Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.1e-108 396.7 207 100.0
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 4.2e-81 305.1 207 78.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 7.2e-81 304.3 199 79.4
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.7e-80 302.4 184 81.5
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 3.6e-80 302.0 214 75.7
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.7e-80 301.6 197 79.7
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 2.3e-79 299.3 217 76.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.3e-79 299.3 182 86.3
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.9e-79 298.5 208 76.4
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 3.9e-79 298.5 208 76.4
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.9e-79 298.5 193 79.8
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 5.1e-79 298.1 212 77.4
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.0e-78 296.2 199 77.4
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 2.0e-78 296.2 213 74.6
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 2.6e-78 295.8 198 77.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 4.4e-78 295.0 199 76.9
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.7e-78 294.7 208 75.5
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 7.4e-78 294.3 209 73.7
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 7.4e-78 294.3 210 75.7
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 9.7e-78 293.9 182 83.0
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 9.7e-78 293.9 181 81.8
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.8e-77 292.4 194 77.3
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 4.8e-77 291.6 193 76.7
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.8e-77 291.6 191 79.1
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.8e-77 291.6 203 72.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 6.3e-77 291.2 191 75.9
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 8.2e-77 290.8 209 74.2
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.1e-76 290.4 194 76.3
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.1e-76 290.4 213 71.4
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.1e-76 290.4 182 80.2
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.4e-76 290.0 182 80.2
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.4e-76 290.0 210 74.3
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.4e-76 290.0 176 81.2
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.8e-76 289.7 181 81.8
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.8e-76 289.7 183 80.9
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.8e-76 289.7 217 71.0
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.8e-76 289.7 182 80.2
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.8e-76 289.7 192 76.6
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.4e-76 289.3 203 74.4
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.4e-76 289.3 209 74.2
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.1e-76 288.9 197 76.6
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.1e-76 288.9 197 76.6
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 3.1e-76 288.9 204 73.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 3.1e-76 288.9 182 80.2
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.1e-76 288.5 191 78.5
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 5.3e-76 288.1 180 80.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 6.9e-76 287.7 182 79.1
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.2e-75 287.0 182 79.7
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 1.2e-75 287.0 208 73.6
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.5e-75 286.6 193 73.6
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.0e-75 286.2 186 78.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.6e-75 285.8 202 74.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 4.5e-75 285.0 182 78.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 5.9e-75 284.6 213 69.5
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.7e-75 284.3 212 70.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.7e-74 283.1 196 75.0
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.9e-74 282.3 201 74.6
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 5.0e-74 281.6 211 70.1
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 8.5e-74 280.8 183 77.0
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.5e-73 279.3 194 74.2
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 2.5e-73 279.3 198 71.7
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.5e-73 279.3 158 88.0
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 9.4e-73 277.3 204 72.1
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 9.4e-73 277.3 208 69.2
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-72 276.6 205 71.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.1e-72 276.2 191 70.2
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.6e-72 275.4 160 85.0
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.6e-72 275.4 189 74.1
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.1e-72 274.6 194 74.7
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 6.1e-72 274.6 194 74.7
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 8.0e-72 274.2 183 76.5
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 3.9e-71 271.9 213 68.1
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 8.8e-71 270.8 213 67.6
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 8.8e-71 270.8 209 67.9
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.5e-70 270.0 209 68.4
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.0e-70 269.6 209 67.9
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 4.4e-70 268.5 213 67.1
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 5.7e-70 268.1 203 68.5
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 7.4e-70 267.7 171 78.9
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 9.7e-70 267.3 204 68.6
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.3e-69 266.9 193 73.1
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.7e-69 266.5 213 66.2
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.7e-69 266.5 209 66.5
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.7e-69 266.5 189 71.4
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.7e-69 266.5 211 68.2
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.8e-69 265.8 193 72.5
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 4.8e-69 265.0 207 69.6
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 6.3e-69 264.6 204 67.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.4e-68 263.5 194 71.6
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.4e-68 263.5 211 69.2
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.8e-68 263.1 204 65.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 3.1e-68 262.3 202 67.8
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 4.1e-68 261.9 204 66.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 4.1e-68 261.9 219 65.3
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 9.1e-68 260.8 219 64.8
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.2e-67 260.4 207 66.7
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 1.6e-67 260.0 277 54.5
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.0e-67 259.6 211 68.2
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.0e-67 259.6 226 63.3
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.6e-67 259.2 212 66.0
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.5e-67 258.5 211 68.2
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.5e-67 258.5 211 68.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.7e-66 256.5 187 69.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.2e-66 256.1 191 68.1
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 3.8e-66 255.4 208 65.4
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.5e-66 254.2 207 64.7
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 8.5e-66 254.2 184 69.6
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 8.5e-66 254.2 197 70.1
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.9e-65 253.1 170 71.8
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.9e-65 253.1 170 71.8
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.9e-65 253.1 204 67.2
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.5e-65 251.5 189 69.8
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 5.5e-65 251.5 194 66.5
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 7.2e-65 251.1 196 69.4
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.7e-64 249.2 166 76.5
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.6e-64 248.8 197 68.5
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.4e-63 246.9 159 80.5
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 8.8e-63 244.2 193 66.3
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 8.2e-61 237.7 189 68.3
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.8e-60 236.5 207 66.2
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 1.1e-57 227.3 154 71.4
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 9.4e-57 224.2 128 87.5
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.2e-54 217.2 169 69.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.4e-54 215.7 127 84.3
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 3.7e-53 212.2 121 86.0
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 4.8e-53 211.8 187 57.2
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.8e-52 209.9 193 61.7
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 1.1e-49 200.7 195 59.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.2e-49 198.0 156 67.3
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 1.7e-45 186.8 169 56.8
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.9e-45 185.3 150 62.7
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 8.3e-45 184.5 192 56.8
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 3.1e-44 182.6 107 86.9
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 7.0e-44 181.4 114 75.4
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.0e-43 179.9 197 47.7
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 5.9e-43 178.3 103 86.4
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.3e-41 172.2 193 52.8
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.8e-39 166.8 165 53.9
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 8.3e-37 157.9 95 77.9
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 9.2e-36 154.5 149 54.4
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.3e-34 150.6 170 47.6
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.6e-33 145.2 172 50.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 7.5e-30 134.8 100 68.0
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 2.7e-19 99.8 68 66.2
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 1.7e-18 97.1 166 38.0
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 6.6e-18 95.1 68 64.7
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 1.9e-17 93.6 96 58.3
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 4.7e-16 89.0 183 34.4
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 1.1e-15 87.8 53 69.8
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.2e-15 85.5 201 34.3
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.8e-15 85.1 53 69.8
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.1e-12 77.8 91 48.4
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 3.2e-12 76.3 62 67.7
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 1.3e-10 70.9 56 66.1
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 1.5e-09 67.4 40 85.0


User provided reference genes

Program Settings