Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 9.3e-97 357.1 207 100.0
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.3e-63 246.1 205 72.7
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.0e-39 167.5 208 52.9
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.0e-39 167.5 209 53.1
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.4e-39 167.2 212 58.0
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.5e-38 163.7 138 63.8
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 2.6e-38 162.9 207 58.9
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.3e-37 160.6 208 53.8
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 2.2e-37 159.8 208 53.4
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 3.7e-37 159.1 210 52.9
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 6.4e-37 158.3 207 55.1
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.1e-36 157.5 208 54.3
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 4.1e-36 155.6 143 61.5
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.4e-36 155.2 209 54.5
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.2e-35 154.1 207 52.2
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.2e-35 154.1 142 58.5
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 1.6e-35 153.7 215 49.8
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 2.0e-35 153.3 141 58.9
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 2.0e-35 153.3 124 65.3
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 2.0e-35 153.3 208 55.8
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.5e-35 152.5 207 57.0
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 3.5e-35 152.5 207 51.2
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 7.8e-35 151.4 144 54.9
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 7.8e-35 151.4 208 51.0
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.0e-34 151.0 142 57.0
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.0e-34 151.0 208 52.9
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.3e-34 150.6 208 51.4
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 3.0e-34 149.4 139 56.8
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 3.0e-34 149.4 209 49.3
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 3.9e-34 149.1 136 60.3
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 5.0e-34 148.7 210 53.8
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 6.6e-34 148.3 228 52.2
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 1.5e-33 147.1 205 53.2
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.5e-33 146.4 144 56.2
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 4.3e-33 145.6 197 53.3
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 5.6e-33 145.2 140 58.6
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 5.6e-33 145.2 126 65.9
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.1e-32 143.3 145 55.9
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 3.6e-32 142.5 209 47.8
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.6e-32 142.5 127 55.9
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 6.2e-32 141.7 208 44.2
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 8.0e-32 141.4 142 56.3
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 1.8e-31 140.2 212 51.4
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.8e-31 140.2 208 48.1
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.8e-31 140.2 209 51.2
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 2.3e-31 139.8 140 57.1
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 2.3e-31 139.8 210 44.3
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 3.1e-31 139.4 188 52.1
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 3.1e-31 139.4 134 53.7
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 4.0e-31 139.0 148 53.4
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 8.9e-31 137.9 139 56.8
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.0e-30 136.7 140 55.7
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.0e-30 136.7 141 55.3
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 2.6e-30 136.3 210 48.1
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 3.4e-30 136.0 224 46.4
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 4.4e-30 135.6 123 56.1
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 7.5e-30 134.8 129 58.1
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 9.8e-30 134.4 208 51.4
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.3e-29 134.0 220 43.2
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 2.9e-29 132.9 207 54.6
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 4.9e-29 132.1 189 50.8
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.4e-28 130.6 207 47.3
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.4e-28 130.6 231 45.5
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.9e-28 130.2 139 53.2
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 2.4e-28 129.8 223 41.7
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.4e-28 129.8 186 50.0
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 3.2e-28 129.4 206 51.0
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 5.4e-28 128.6 140 52.9
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 5.4e-28 128.6 210 46.2
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 5.4e-28 128.6 206 49.5
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.2e-27 127.5 207 47.3
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.6e-27 127.1 206 44.2
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 2.1e-27 126.7 127 55.9
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 2.1e-27 126.7 210 48.6
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 2.7e-27 126.3 209 44.0
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 3.5e-27 125.9 141 52.5
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.0e-26 124.4 204 46.6
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.0e-26 124.4 207 44.0
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.3e-26 124.0 212 51.4
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 1.7e-26 123.6 133 51.1
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.3e-26 123.2 145 51.7
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.3e-26 123.2 143 53.1
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 3.0e-26 122.9 153 56.2
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 5.1e-26 122.1 117 59.8
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.1e-25 120.9 139 53.2
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.1e-25 120.9 209 46.4
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 1.1e-25 120.9 211 43.6
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 2.5e-25 119.8 204 50.0
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.5e-25 119.8 150 50.7
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 3.3e-25 119.4 129 54.3
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.3e-25 119.4 210 41.0
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 3.3e-25 119.4 213 48.8
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.3e-25 119.4 144 51.4
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 5.6e-25 118.6 209 41.6
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 7.3e-25 118.2 142 51.4
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 1.6e-24 117.1 207 48.3
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 2.8e-24 116.3 138 50.0
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.6e-24 115.9 128 53.9
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 1.1e-23 114.4 131 53.4
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.1e-23 114.4 136 50.7
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 5.2e-23 112.1 223 44.4
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 6.8e-23 111.7 212 45.3
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.2e-22 110.9 222 41.9
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 1.3e-21 107.5 143 46.2
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 3.7e-21 105.9 136 48.5
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 4.9e-21 105.5 216 44.0
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 1.1e-20 104.4 137 48.9
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.2e-20 102.8 86 61.6
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 3.2e-20 102.8 151 56.3
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.6e-19 100.5 123 49.6
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.6e-19 100.5 123 49.6
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.6e-19 100.5 123 49.6
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 2.7e-19 99.8 71 67.6
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 4.6e-19 99.0 89 62.9
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 6.0e-19 98.6 72 68.1
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 1.0e-18 97.8 141 44.0
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 1.0e-18 97.8 141 44.0
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.3e-18 97.4 141 44.7
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 2.3e-18 96.7 121 49.6
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 3.0e-18 96.3 132 48.5
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 3.9e-18 95.9 125 46.4
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 5.1e-18 95.5 123 48.0
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.1e-17 94.4 124 47.6
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 1.5e-17 94.0 135 45.9
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 4.3e-17 92.4 98 55.1
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 5.6e-17 92.0 143 42.0
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.2e-16 90.9 130 47.7
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 1.6e-16 90.5 123 43.9
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 3.6e-16 89.4 82 56.1
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 4.7e-16 89.0 128 43.8
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 4.7e-16 89.0 128 43.8
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 6.2e-16 88.6 123 45.5
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 1.4e-15 87.4 126 43.7
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 3.1e-15 86.3 186 37.6
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 3.1e-15 86.3 211 37.4
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 3.1e-15 86.3 211 37.4
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 5.2e-15 85.5 211 37.4
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 1.2e-14 84.3 57 73.7
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 2.0e-14 83.6 61 62.3
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 3.8e-13 79.3 154 40.9
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 1.4e-12 77.4 77 54.5
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 4.2e-12 75.9 141 39.0
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 7.1e-12 75.1 59 62.7
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 7.8e-11 71.6 62 59.7
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.3e-10 70.1 47 74.5
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 3.0e-10 69.7 89 47.2
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.9e-10 69.3 71 53.5
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 1.5e-09 67.4 143 39.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.6e-09 65.5 47 66.0
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.7e-08 62.4 62 51.6
FAN10G1293 Fragaria x ananassa HOM05D004771 ORTHO05D005565 9.9e-06 54.7 43 58.1


User provided reference genes

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