125 452.2 402 58.5
FAN24G2357 Fragaria x ananassa HOM05D004606 ORTHO05D005086 3.7e-125 452.2 402 58.5
Hma1.2p1_0000F.1_g000990 Hydrangea macrophylla HOM05D004606 ORTHO05D005086 3.7e-125 452.2 407 57.0
Manes.16G118200 Manihot esculenta HOM05D004606 ORTHO05D005086 3.7e-125 452.2 406 55.2
FAN15G1610 Fragaria x ananassa HOM05D004606 ORTHO05D005086 6.4e-125 451.4 402 58.5
QL04p042401 Quercus lobata HOM05D004606 ORTHO05D005086 6.4e-125 451.4 400 58.0
Cfa013195 Carpinus fangiana HOM05D004606 ORTHO05D005086 7.0e-124 448.0 402 58.2
QL04p042370 Quercus lobata HOM05D004606 ORTHO05D005086 1.2e-123 447.2 400 57.2
QL04p042484 Quercus lobata HOM05D004606 ORTHO05D005086 1.2e-123 447.2 400 57.8
CSS0017380 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 2.1e-123 446.4 407 55.3
Duzib187G0213 Durio zibethinus HOM05D004606 ORTHO05D005086 2.1e-123 446.4 404 55.9
Prupe.1G471700 Prunus persica HOM05D004606 ORTHO05D005086 2.1e-123 446.4 404 58.2
MD08G1141800 Malus domestica HOM05D004606 ORTHO05D005086 3.5e-123 445.7 402 58.0
Rhsim02G0193100 Rhododendron simsii HOM05D004606 ORTHO05D005086 4.6e-123 445.3 404 56.7
Nn2g11896 Nelumbo nucifera HOM05D004606 ORTHO05D005086 2.3e-122 443.0 400 56.0
RcHm_v2.0_Chr6g0298811 Rosa chinensis HOM05D004606 ORTHO05D005086 5.0e-122 441.8 400 57.8
Thecc.09G147400 Theobroma cacao HOM05D004606 ORTHO05D005086 5.0e-122 441.8 404 56.7
CiPaw.07G219400 Carya illinoinensis HOM05D004606 ORTHO05D005086 6.6e-122 441.4 403 57.1
TAR626G1705 Trochodendron aralioides HOM05D004606 ORTHO05D005086 3.3e-121 439.1 400 55.2
Ciclev10008268m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.6e-121 438.3 404 54.5
MBI04_g33818_MAGBIO Magnolia biondii HOM05D004606 ORTHO05D005086 7.3e-121 438.0 402 56.0
Gorai.013G110500 Gossypium raimondii HOM05D004606 ORTHO05D005086 1.2e-120 437.2 404 55.4
CSS0006183 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 8.1e-120 434.5 410 54.9
Sed0001356 Sechium edule HOM05D004606 ORTHO05D005086 8.1e-120 434.5 399 56.9
vmacro11130 Vaccinium macrocarpon HOM05D004606 ORTHO05D005086 1.4e-119 433.7 398 56.0
Oeu045188.1 Olea europaea HOM05D004606 ORTHO05D005086 1.8e-119 433.3 406 54.9
Solyc08g067470.3 Solanum lycopersicum HOM05D004606 ORTHO05D005086 2.0e-118 429.9 400 55.0
TPR.G15650 Trifolium pratense HOM05D004606 ORTHO05D005086 2.6e-118 429.5 403 55.6
Medtr1g011690 Medicago truncatula HOM05D004606 ORTHO05D005086 3.4e-118 429.1 402 55.7
Ca_13137_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 5.8e-118 428.3 402 56.2
Gohir.A02G109707 Gossypium hirsutum HOM05D004606 ORTHO05D005086 7.5e-118 427.9 395 55.9
Nitab4.5_0002339g0060 Nicotiana tabacum HOM05D004606 ORTHO05D005086 7.5e-118 427.9 400 55.0
Peaxi162Scf00251g01122 Petunia axillaris HOM05D004606 ORTHO05D005086 7.5e-118 427.9 402 55.2
Aqoxy7G01977_Aqoxy7G01978 Aquilegia oxysepala HOM05D004606 ORTHO05D005086 9.9e-118 427.6 401 56.1
Cc11_g01620 Coffea canephora HOM05D004606 ORTHO05D005086 1.3e-117 427.2 403 53.3
AUR62032354 Chenopodium quinoa HOM05D004606 ORTHO05D005086 2.2e-117 426.4 407 53.8
PSO017G2258 Papaver somniferum HOM05D004606 ORTHO05D005086 2.2e-117 426.4 404 55.2
PSO170G2975 Papaver somniferum HOM05D004606 ORTHO05D005086 2.2e-117 426.4 404 55.2
Oeu045190.1 Olea europaea HOM05D004606 ORTHO05D005086 2.9e-117 426.0 404 55.9
Lj5g0014776 Lotus japonicus HOM05D004606 ORTHO05D005086 3.7e-117 425.6 402 56.2
Sopen08g021410 Solanum pennellii HOM05D004606 ORTHO05D005086 3.7e-117 425.6 400 54.8
FAN27G1511 Fragaria x ananassa HOM05D004606 ORTHO05D005086 4.9e-117 425.2 388 58.0
Eucgr.C02826 Eucalyptus grandis HOM05D004606 ORTHO05D005086 6.4e-117 424.9 380 56.8
Ca_12923_v3 Cicer arietinum L. HOM05D004606 ORTHO05D005086 7.1e-116 421.4 402 54.7
Nitab4.5_0000508g0210 Nicotiana tabacum HOM05D004606 ORTHO05D005086 7.1e-116 421.4 400 53.8
CsaV3_2G031750 Cucumis sativus L. HOM05D004606 ORTHO05D005086 9.2e-116 421.0 400 55.5
Glyma.17G206700 Glycine max HOM05D004606 ORTHO05D005086 9.2e-116 421.0 404 54.2
Ciclev10010301m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.6e-115 420.2 394 54.3
PGSC0003DMG400025535 Solanum tuberosum HOM05D004606 ORTHO05D005086 1.6e-115 420.2 400 54.2
Haze_21597 Corylus avellana HOM05D004606 ORTHO05D005086 2.7e-115 419.5 347 62.8
MELO3C011226.2 Cucumis melo HOM05D004606 ORTHO05D005086 4.6e-115 418.7 400 55.2
Phvul.001G053900 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 1.7e-114 416.8 403 55.3
Lalb_Chr22g0361571 Lupinus albus HOM05D004606 ORTHO05D005086 5.1e-114 415.2 403 54.8
PGR044G1635 Punica granatum HOM05D004606 ORTHO05D005086 6.6e-114 414.8 403 53.3
arahy.Tifrunner.gnm1.ann1.K28DE3 Arachis hypogaea HOM05D004606 ORTHO05D005086 8.6e-114 414.5 411 54.7
COL.COLO4_24006 Corchorus olitorius HOM05D004606 ORTHO05D005086 1.1e-113 414.1 348 59.5
AL6G21980 Arabidopsis lyrata HOM05D004606 ORTHO05D005086 4.3e-113 412.1 381 54.9
A10p26400 Brassica napus HOM05D004606 ORTHO05D005086 4.3e-113 412.1 382 55.2
Gohir.D03G064400 Gossypium hirsutum HOM05D004606 ORTHO05D005086 5.6e-113 411.8 387 55.3
Oeu031575.3 Olea europaea HOM05D004606 ORTHO05D005086 7.3e-113 411.4 395 54.4
Carub.0006s0979 Capsella rubella HOM05D004606 ORTHO05D005086 2.1e-112 409.8 379 55.4
BraA10t44697Z Brassica rapa HOM05D004606 ORTHO05D005086 2.8e-112 409.5 377 55.2
PGR044G0860 Punica granatum HOM05D004606 ORTHO05D005086 2.8e-112 409.5 401 51.6
Migut.A00299 Erythranthe guttata HOM05D004606 ORTHO05D005086 4.7e-112 408.7 402 53.7
Lsat_1_v5_gn_1_40980 Lactuca sativa HOM05D004606 ORTHO05D005086 1.4e-111 407.1 403 52.6
BolC9t59377H Brassica oleracea HOM05D004606 ORTHO05D005086 1.8e-111 406.8 379 54.4
Psat6g030120 Pisum sativum HOM05D004606 ORTHO05D005086 4.0e-111 405.6 374 56.7
THA.LOC104815034 Tarenaya hassleriana HOM05D004606 ORTHO05D005086 6.8e-111 404.8 382 53.9
VMungo0647G1004 Vigna mungo HOM05D004606 ORTHO05D005086 1.2e-110 404.1 402 53.2
CARHR201940 Cardamine hirsuta HOM05D004606 ORTHO05D005086 1.5e-110 403.7 381 53.5
Duzib168G1788 Durio zibethinus HOM05D004606 ORTHO05D005086 1.5e-110 403.7 369 55.3
Aa31LG3G15860 Aethionema arabicum HOM05D004606 ORTHO05D005086 2.0e-110 403.3 400 52.0
BcaC04g19239 Brassica carinata HOM05D004606 ORTHO05D005086 5.8e-110 401.7 379 54.1
AT5G11330 Arabidopsis thaliana HOM05D004606 ORTHO05D005086 7.6e-110 401.4 381 53.5
EL10Ac2g02564 Beta vulgaris HOM05D004606 ORTHO05D005086 1.3e-109 400.6 407 52.3
ClCG08G013020 Citrullus lanatus HOM05D004606 ORTHO05D005086 1.3e-109 400.6 395 52.2
COL.COLO4_24007 Corchorus olitorius HOM05D004606 ORTHO05D005086 1.3e-109 400.6 373 55.0
C09p65540 Brassica napus HOM05D004606 ORTHO05D005086 2.9e-109 399.4 379 53.8
Ciclev10008384m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.9e-109 399.4 401 50.1
Ciclev10008396m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.9e-109 399.4 404 49.8
Thhalv10013697m.g Eutrema salsugineum HOM05D004606 ORTHO05D005086 3.8e-109 399.1 379 53.6
Sp6g32250 Schrenkiella parvula HOM05D004606 ORTHO05D005086 3.8e-109 399.1 379 53.8
Migut.A00296 Erythranthe guttata HOM05D004606 ORTHO05D005086 6.4e-109 398.3 406 52.2
Ciclev10008398m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.1e-108 397.5 404 49.5
Migut.A00292 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.1e-108 397.5 406 52.5
Migut.A00293 Erythranthe guttata HOM05D004606 ORTHO05D005086 1.1e-108 397.5 401 51.9
Ciclev10010709m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.9e-108 396.7 391 52.7
BcaB08g37070 Brassica carinata HOM05D004606 ORTHO05D005086 2.4e-108 396.4 380 53.9
arahy.Tifrunner.gnm1.ann1.Z34R6V Arachis hypogaea HOM05D004606 ORTHO05D005086 3.2e-108 396.0 373 56.8
Migut.A00297 Erythranthe guttata HOM05D004606 ORTHO05D005086 5.4e-108 395.2 402 52.5
Migut.A00294 Erythranthe guttata HOM05D004606 ORTHO05D005086 9.2e-108 394.4 403 52.1
Migut.A00298 Erythranthe guttata HOM05D004606 ORTHO05D005086 9.2e-108 394.4 403 52.1
CSS0047394 Camellia sinensis var. sinensis HOM05D004606 ORTHO05D005086 6.0e-107 391.7 362 54.1
CsaV3_2G031760 Cucumis sativus L. HOM05D004606 ORTHO05D005086 7.8e-107 391.3 414 49.3
Ciclev10010533m.g Citrus clementina HOM05D004606 ORTHO05D005086 5.1e-106 388.7 403 50.6
Medtr1g011700 Medicago truncatula HOM05D004606 ORTHO05D005086 1.9e-105 386.7 388 53.9
ClCG08G013030 Citrullus lanatus HOM05D004606 ORTHO05D005086 3.3e-105 386.0 396 50.5
Ciclev10010634m.g Citrus clementina HOM05D004606 ORTHO05D005086 8.1e-104 381.3 412 47.3
Ciclev10008369m.g Citrus clementina HOM05D004606 ORTHO05D005086 1.1e-103 380.9 403 49.1
MELO3C011227.2 Cucumis melo HOM05D004606 ORTHO05D005086 1.8e-103 380.2 409 48.9
SGA_v2.0_scaffold448G51772 Striga asiatica HOM05D004606 ORTHO05D005086 1.8e-103 380.2 403 51.4
Dinv11601 Davidia involucrata HOM05D004606 ORTHO05D005086 3.8e-101 372.5 363 56.5
Oeu045189.1 Olea europaea HOM05D004606 ORTHO05D005086 7.1e-100 368.2 404 50.2
Ciclev10008450m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.6e-99 365.5 401 48.1
ECA233G1913 Erigeron canadensis HOM05D004606 ORTHO05D005086 1.3e-98 364.0 358 52.5
Sc09g0008700 Simmondsia chinensis HOM05D004606 ORTHO05D005086 6.2e-96 355.1 384 48.4
TAR626G0087 Trochodendron aralioides HOM05D004606 ORTHO05D005086 1.0e-90 337.8 332 52.7
ATR0051G060 Amborella trichopoda HOM05D004606 ORTHO05D005086 1.1e-89 334.3 404 46.8
Potri.006G248800 Populus trichocarpa HOM05D004606 ORTHO05D005086 2.1e-88 330.1 337 53.1
SEGI_39416 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 1.2e-86 324.3 405 44.2
AUR62041849 Chenopodium quinoa HOM05D004606 ORTHO05D005086 1.9e-84 317.0 310 53.2
Ciclev10010537m.g Citrus clementina HOM05D004606 ORTHO05D005086 4.2e-84 315.8 375 46.7
SEGI_00162 Sequoiadendron giganteum HOM05D004606 ORTHO05D005086 4.6e-83 312.4 401 43.6
Zm00001eb385840 Zea mays HOM05D004606 ORTHO05D005086 1.8e-82 310.5 408 43.4
Os06g0597600 Oryza sativa ssp. japonica HOM05D004606 ORTHO05D005086 3.4e-78 296.2 416 41.8
Phvul.001G053700 Phaseolus vulgaris HOM05D004606 ORTHO05D005086 2.2e-77 293.5 311 51.1
Mapoly0132s0019 Marchantia polymorpha HOM05D004606 ORTHO05D005086 2.1e-67 260.4 395 39.0
Pp3c18_1340 Physcomitrium patens HOM05D004606 ORTHO05D005086 3.0e-66 256.5 388 35.8
TPR.G15652 Trifolium pratense HOM05D004606 ORTHO05D005086 5.3e-63 245.7 247 53.8
PGR044G2107 Punica granatum HOM05D004606 ORTHO05D005086 2.6e-62 243.4 293 44.0
PGR044G1641 Punica granatum HOM05D004606 ORTHO05D005086 1.0e-61 241.5 199 58.3
CAN.G211.3 Capsicum annuum HOM05D004606 ORTHO05D005086 1.7e-56 224.2 302 42.1
Cpa.g.sc91.30 Carica papaya HOM05D004606 ORTHO05D005086 4.8e-56 222.6 153 68.0
Atru.chr7.2235 Acer truncatum HOM05D004606 ORTHO05D005086 8.2e-56 221.9 283 46.3
Glyma.14G127200 Glycine max HOM05D004606 ORTHO05D005086 5.9e-54 215.7 215 53.0
Ciclev10010356m.g Citrus clementina HOM05D004606 ORTHO05D005086 3.8e-53 213.0 212 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1911 Anthoceros agrestis HOM05D004606 ORTHO05D005086 5.7e-49 199.1 405 34.1
SalBow4G2310 Salvia bowleyana HOM05D004606 ORTHO05D005086 8.5e-45 185.3 180 53.9
MSTRG.25861 Avicennia marina HOM05D004606 ORTHO05D005086 3.1e-39 166.8 123 66.7
MD15G1335000 Malus domestica HOM05D004606 ORTHO05D005086 3.8e-37 159.8 199 42.7
CAN.G98.22 Capsicum annuum HOM05D004606 ORTHO05D005086 4.0e-34 149.8 139 54.7
SalBow6G5372 Salvia bowleyana HOM05D004606 ORTHO05D005086 1.4e-31 141.4 181 43.6
SalBow6G2354 Salvia bowleyana HOM05D004606 ORTHO05D005086 1.8e-31 141.0 177 44.6
QL04p042408 Quercus lobata HOM05D004606 ORTHO05D005086 3.8e-29 133.3 92 66.3
Cc11_g01610 Coffea canephora HOM05D004606 ORTHO05D005086 4.4e-25 119.8 80 67.5
Ciclev10010790m.g Citrus clementina HOM05D004606 ORTHO05D005086 2.8e-24 117.1 103 58.3
Atru.chr7.2354 Acer truncatum HOM05D004606 ORTHO05D005086 1.2e-19 101.7 75 66.7
QL04p042372 Quercus lobata HOM05D004606 ORTHO05D005086 4.4e-17 93.2 66 69.7
TPR.G9107 Trifolium pratense HOM05D004606 ORTHO05D005086 1.3e-16 91.7 67 65.7
Atru.chr7.2355 Acer truncatum HOM05D004606 ORTHO05D005086 2.2e-16 90.9 243 30.9
QL04p042488 Quercus lobata HOM05D004606 ORTHO05D005086 1.1e-15 88.6 66 66.7
Pp3c3_7450 Physcomitrium patens HOM05D002878 ORTHO05D011490 6.8e-10 69.3 363 23.1
AT2G29720 Arabidopsis thaliana HOM05D000686 ORTHO05D000512 5.8e-09 66.2 367 24.3
Nn2g11897 Nelumbo nucifera HOM05D004606 ORTHO05D005086 5.8e-09 66.2 59 54.2
SGA_v2.0_scaffold199G41238 Striga asiatica HOM05D000686 ORTHO05D000512 7.5e-09 65.9 248 26.6
Ca_24603_v3 Cicer arietinum L. HOM05D000686 ORTHO05D000512 9.8e-09 65.5 377 23.9
Rhsim04G0160100 Rhododendron simsii HOM05D000686 ORTHO05D000512 2.9e-08 63.9 372 23.1
PGR119G1097 Punica granatum HOM05D000686 ORTHO05D000512 3.7e-08 63.5 329 22.8
Lalb_Chr01g0008141 Lupinus albus HOM05D002878 ORTHO05D003649 4.9e-08 63.2 362 23.8
Sabra16G0136700 Salix brachista HOM05D002878 ORTHO05D003649 4.9e-08 63.2 331 25.1
Cfa012666 Carpinus fangiana HOM05D000686 ORTHO05D000512 8.3e-08 62.4 369 23.6
SalBow6G2722 Salvia bowleyana HOM05D000686 ORTHO05D000512 8.3e-08 62.4 373 24.7
SEGI_35816 Sequoiadendron giganteum HOM05D000686 ORTHO05D000512 1.4e-07 61.6 352 23.9
A04p27120 Brassica napus HOM05D000686 ORTHO05D000512 1.9e-07 61.2 367 24.8
GSVIVG01007345001 Vitis vinifera HOM05D000686 ORTHO05D000512 2.4e-07 60.8 371 23.5
VMungo1127G0209 Vigna mungo HOM05D002878 ORTHO05D003649 5.4e-07 59.7 369 23.0
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 9.2e-07 58.9 362 22.7
Glyma.09G000600 Glycine max HOM05D002878 ORTHO05D003649 9.2e-07 58.9 373 22.8
MBI17_g21474_MAGBIO Magnolia biondii HOM05D000686 ORTHO05D000512 9.2e-07 58.9 316 24.4
Nn2g11898 Nelumbo nucifera HOM05D004606 ORTHO05D005086 2.1e-06 57.8 40 65.0
PSO675G5810 Papaver somniferum HOM05D000686 ORTHO05D000512 3.5e-06 57.0 331 22.4
Phvul.011G214600 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 3.5e-06 57.0 373 23.1
SEGI_26755 Sequoiadendron giganteum HOM05D000686 ORTHO05D000512 3.5e-06 57.0 343 22.7
Lj3g0027459 Lotus japonicus HOM05D002878 ORTHO05D003649 7.8e-06 55.8 209 25.4
PGR119G2215 Punica granatum HOM05D000686 ORTHO05D000512 7.8e-06 55.8 323 23.5


User provided reference genes

Program Settings