Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.3e-40 166.8 85 100.0
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.3e-33 146.0 81 93.8
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.0e-26 120.6 63 93.7
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 5.8e-21 104.0 63 81.0
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 1.0e-20 103.2 63 79.4
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 2.9e-20 101.7 73 68.5
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 2.9e-20 101.7 73 68.5
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 2.9e-20 101.7 73 68.5
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.8e-20 101.3 63 77.8
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 3.8e-20 101.3 63 77.8
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.8e-20 101.3 75 70.7
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.8e-20 101.3 63 76.2
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 4.9e-20 100.9 63 76.2
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 4.9e-20 100.9 63 76.2
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.9e-20 100.9 63 76.2
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 4.9e-20 100.9 63 76.2
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 4.9e-20 100.9 73 68.5
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 4.9e-20 100.9 63 76.2
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 6.5e-20 100.5 63 74.6
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 8.4e-20 100.1 73 67.1
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.1e-19 99.8 63 74.6
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.1e-19 99.8 63 74.6
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.1e-19 99.8 63 76.2
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.1e-19 99.8 63 76.2
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.1e-19 99.8 63 79.4
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.4e-19 99.4 63 74.6
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.4e-19 99.4 63 74.6
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.4e-19 99.4 63 74.6
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.4e-19 99.4 63 74.6
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.4e-19 99.4 63 74.6
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.9e-19 99.0 63 73.0
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.9e-19 99.0 72 70.8
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.9e-19 99.0 63 76.2
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.5e-19 98.6 73 65.8
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 2.5e-19 98.6 63 73.0
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.2e-19 97.8 63 74.6
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 5.5e-19 97.4 75 65.3
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.5e-19 97.4 63 74.6
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 5.5e-19 97.4 63 73.0
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 7.1e-19 97.1 63 71.4
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 7.1e-19 97.1 63 73.0
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 7.1e-19 97.1 63 71.4
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 7.1e-19 97.1 63 74.6
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 7.1e-19 97.1 63 73.0
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 9.3e-19 96.7 63 71.4
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.3e-19 96.7 63 74.6
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.3e-19 96.7 63 74.6
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 9.3e-19 96.7 63 74.6
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 9.3e-19 96.7 63 73.0
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.2e-18 96.3 63 74.6
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.2e-18 96.3 75 64.0
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.2e-18 96.3 75 64.0
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.2e-18 96.3 75 64.0
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.2e-18 96.3 63 71.4
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.6e-18 95.9 62 71.0
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.6e-18 95.9 64 75.0
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.6e-18 95.9 63 73.0
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.1e-18 95.5 62 71.0
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.1e-18 95.5 64 73.4
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.7e-18 95.1 64 73.4
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 2.7e-18 95.1 64 73.4
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.7e-18 95.1 63 71.4
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.7e-18 95.1 70 67.1
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.5e-18 94.7 63 73.0
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.5e-18 94.7 63 71.4
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 3.5e-18 94.7 74 63.5
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 3.5e-18 94.7 62 71.0
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 3.5e-18 94.7 73 65.8
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 4.6e-18 94.4 62 71.0
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 4.6e-18 94.4 72 63.9
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 6.0e-18 94.0 75 64.0
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 6.0e-18 94.0 63 73.0
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 6.0e-18 94.0 63 73.0
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 7.9e-18 93.6 71 67.6
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.0e-17 93.2 63 73.0
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 1.0e-17 93.2 64 73.4
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.0e-17 93.2 63 71.4
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.3e-17 92.8 63 66.7
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.3e-17 92.0 63 71.4
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 3.0e-17 91.7 63 69.8
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.9e-17 91.3 63 68.3
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 3.9e-17 91.3 72 65.3
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 5.1e-17 90.9 69 65.2
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.1e-17 90.9 64 65.6
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 6.7e-17 90.5 63 71.4
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 6.7e-17 90.5 63 71.4
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 6.7e-17 90.5 63 71.4
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 6.7e-17 90.5 63 71.4
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 8.7e-17 90.1 65 69.2
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 1.1e-16 89.7 63 68.3
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.5e-16 89.4 63 66.7
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.9e-16 89.0 63 68.3
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.3e-16 88.2 64 67.2
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 5.7e-16 87.4 68 67.6
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 5.7e-16 87.4 64 67.2
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 9.7e-16 86.7 63 68.3
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 9.7e-16 86.7 63 71.4
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 9.7e-16 86.7 63 68.3
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.3e-15 86.3 63 65.1
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 1.6e-15 85.9 71 64.8
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 2.2e-15 85.5 70 64.3
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.2e-15 85.5 71 64.8
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.2e-15 85.5 71 64.8
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.2e-15 85.5 64 70.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 2.2e-15 85.5 63 68.3
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 2.2e-15 85.5 70 64.3
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 2.8e-15 85.1 63 71.4
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 2.8e-15 85.1 63 68.3
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 2.8e-15 85.1 63 66.7
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 2.8e-15 85.1 65 69.2
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 3.7e-15 84.7 67 65.7
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 3.7e-15 84.7 63 61.9
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.3e-15 84.0 63 66.7
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 6.3e-15 84.0 63 68.3
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 6.3e-15 84.0 63 68.3
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 6.3e-15 84.0 63 68.3
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 8.2e-15 83.6 66 62.1
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.1e-14 83.2 64 67.2
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.4e-14 82.8 63 61.9
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 1.4e-14 82.8 63 61.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.8e-14 82.4 63 63.5
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 1.8e-14 82.4 64 65.6
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 2.4e-14 82.0 63 63.5
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 6.9e-14 80.5 60 68.3
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 6.9e-14 80.5 60 68.3
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 6.9e-14 80.5 63 66.7
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 6.9e-14 80.5 63 66.7
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.2e-13 79.7 64 68.8
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.5e-13 79.3 64 59.4
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 2.6e-13 78.6 65 60.0
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 5.9e-13 77.4 62 61.3
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 7.7e-13 77.0 63 57.1
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 1.7e-12 75.9 66 60.6
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 2.2e-12 75.5 82 50.0
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.2e-12 75.5 64 57.8
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 2.9e-12 75.1 83 50.6
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 5.0e-12 74.3 71 56.3
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 6.5e-12 73.9 83 49.4
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 8.5e-12 73.6 66 57.6
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.9e-11 72.4 66 56.1
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.9e-11 72.4 66 56.1
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.5e-11 72.0 65 55.4
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 2.5e-11 72.0 67 55.2
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.5e-11 72.0 67 55.2
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.5e-11 72.0 67 55.2
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 4.2e-11 71.2 65 53.8
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.1e-09 64.3 77 46.8
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 6.7e-09 63.9 67 55.2
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 8.8e-09 63.5 64 54.7
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.5e-08 62.0 38 81.6
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.5e-08 62.0 56 58.9
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 3.3e-08 61.6 64 50.0
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 3.3e-08 61.6 64 50.0
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.7e-08 60.8 72 48.6
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.3e-06 54.3 64 46.9


User provided reference genes

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