Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.6e-63 243.4 119 100.0
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.6e-56 222.6 119 93.3
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-27 126.7 122 61.5
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-25 120.2 120 59.2
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 1.4e-25 119.8 120 54.2
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.9e-25 119.4 120 60.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 1.9e-25 119.4 121 57.9
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.0e-23 113.6 122 56.6
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.3e-23 113.2 121 53.7
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.8e-23 112.8 123 53.7
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 5.1e-23 111.3 119 55.5
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.9e-22 109.4 118 50.0
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.9e-22 109.4 118 53.4
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.3e-22 108.2 121 52.1
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 9.7e-22 107.1 123 52.0
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.6e-21 106.3 121 52.9
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 2.8e-21 105.5 122 54.1
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 3.7e-21 105.1 120 51.7
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 6.3e-21 104.4 127 48.8
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.2e-21 104.0 127 48.8
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 8.2e-21 104.0 118 52.5
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 8.2e-21 104.0 120 55.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 8.2e-21 104.0 118 54.2
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.4e-20 103.2 120 54.2
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.8e-20 102.8 129 48.1
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.8e-20 102.8 118 52.5
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 4.1e-20 101.7 118 49.2
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 5.3e-20 101.3 114 50.9
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 5.3e-20 101.3 122 51.6
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.9e-20 100.9 123 50.4
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.0e-20 100.5 126 50.8
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.2e-19 100.1 123 48.8
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-19 100.1 118 50.8
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-19 100.1 121 49.6
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.5e-19 99.8 123 49.6
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 2.0e-19 99.4 116 51.7
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.6e-19 99.0 123 48.8
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 2.6e-19 99.0 123 48.8
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 3.4e-19 98.6 121 51.2
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 4.5e-19 98.2 126 50.0
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.9e-19 97.8 123 48.0
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 5.9e-19 97.8 118 51.7
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 5.9e-19 97.8 120 51.7
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 5.9e-19 97.8 126 48.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.3e-18 96.7 117 51.3
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.3e-18 96.7 120 50.0
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.7e-18 96.3 116 50.9
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.7e-18 96.3 115 51.3
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.7e-18 96.3 117 49.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.9e-18 95.5 120 47.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.9e-18 95.5 127 48.0
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 3.8e-18 95.1 121 49.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 3.8e-18 95.1 123 48.0
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 5.0e-18 94.7 117 48.7
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.0e-18 94.7 131 45.8
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 6.5e-18 94.4 129 47.3
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 8.5e-18 94.0 122 47.5
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-17 93.6 120 46.7
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.1e-17 93.6 124 46.8
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.9e-17 92.8 137 45.3
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.9e-17 92.8 118 45.8
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.9e-17 92.8 118 45.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.9e-17 92.8 128 48.4
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.5e-17 92.4 122 50.0
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.2e-17 92.0 121 46.3
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 5.5e-17 91.3 120 46.7
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 7.2e-17 90.9 122 47.5
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 7.2e-17 90.9 123 46.3
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 7.2e-17 90.9 113 50.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.2e-17 90.9 122 48.4
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 7.2e-17 90.9 127 46.5
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.2e-16 90.1 114 47.4
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.6e-16 89.7 122 44.3
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.6e-16 89.7 125 49.6
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.6e-16 89.7 121 45.5
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.1e-16 89.4 118 49.2
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.1e-16 89.4 120 46.7
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.6e-16 88.6 126 42.9
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 4.6e-16 88.2 120 45.8
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 6.1e-16 87.8 121 45.5
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 6.1e-16 87.8 116 44.8
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.4e-15 86.7 121 45.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.4e-15 86.7 127 46.5
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.8e-15 86.3 133 43.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.8e-15 86.3 120 48.3
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.8e-15 86.3 121 43.8
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.3e-15 85.9 114 46.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.3e-15 85.9 114 46.5
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.3e-15 85.9 126 42.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.3e-15 85.9 117 43.6
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.0e-15 85.5 122 45.9
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 3.0e-15 85.5 121 40.5
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 3.0e-15 85.5 118 48.3
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.9e-15 85.1 121 44.6
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.9e-15 85.1 121 44.6
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.9e-15 85.1 109 45.9
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 5.1e-15 84.7 121 39.7
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 6.7e-15 84.3 127 42.5
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-14 83.6 110 46.4
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.1e-14 83.6 135 42.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.1e-14 83.6 78 59.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.5e-14 83.2 121 39.7
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.5e-14 83.2 121 44.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.5e-14 83.2 121 44.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.5e-14 83.2 121 44.6
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-14 83.2 124 46.0
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-14 83.2 127 40.9
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.0e-14 82.8 120 45.8
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 2.5e-14 82.4 122 40.2
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 2.5e-14 82.4 125 44.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.5e-14 82.4 128 45.3
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.3e-14 81.6 110 46.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 5.7e-14 81.3 120 39.2
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 5.7e-14 81.3 118 44.9
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 7.4e-14 80.9 116 41.4
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 7.4e-14 80.9 118 43.2
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 9.7e-14 80.5 117 42.7
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.3e-13 80.1 121 43.0
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.3e-13 80.1 121 43.0
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.3e-13 80.1 114 42.1
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.3e-13 80.1 122 43.4
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 2.2e-13 79.3 121 41.3
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.8e-13 79.0 121 43.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.8e-13 79.0 97 51.5
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.8e-13 79.0 129 38.0
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.8e-13 78.2 125 40.8
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.3e-13 77.8 123 40.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 8.2e-13 77.4 137 38.7
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.1e-12 77.0 136 40.4
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.8e-12 76.3 118 41.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 2.4e-12 75.9 135 43.0
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.4e-12 75.9 116 45.7
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.1e-12 75.1 115 43.5
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 4.1e-12 75.1 80 52.5
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 5.3e-12 74.7 112 42.9
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 5.3e-12 74.7 133 39.8
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 5.3e-12 74.7 108 44.4
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 6.9e-12 74.3 122 45.1
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.1e-12 73.9 115 43.5
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 9.1e-12 73.9 114 43.0
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.5e-11 73.2 150 35.3
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.5e-11 73.2 97 49.5
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 4.5e-11 71.6 124 42.7
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.0e-10 70.5 128 39.8
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.3e-10 70.1 165 36.4
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 5.0e-10 68.2 72 47.2
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 5.0e-10 68.2 72 47.2
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.2e-09 65.5 143 36.4
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.5e-09 64.7 119 42.9
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.4e-09 63.9 158 37.3
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 2.1e-08 62.8 113 36.3
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.1e-08 62.8 82 46.3
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.8e-07 59.7 127 40.9
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 8.8e-07 57.4 65 46.2
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.5e-06 56.6 117 33.3
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.0e-06 56.2 156 31.4
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.6e-06 55.8 130 34.6
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 7.4e-06 54.3 98 39.8
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 9.7e-06 53.9 33 78.8


User provided reference genes

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