Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 5.4e-189 664.1 311 100.0
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 3.1e-168 595.1 311 88.4
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 3.4e-167 591.7 311 86.5
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 5.8e-167 590.9 311 87.8
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 7.5e-167 590.5 311 87.5
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 1.7e-166 589.3 311 86.5
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 1.7e-166 589.3 312 87.2
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 2.2e-166 589.0 311 87.8
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.4e-165 586.3 310 86.1
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 3.2e-165 585.1 305 87.2
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 4.1e-165 584.7 313 85.3
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 4.1e-165 584.7 307 86.3
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 5.4e-165 584.3 310 85.8
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 1.6e-164 582.8 309 86.1
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 2.7e-164 582.0 311 84.2
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 2.7e-164 582.0 311 85.5
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 4.6e-164 581.3 310 85.2
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 6.0e-164 580.9 313 84.3
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 5.1e-163 577.8 309 84.8
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 6.6e-163 577.4 311 84.2
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.1e-162 576.6 309 85.1
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 3.3e-162 575.1 313 84.7
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 5.6e-162 574.3 305 85.9
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 7.3e-162 573.9 311 84.9
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 1.2e-161 573.2 311 83.9
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 4.7e-161 571.2 308 84.4
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 1.1e-160 570.1 305 85.6
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 2.3e-160 568.9 308 85.7
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 4.0e-160 568.2 317 81.7
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 4.0e-160 568.2 305 84.6
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 5.2e-160 567.8 307 83.7
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 6.8e-160 567.4 310 84.5
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 1.2e-159 566.6 310 84.5
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 4.4e-159 564.7 317 81.1
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 9.9e-159 563.5 312 83.3
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 1.7e-158 562.8 311 82.6
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 2.2e-158 562.4 317 80.8
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 2.2e-158 562.4 316 81.3
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 3.7e-158 561.6 308 84.1
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 6.4e-158 560.8 309 83.8
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 8.3e-158 560.5 305 84.3
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 1.9e-157 559.3 303 83.5
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 9.2e-157 557.0 315 80.6
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 2.7e-156 555.4 311 82.6
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 6.0e-156 554.3 307 82.7
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.0e-155 553.5 311 83.6
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 1.9e-154 549.3 304 83.2
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 5.6e-154 547.7 311 82.6
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 1.4e-152 543.1 311 81.7
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 8.9e-152 540.4 301 84.4
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 1.5e-151 539.7 311 80.4
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 3.4e-151 538.5 309 80.3
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 4.4e-151 538.1 309 79.9
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 5.8e-151 537.7 306 79.4
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 7.6e-151 537.3 309 79.9
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 7.6e-151 537.3 309 79.9
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 7.6e-151 537.3 309 79.9
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 7.6e-151 537.3 317 78.9
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 1.3e-150 536.6 309 80.3
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 1.7e-150 536.2 304 80.6
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 8.4e-150 533.9 306 78.4
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.0e-147 526.9 307 79.2
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 1.7e-147 526.2 308 79.5
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 8.7e-147 523.9 311 79.4
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 7.3e-146 520.8 293 82.6
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 1.6e-145 519.6 308 76.6
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 9.0e-144 513.8 357 69.2
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 3.4e-143 511.9 275 86.5
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 4.4e-143 511.5 311 77.2
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 8.4e-142 507.3 407 63.1
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 1.0e-139 500.4 271 84.5
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 1.3e-139 500.0 263 87.8
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 1.2e-132 476.9 293 76.8
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 9.6e-130 467.2 264 81.4
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 9.6e-130 467.2 327 68.8
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 9.0e-128 460.7 303 71.9
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 1.3e-123 446.8 309 69.9
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 1.1e-122 443.7 250 81.2
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 1.1e-120 437.2 308 68.5
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 5.3e-120 434.9 300 63.7
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 4.1e-112 408.7 336 62.5
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 3.3e-98 362.5 168 100.0
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 1.4e-96 357.1 272 64.3
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.1e-96 355.9 311 58.8
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.1e-96 355.9 188 86.2
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 9.7e-90 334.3 168 89.3
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 1.4e-88 330.5 168 89.9
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 1.4e-88 330.5 165 89.1
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 3.1e-88 329.3 168 88.7
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 3.5e-87 325.9 183 79.8
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.7e-86 323.6 168 86.9
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 6.5e-86 321.6 168 85.1
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 2.5e-85 319.7 170 84.7
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.5e-85 319.7 186 81.2
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 3.2e-85 319.3 161 88.2
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 2.1e-84 316.6 168 85.1
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 3.6e-84 315.8 160 88.1
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 4.7e-84 315.5 168 83.9
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 6.1e-84 315.1 168 84.5
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 8.0e-84 314.7 165 84.8
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 5.3e-80 302.0 244 55.7
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 3.2e-77 292.7 185 73.0
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 1.2e-71 274.2 144 87.5
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 9.8e-58 228.0 122 85.2
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 1.7e-57 227.3 123 84.6
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 2.2e-57 226.9 123 84.6
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 8.3e-57 224.9 123 83.7
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 1.1e-56 224.6 123 83.7
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 4.1e-56 222.6 123 82.9
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 7.0e-56 221.9 123 81.3
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 1.6e-55 220.7 123 80.5
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.0e-54 218.0 123 81.3
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 1.3e-54 217.6 122 77.9
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 1.5e-53 214.2 123 80.5
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 2.5e-53 213.4 122 78.7
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 2.1e-52 210.3 123 79.7
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 4.0e-51 206.1 110 83.6
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 5.2e-51 205.7 124 78.2
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 5.8e-50 202.2 117 78.6
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 2.2e-49 200.3 124 74.2
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 4.6e-47 192.6 143 67.1
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 5.1e-46 189.1 101 79.2
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 4.0e-35 152.9 89 74.2
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 8.4e-33 145.2 243 37.4
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 3.0e-30 136.7 69 91.3
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.5e-29 134.4 71 93.0
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 5.6e-29 132.5 77 77.9
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 1.3e-28 131.3 79 75.9
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.4e-26 123.2 66 87.9
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 2.2e-17 94.0 52 78.8
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 2.5e-13 80.5 46 78.3
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 8.1e-12 75.5 47 74.5
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 2.6e-10 70.5 34 88.2
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 2.2e-09 67.4 40 75.0
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 4.6e-07 59.7 56 53.6


User provided reference genes

Program Settings