Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.2e-310 1068.9 520 100.0
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 7.4e-284 979.9 518 92.5
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.7e-280 968.8 518 91.5
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 5.9e-273 943.7 529 89.0
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 8.8e-237 823.5 505 77.4
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 4.8e-235 817.8 516 76.0
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 2.9e-232 808.5 510 77.5
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 6.6e-232 807.4 518 74.5
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 6.6e-232 807.4 518 74.5
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 4.0e-229 798.1 511 75.0
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 8.9e-229 797.0 507 75.0
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 2.0e-228 795.8 504 74.8
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 2.0e-228 795.8 510 76.1
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 7.5e-228 793.9 518 73.2
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 9.8e-228 793.5 506 75.1
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 3.7e-227 791.6 493 76.5
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 1.8e-226 789.3 511 74.2
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 9.2e-226 786.9 519 73.8
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 9.2e-226 786.9 497 76.1
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 1.2e-225 786.6 506 74.9
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 1.6e-225 786.2 509 73.9
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 4.5e-225 784.6 510 74.5
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 5.9e-225 784.3 508 74.2
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 5.9e-225 784.3 509 75.0
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 4.3e-223 778.1 514 73.9
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 4.7e-222 774.6 496 76.0
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 8.0e-222 773.9 509 72.3
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 8.0e-222 773.9 491 74.5
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 1.4e-221 773.1 519 71.5
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 1.2e-220 770.0 480 73.3
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 1.5e-220 769.6 497 72.8
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 2.0e-220 769.2 510 73.5
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 5.8e-220 767.7 490 74.9
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 2.9e-219 765.4 498 72.9
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 1.1e-218 763.5 504 71.8
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 1.9e-218 762.7 482 74.9
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 2.4e-218 762.3 510 72.5
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 3.2e-218 761.9 487 74.3
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 3.2e-218 761.9 505 72.1
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 1.2e-217 760.0 505 71.9
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 2.7e-217 758.8 503 72.4
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 7.8e-217 757.3 486 73.0
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 1.3e-216 756.5 497 73.8
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 1.7e-216 756.1 486 72.4
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 2.3e-216 755.7 510 71.8
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 3.0e-216 755.4 502 70.7
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 5.0e-216 754.6 490 71.6
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 5.0e-216 754.6 501 70.9
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 8.6e-216 753.8 510 71.2
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 2.5e-215 752.3 510 70.2
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 3.3e-215 751.9 502 71.3
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 7.3e-215 750.7 557 67.3
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 1.2e-214 750.0 510 71.0
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 1.6e-214 749.6 482 72.4
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 1.8e-213 746.1 494 71.5
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.8e-213 746.1 510 70.8
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 3.1e-213 745.3 491 71.5
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 5.2e-213 744.6 486 72.8
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 1.2e-212 743.4 500 71.0
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 1.3e-211 740.0 490 71.0
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 4.9e-211 738.0 502 69.5
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 2.4e-210 735.7 449 77.3
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 5.4e-210 734.6 486 70.6
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 1.7e-208 729.6 491 70.7
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 2.3e-208 729.2 501 68.7
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 2.3e-208 729.2 472 73.5
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 3.0e-208 728.8 455 76.7
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 3.9e-208 728.4 489 70.8
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 1.6e-206 723.0 480 72.7
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 2.8e-206 722.2 489 70.3
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 2.8e-206 722.2 488 70.1
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 3.6e-206 721.8 493 69.4
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 4.7e-206 721.5 486 69.3
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 1.4e-205 719.9 503 69.6
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 1.2e-204 716.8 494 70.2
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 4.4e-204 714.9 482 69.9
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 4.4e-204 714.9 482 70.1
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 4.4e-204 714.9 482 69.9
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 5.8e-204 714.5 503 69.0
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 5.8e-204 714.5 486 68.9
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 7.6e-204 714.1 504 68.7
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 2.4e-202 709.1 519 66.7
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 1.0e-200 703.7 511 66.5
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 2.3e-200 702.6 485 67.6
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 6.6e-200 701.0 472 70.1
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 1.9e-199 699.5 460 72.8
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 1.2e-198 696.8 486 67.3
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 3.4e-196 688.7 511 65.6
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 5.8e-196 688.0 550 63.3
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 1.1e-194 683.7 487 66.3
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 4.6e-193 678.3 493 65.5
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 3.6e-190 668.7 514 66.0
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 6.2e-190 667.9 516 63.0
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 5.4e-186 654.8 482 66.4
arahy.Tifrunner.gnm1.ann1.G1SIKM Arachis hypogaea HOM05D006934 ORTHO05D008743 2.9e-171 605.9 501 60.3
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 2.5e-170 602.8 477 59.3
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 1.3e-163 580.5 380 71.3
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.4e-156 555.8 499 61.5
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 2.9e-155 552.7 372 71.2
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 8.5e-147 524.6 356 69.7
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 1.4e-144 517.3 338 73.4
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 3.7e-134 482.6 332 67.5
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 4.3e-114 416.0 292 67.8
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.6e-114 415.6 304 66.4
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 1.2e-95 354.8 252 64.3
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 7.6e-87 325.5 214 67.8
Gohir.A06G101702 Gossypium hirsutum HOM05D006934 ORTHO05D008743 1.2e-68 265.0 178 70.2
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 6.0e-68 262.7 183 65.6
SGA_v2.0_scaffold22G09909 Striga asiatica HOM05D006934 ORTHO05D008743 4.3e-58 229.9 149 73.8
Zm00001eb337170 Zea mays HOM05D006934 ORTHO05D008743 1.3e-57 228.4 148 68.9
Lsat_1_v5_gn_5_171641 Lactuca sativa HOM05D006934 ORTHO05D008743 2.7e-20 104.4 104 54.8
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 2.2e-14 84.7 52 71.2
SEGI_28803 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 4.7e-12 77.0 85 49.4
Lsat_1_v5_gn_2_108800 Lactuca sativa HOM05D006934 ORTHO05D003550 3.4e-10 70.9 79 46.8


User provided reference genes

Program Settings