Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.7e-68 260.0 129 100.0
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.2e-56 222.2 119 93.3
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.0e-29 131.7 130 60.8
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-27 125.9 128 57.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.2e-27 125.9 125 59.2
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 3.7e-27 125.2 127 55.9
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.7e-27 125.2 128 57.8
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.2e-25 120.2 125 56.0
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 7.8e-25 117.5 122 56.6
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 7.8e-25 117.5 129 50.4
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.0e-24 117.1 136 52.2
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 3.8e-24 115.2 129 52.7
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.9e-23 112.8 128 53.9
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.9e-23 112.8 125 53.6
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-23 112.1 130 50.8
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 3.3e-23 112.1 122 55.7
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.3e-23 111.7 128 53.1
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 5.6e-23 111.3 122 49.2
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.6e-23 111.3 126 52.4
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 9.5e-23 110.5 127 51.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 9.5e-23 110.5 126 52.4
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 9.5e-23 110.5 131 50.4
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.6e-22 109.8 129 50.4
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.1e-22 109.4 120 51.7
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.8e-22 109.0 130 52.3
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.8e-22 109.0 129 51.9
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 2.8e-22 109.0 125 52.0
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 3.6e-22 108.6 125 52.0
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 6.1e-22 107.8 129 51.2
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.0e-22 107.5 132 49.2
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 8.0e-22 107.5 127 48.0
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.0e-21 107.1 129 50.4
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.4e-21 106.7 132 49.2
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.4e-21 106.7 132 49.2
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.4e-21 106.7 126 50.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.4e-21 106.7 125 50.4
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 3.0e-21 105.5 132 48.5
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.0e-21 105.1 132 48.5
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 4.0e-21 105.1 124 50.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 4.0e-21 105.1 124 53.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 4.0e-21 105.1 120 52.5
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 5.2e-21 104.8 129 49.6
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 6.8e-21 104.4 126 53.2
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 8.9e-21 104.0 120 50.8
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 8.9e-21 104.0 123 51.2
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 2.6e-20 102.4 124 49.2
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.7e-20 101.3 140 45.7
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 9.8e-20 100.5 134 47.0
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.8e-20 100.5 124 48.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 9.8e-20 100.5 127 50.4
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.3e-19 100.1 129 48.8
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.7e-19 99.8 138 47.8
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.9e-19 99.0 122 46.7
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.9e-19 99.0 122 46.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 4.9e-19 98.2 146 45.2
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 4.9e-19 98.2 117 52.1
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 4.9e-19 98.2 125 48.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 4.9e-19 98.2 137 48.9
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 6.4e-19 97.8 127 47.2
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 8.3e-19 97.4 119 52.1
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 8.3e-19 97.4 121 49.6
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 8.3e-19 97.4 124 47.6
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 8.3e-19 97.4 126 49.2
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.8e-18 96.3 125 49.6
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 2.4e-18 95.9 119 50.4
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.2e-18 95.5 124 48.4
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 4.1e-18 95.1 122 50.8
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 4.1e-18 95.1 130 46.2
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 7.0e-18 94.4 125 44.0
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 9.2e-18 94.0 123 45.5
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 9.2e-18 94.0 127 45.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.2e-17 93.6 126 46.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.6e-17 93.2 142 43.7
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.7e-17 92.4 120 45.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.7e-17 92.4 131 46.6
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 3.5e-17 92.0 130 43.1
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 3.5e-17 92.0 122 47.5
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 4.6e-17 91.7 117 46.2
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.6e-17 91.7 130 45.4
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.6e-17 91.7 127 47.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.6e-17 91.7 127 47.2
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.9e-17 91.3 126 45.2
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 7.8e-17 90.9 117 47.0
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.3e-16 89.4 126 47.6
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.3e-16 89.4 130 42.3
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.3e-16 89.4 121 46.3
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 2.3e-16 89.4 118 43.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 8.6e-16 87.4 86 57.0
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 8.6e-16 87.4 120 44.2
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.1e-15 87.0 118 45.8
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.1e-15 87.0 118 45.8
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.1e-15 87.0 124 44.4
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.1e-15 87.0 129 44.2
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-15 86.7 127 41.7
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.9e-15 86.3 117 41.9
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.9e-15 86.3 122 48.4
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.5e-15 85.9 127 46.5
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.5e-15 85.9 132 40.2
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.3e-15 85.5 128 46.1
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 3.3e-15 85.5 113 46.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.3e-15 85.5 100 51.0
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 3.3e-15 85.5 125 39.2
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 7.3e-15 84.3 127 40.2
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 7.3e-15 84.3 128 43.8
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.3e-15 84.3 113 45.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 9.5e-15 84.0 117 43.6
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.2e-14 83.6 117 48.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.1e-14 82.8 147 40.1
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 2.1e-14 82.8 123 46.3
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 2.8e-14 82.4 117 39.3
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.8e-14 82.4 117 46.2
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 2.8e-14 82.4 117 46.2
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.8e-14 82.4 117 46.2
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 2.8e-14 82.4 111 45.9
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 3.6e-14 82.0 117 42.7
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 3.6e-14 82.0 114 47.4
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.7e-14 81.6 114 46.5
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 6.2e-14 81.3 118 43.2
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.1e-13 80.5 111 45.9
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.1e-13 80.5 114 46.5
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-13 79.7 100 49.0
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.8e-13 79.7 119 45.4
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 2.3e-13 79.3 125 42.4
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 2.3e-13 79.3 125 42.4
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.3e-13 79.3 123 40.7
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 2.3e-13 79.3 112 46.4
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 3.1e-13 79.0 118 44.9
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.0e-13 78.6 127 42.5
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.0e-13 78.6 121 43.0
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 6.8e-13 77.8 83 50.6
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 8.9e-13 77.4 116 38.8
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.2e-12 77.0 124 39.5
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 123 40.7
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.2e-12 77.0 138 43.5
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.5e-12 76.6 137 40.9
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.5e-12 76.6 121 43.8
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-12 76.6 124 41.9
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 3.4e-12 75.5 132 40.2
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 5.8e-12 74.7 154 37.0
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.7e-11 73.2 120 41.7
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.7e-11 73.2 129 45.0
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.9e-11 72.4 112 42.9
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 3.7e-11 72.0 116 44.0
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.7e-11 72.0 171 35.7
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.4e-10 70.1 116 40.5
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.9e-10 69.7 136 39.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 2.4e-10 69.3 74 47.3
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 2.4e-10 69.3 74 47.3
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.6e-09 66.6 130 41.5
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.6e-09 65.1 84 47.6
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.3e-08 63.5 142 35.2
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 3.9e-08 62.0 112 35.7
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.9e-08 62.0 114 42.1
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 3.9e-08 62.0 118 40.7
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 3.9e-08 62.0 156 37.2
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 5.0e-08 61.6 119 37.8
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 4.3e-07 58.5 165 31.5
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.8e-06 55.8 100 38.0
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.8e-06 55.8 115 33.0
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 4.7e-06 55.1 130 33.8


User provided reference genes

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