Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 9.2e-53 209.9 103 100.0
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.9e-50 202.2 103 96.1
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 3.2e-37 158.3 102 75.5
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.1e-34 149.8 95 74.7
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 3.3e-34 148.3 96 72.9
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 4.3e-34 147.9 99 72.7
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.6e-33 146.0 102 72.5
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 2.1e-33 145.6 99 72.7
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 4.7e-33 144.4 96 71.9
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 4.7e-33 144.4 98 71.4
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 6.2e-33 144.1 98 71.4
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 6.2e-33 144.1 102 71.6
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 1.4e-32 142.9 99 73.7
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.8e-32 142.5 99 71.7
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 2.3e-32 142.1 99 70.7
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 3.1e-32 141.7 96 74.0
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.1e-32 141.7 99 68.7
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 4.0e-32 141.4 103 71.8
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 4.0e-32 141.4 99 70.7
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.0e-31 139.0 99 67.7
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 2.0e-31 139.0 99 68.7
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 5.8e-31 137.5 98 67.3
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 5.8e-31 137.5 99 70.7
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 5.8e-31 137.5 99 70.7
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 5.8e-31 137.5 99 70.7
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 5.8e-31 137.5 99 70.7
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 5.8e-31 137.5 99 69.7
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 7.5e-31 137.1 98 68.4
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 7.5e-31 137.1 103 66.0
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 7.5e-31 137.1 100 68.0
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 7.5e-31 137.1 96 72.9
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 7.5e-31 137.1 99 69.7
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 7.5e-31 137.1 99 68.7
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 7.5e-31 137.1 96 68.8
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 7.5e-31 137.1 99 68.7
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 7.5e-31 137.1 99 68.7
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 9.9e-31 136.7 98 67.3
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 3.7e-30 134.8 98 67.3
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 6.4e-30 134.0 99 67.7
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 8.3e-30 133.7 92 72.8
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 1.1e-29 133.3 97 67.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-29 132.5 99 66.7
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 1.9e-29 132.5 99 66.7
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 1.9e-29 132.5 99 66.7
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 1.9e-29 132.5 99 66.7
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.9e-29 132.5 96 69.8
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.9e-29 132.5 96 69.8
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 2.4e-29 132.1 98 67.3
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 2.4e-29 132.1 99 65.7
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 2.4e-29 132.1 97 64.9
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 2.4e-29 132.1 92 70.7
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 3.2e-29 131.7 99 67.7
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 4.1e-29 131.3 90 74.4
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 5.4e-29 131.0 99 66.7
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 5.4e-29 131.0 99 67.7
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 7.1e-29 130.6 99 66.7
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 7.1e-29 130.6 99 67.7
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 9.2e-29 130.2 102 64.7
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-28 129.8 98 65.3
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 1.2e-28 129.8 102 65.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.2e-28 129.8 99 66.7
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 2.7e-28 128.6 99 64.6
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.7e-28 128.6 95 68.4
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 3.5e-28 128.3 99 63.6
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.5e-28 128.3 99 64.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 6.0e-28 127.5 96 66.7
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 6.0e-28 127.5 102 61.8
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 7.8e-28 127.1 103 65.0
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 7.8e-28 127.1 93 63.4
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-27 126.7 99 67.7
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.0e-27 126.7 99 67.7
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 1.0e-27 126.7 97 62.9
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.3e-27 126.3 102 62.7
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 2.3e-27 125.6 96 63.5
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 3.0e-27 125.2 98 63.3
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.9e-27 124.8 101 59.4
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 8.6e-27 123.6 99 62.6
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 8.6e-27 123.6 99 62.6
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 1.9e-26 122.5 94 63.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 9.5e-26 120.2 101 61.4
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 9.5e-26 120.2 96 60.4
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.2e-25 119.8 94 60.6
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 1.6e-25 119.4 103 59.2
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 1.6e-25 119.4 91 64.8
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 8.1e-25 117.1 99 63.6
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 2.4e-24 115.5 96 61.5
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 6.8e-24 114.0 92 65.2
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 9.9e-23 110.2 87 64.4
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 1.3e-22 109.8 96 63.5
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 2.2e-22 109.0 101 58.4
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.4e-21 106.3 97 58.8
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 4.2e-21 104.8 86 62.8
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 1.6e-20 102.8 97 57.7
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 6.0e-20 100.9 92 56.5
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 9.6e-18 93.6 88 52.3
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 1.6e-17 92.8 76 61.8
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.1e-17 92.4 74 62.2
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.8e-17 92.0 80 57.5
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 2.8e-17 92.0 80 57.5
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 4.8e-17 91.3 87 58.6
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 2.4e-16 89.0 83 56.6
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.4e-16 89.0 85 57.6
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 3.1e-16 88.6 77 57.1
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 4.0e-16 88.2 94 54.3
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 5.3e-16 87.8 83 56.6
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 1.1e-13 80.1 89 53.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.2e-12 76.6 81 51.9
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 6.0e-12 74.3 75 52.0
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 7.8e-12 73.9 63 60.3
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 7.8e-12 73.9 63 60.3
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.7e-11 72.8 72 52.8
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.7e-11 72.8 77 51.9
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.7e-11 72.8 81 46.9
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 2.3e-11 72.4 88 51.1
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 2.3e-11 72.4 92 45.7
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 3.9e-11 71.6 80 53.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 3.9e-11 71.6 80 53.8
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 5.1e-11 71.2 77 53.2
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 5.1e-11 71.2 86 47.7
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 6.6e-11 70.9 75 52.0
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 8.7e-11 70.5 70 52.9
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.1e-10 70.1 63 54.0
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 1.1e-10 70.1 69 53.6
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 1.1e-10 70.1 75 48.0
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.1e-10 70.1 93 43.0
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.5e-10 69.7 76 51.3
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.5e-10 69.7 76 51.3
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 1.9e-10 69.3 63 57.1
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 2.5e-10 68.9 63 57.1
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 2.5e-10 68.9 70 52.9
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 2.5e-10 68.9 69 52.2
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 4.3e-10 68.2 63 57.1
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 5.6e-10 67.8 67 53.7
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 7.3e-10 67.4 47 68.1
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 7.3e-10 67.4 63 55.6
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 9.6e-10 67.0 69 55.1
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 9.6e-10 67.0 70 50.0
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 1.3e-09 66.6 60 58.3
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.6e-09 66.2 77 51.9
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 2.1e-09 65.9 99 45.5
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 2.1e-09 65.9 64 54.7
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.1e-09 65.9 69 49.3
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 2.1e-09 65.9 63 52.4
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 3.6e-09 65.1 64 57.8
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 3.6e-09 65.1 62 58.1
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 3.6e-09 65.1 64 54.7
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 4.8e-09 64.7 64 57.8
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 4.8e-09 64.7 64 57.8
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 4.8e-09 64.7 64 57.8
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 4.8e-09 64.7 69 52.2
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 4.8e-09 64.7 71 50.7
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 6.2e-09 64.3 61 55.7
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 8.1e-09 63.9 63 54.0
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 1.1e-08 63.5 64 56.2
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 1.4e-08 63.2 64 56.2
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.4e-08 63.2 64 56.2
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 1.8e-08 62.8 64 56.2
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 1.8e-08 62.8 64 56.2
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 1.8e-08 62.8 64 56.2
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 1.8e-08 62.8 64 56.2
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 1.8e-08 62.8 64 56.2
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.8e-08 62.8 64 56.2
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.8e-08 62.8 93 39.8
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 2.4e-08 62.4 64 56.2
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 2.4e-08 62.4 64 56.2
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.4e-08 62.4 86 41.9
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.4e-08 62.4 86 41.9
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.4e-08 62.4 86 41.9
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 3.1e-08 62.0 64 54.7
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 3.1e-08 62.0 64 56.2
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 3.1e-08 62.0 64 54.7
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 3.1e-08 62.0 64 54.7
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 3.1e-08 62.0 64 56.2
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 3.1e-08 62.0 63 50.8
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 3.1e-08 62.0 64 54.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.1e-08 62.0 61 57.4
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 3.1e-08 62.0 64 56.2
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 4.0e-08 61.6 64 56.2
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 4.0e-08 61.6 64 56.2
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 6.9e-08 60.8 51 58.8
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 6.9e-08 60.8 78 44.9
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.5e-07 59.7 63 49.2
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.6e-07 58.9 80 45.0
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 3.4e-07 58.5 46 63.0
Nitab4.5_0002011g0090 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.8e-07 57.8 60 41.7
Nitab4.5_0003563g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 5.8e-07 57.8 62 41.9
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 7.6e-07 57.4 46 63.0
HPP92_010736 Vanilla planifolia HOM05D003524 ORTHO05D003988 1.3e-06 56.6 63 42.9


User provided reference genes

Program Settings