Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02218 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.5e-115 420.2 351 100.0
Prupe.1G072100 Prunus persica HOM05D003453 ORTHO05D004154 4.3e-70 269.2 351 69.8
VMungo1215G2556 Vigna mungo HOM05D003453 ORTHO05D004154 2.2e-69 266.9 350 71.1
MD13G1241200 Malus domestica HOM05D003453 ORTHO05D004154 1.8e-68 263.8 352 70.5
FAN22G1784 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.2e-67 261.2 352 61.9
MD16G1245200 Malus domestica HOM05D003453 ORTHO05D004154 1.2e-67 261.2 351 69.8
FAN12G0296 Fragaria x ananassa HOM05D003453 ORTHO05D004154 4.5e-67 259.2 355 60.3
Cpa.g.sc115.61 Carica papaya HOM05D003453 ORTHO05D004154 2.9e-66 256.5 353 72.2
Lj4g0007200 Lotus japonicus HOM05D003453 ORTHO05D004154 1.1e-65 254.6 352 74.1
Atru.chr7.914 Acer truncatum HOM05D003453 ORTHO05D004154 1.9e-65 253.8 366 67.8
Phvul.003G139800 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 1.9e-65 253.8 352 72.7
PGR044G1644 Punica granatum HOM05D003453 ORTHO05D004154 1.9e-65 253.8 329 69.6
Thecc.09G192200 Theobroma cacao HOM05D003453 ORTHO05D004154 2.5e-65 253.4 356 68.3
Duzib168G0040 Durio zibethinus HOM05D003453 ORTHO05D004154 4.6e-64 249.2 333 67.0
Gohir.A13G182300 Gossypium hirsutum HOM05D003453 ORTHO05D004154 7.9e-64 248.4 328 74.4
COL.COLO4_37566 Corchorus olitorius HOM05D003453 ORTHO05D004154 3.0e-63 246.5 336 69.3
Lalb_Chr13g0299841 Lupinus albus HOM05D003453 ORTHO05D004154 5.1e-63 245.7 353 66.3
FvH4_4g06910 Fragaria vesca HOM05D003453 ORTHO05D004154 1.1e-62 244.6 355 61.7
FAN17G0675 Fragaria x ananassa HOM05D003453 ORTHO05D004154 1.1e-62 244.6 352 61.9
Medtr4g127120 Medicago truncatula HOM05D003453 ORTHO05D004154 1.5e-62 244.2 351 65.5
Gorai.013G211100 Gossypium raimondii HOM05D003453 ORTHO05D004154 2.0e-62 243.8 322 75.2
FAN07G0750 Fragaria x ananassa HOM05D003453 ORTHO05D004154 2.5e-62 243.4 352 61.9
Ciclev10008785m.g Citrus clementina HOM05D003453 ORTHO05D004154 3.3e-62 243.0 357 67.2
RcHm_v2.0_Chr4g0398811 Rosa chinensis HOM05D003453 ORTHO05D004154 7.4e-62 241.9 355 61.7
GSVIVG01029273001 Vitis vinifera HOM05D003453 ORTHO05D004154 7.4e-62 241.9 311 79.1
ClCG11G011550 Citrullus lanatus HOM05D003453 ORTHO05D004154 4.8e-61 239.2 336 72.3
Lalb_Chr07g0180741 Lupinus albus HOM05D003453 ORTHO05D004154 1.2e-59 234.6 354 65.3
Potri.006G072700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.2e-59 234.6 369 66.7
Psat4g014280 Pisum sativum HOM05D003453 ORTHO05D004154 1.5e-59 234.2 356 53.1
Glyma.17G057600 Glycine max HOM05D003453 ORTHO05D004154 2.6e-59 233.4 328 75.0
TWI34G1803 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 1.3e-58 231.1 350 71.7
CiPaw.08G031400 Carya illinoinensis HOM05D003453 ORTHO05D004154 5.0e-58 229.2 353 64.3
Manes.14G161200 Manihot esculenta HOM05D003453 ORTHO05D004154 6.5e-58 228.8 355 71.0
Ca_21264_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 8.5e-58 228.4 324 68.2
CsaV3_2G008970 Cucumis sativus L. HOM05D003453 ORTHO05D004154 8.5e-58 228.4 361 66.2
AT2G19330 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.4e-57 227.6 325 70.2
Duzib150G0655 Durio zibethinus HOM05D003453 ORTHO05D004154 2.5e-57 226.9 351 62.7
Sabra06G0054100 Salix brachista HOM05D003453 ORTHO05D004154 2.5e-57 226.9 369 67.2
AL3G48980 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 3.2e-57 226.5 325 69.5
TWI32G0581 Tripterygium wilfordii HOM05D003453 ORTHO05D004154 4.2e-57 226.1 322 76.1
Oeu035455.1 Olea europaea HOM05D003453 ORTHO05D004154 5.5e-57 225.7 329 63.8
Sp3g32700 Schrenkiella parvula HOM05D003453 ORTHO05D004154 1.2e-56 224.6 325 69.8
Thhalv10022960m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 2.1e-56 223.8 325 69.2
A07p01420 Brassica napus HOM05D003453 ORTHO05D004154 7.9e-56 221.9 325 68.9
C07p02870 Brassica napus HOM05D003453 ORTHO05D004154 7.9e-56 221.9 325 68.9
BolC7t40684H Brassica oleracea HOM05D003453 ORTHO05D004154 7.9e-56 221.9 325 68.9
BraA07t27936Z Brassica rapa HOM05D003453 ORTHO05D004154 7.9e-56 221.9 325 68.9
Oeu043899.1 Olea europaea HOM05D003453 ORTHO05D004154 1.0e-55 221.5 353 60.9
CANSAT11G2669 Cannabis sativa HOM05D003453 ORTHO05D004154 1.4e-55 221.1 341 72.4
arahy.Tifrunner.gnm1.ann1.JP7J3T Arachis hypogaea HOM05D003453 ORTHO05D004154 2.3e-55 220.3 365 59.5
BcaB03g16722 Brassica carinata HOM05D003453 ORTHO05D004154 2.3e-55 220.3 325 68.9
Carub.0003s3355 Capsella rubella HOM05D003453 ORTHO05D004154 5.1e-55 219.2 325 68.9
CARHR109780 Cardamine hirsuta HOM05D003453 ORTHO05D004154 6.7e-55 218.8 325 68.3
TPR.G5414 Trifolium pratense HOM05D003453 ORTHO05D004154 6.7e-55 218.8 353 59.5
Haze_22047 Corylus avellana HOM05D003453 ORTHO05D004154 8.8e-55 218.4 357 48.7
Aa31LG8G16370 Aethionema arabicum HOM05D003453 ORTHO05D004154 3.3e-54 216.5 335 66.9
SalBow3G1932 Salvia bowleyana HOM05D003453 ORTHO05D004154 5.7e-54 215.7 352 68.8
TAR625G0633 Trochodendron aralioides HOM05D003453 ORTHO05D004154 1.3e-53 214.5 337 69.7
CSS0013411 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.2e-53 213.8 324 63.6
CSS0032765 Camellia sinensis var. sinensis HOM05D003453 ORTHO05D004154 2.2e-53 213.8 324 63.6
Gorai.012G008100 Gossypium raimondii HOM05D003453 ORTHO05D004154 2.2e-53 213.8 350 56.6
Eucgr.C00084 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.1e-52 211.5 303 73.3
Eucgr.C00085 Eucalyptus grandis HOM05D003453 ORTHO05D004154 1.8e-52 210.7 303 69.0
Potri.018G139700 Populus trichocarpa HOM05D003453 ORTHO05D004154 1.8e-52 210.7 368 64.4
Gohir.D04G006700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 4.1e-52 209.5 350 59.7
Actinidia38507 Actinidia chinensis HOM05D003453 ORTHO05D004154 5.9e-51 205.7 343 61.5
Oeu044656.1 Olea europaea HOM05D003453 ORTHO05D004154 5.9e-51 205.7 323 63.8
Duzib170G0719 Durio zibethinus HOM05D003453 ORTHO05D004154 7.7e-51 205.3 353 65.7
Migut.J00777 Erythranthe guttata HOM05D003453 ORTHO05D004154 7.7e-51 205.3 368 58.7
CsaV3_1G032040 Cucumis sativus L. HOM05D003453 ORTHO05D004154 2.2e-50 203.8 316 72.8
Nn8g40645 Nelumbo nucifera HOM05D003453 ORTHO05D004154 3.8e-50 203.0 352 55.4
CDE05G1169 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 5.0e-50 202.6 326 58.3
Aqoxy7G02898 Aquilegia oxysepala HOM05D003453 ORTHO05D004154 8.5e-50 201.8 352 66.8
EL10Ac8g19292 Beta vulgaris HOM05D003453 ORTHO05D004154 8.5e-50 201.8 327 65.7
Sed0020380 Sechium edule HOM05D003453 ORTHO05D004154 8.5e-50 201.8 328 69.8
MELO3C003949.2 Cucumis melo HOM05D003453 ORTHO05D004154 1.1e-49 201.4 333 66.4
CDE05G3189 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 1.5e-49 201.1 326 65.3
Hma1.2p1_0235F.1_g098820 Hydrangea macrophylla HOM05D003453 ORTHO05D004154 4.2e-49 199.5 303 70.0
A03p59300 Brassica napus HOM05D003453 ORTHO05D004154 5.5e-49 199.1 325 66.8
BraA03t14987Z Brassica rapa HOM05D003453 ORTHO05D004154 5.5e-49 199.1 325 66.8
Dinv25469 Davidia involucrata HOM05D003453 ORTHO05D004154 2.7e-48 196.8 351 59.3
DCAR_009479 Daucus carota HOM05D003453 ORTHO05D004154 6.1e-48 195.7 363 57.6
Glyma.09G061500 Glycine max HOM05D003453 ORTHO05D004154 6.1e-48 195.7 331 66.8
Cc06_g17230 Coffea canephora HOM05D003453 ORTHO05D004154 1.8e-47 194.1 311 61.1
Gohir.A05G408700 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.8e-47 194.1 345 58.8
Glyma.15G167800 Glycine max HOM05D003453 ORTHO05D004154 2.3e-47 193.7 340 64.7
arahy.Tifrunner.gnm1.ann1.SX1TLQ Arachis hypogaea HOM05D003453 ORTHO05D004154 6.7e-47 192.2 356 60.4
Phvul.009G234500 Phaseolus vulgaris HOM05D003453 ORTHO05D004154 8.8e-47 191.8 327 67.3
THA.LOC104814639 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 8.8e-47 191.8 326 66.0
Lj6g0025589 Lotus japonicus HOM05D003453 ORTHO05D004154 5.7e-46 189.1 316 67.7
PSO063G7373 Papaver somniferum HOM05D003453 ORTHO05D004154 9.7e-46 188.3 329 69.3
Manes.06G017500 Manihot esculenta HOM05D003453 ORTHO05D004154 1.3e-45 188.0 350 64.9
TPR.G2523 Trifolium pratense HOM05D003453 ORTHO05D004154 8.2e-45 185.3 342 67.3
VMungo1309G3166 Vigna mungo HOM05D003453 ORTHO05D004154 1.1e-44 184.9 326 70.6
SHI03070 Sapria himalayana HOM05D003453 ORTHO05D004154 1.4e-44 184.5 334 49.4
Sabra18G0114200 Salix brachista HOM05D003453 ORTHO05D004154 2.4e-44 183.7 325 65.8
Lalb_Chr23g0276711 Lupinus albus HOM05D003453 ORTHO05D004154 2.6e-43 180.3 334 59.9
Medtr2g038380 Medicago truncatula HOM05D003453 ORTHO05D004154 2.6e-43 180.3 321 70.1
Thhalv10025419m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 3.5e-43 179.9 330 68.8
Ah.09g228510 Amaranthus hybridus HOM05D003453 ORTHO05D004154 4.5e-43 179.5 317 66.2
Psat1g142960 Pisum sativum HOM05D003453 ORTHO05D004154 4.5e-43 179.5 327 69.7
DCAR_020142 Daucus carota HOM05D003453 ORTHO05D004154 1.3e-42 177.9 321 56.1
Hund24523 Selenicereus undatus HOM05D003453 ORTHO05D004154 1.3e-42 177.9 307 69.1
CDE02G3632 Ceratophyllum demersum HOM05D003453 ORTHO05D004154 3.8e-42 176.4 321 58.9
Peaxi162Scf00006g02914 Petunia axillaris HOM05D003453 ORTHO05D004154 3.8e-42 176.4 325 66.8
ClCG06G013840 Citrullus lanatus HOM05D003453 ORTHO05D004154 6.5e-42 175.6 288 66.7
QL02p064658 Quercus lobata HOM05D003453 ORTHO05D004154 3.2e-41 173.3 356 61.0
CARHR233550 Cardamine hirsuta HOM05D003453 ORTHO05D004154 4.2e-41 172.9 322 69.3
Thhalv10027502m.g Eutrema salsugineum HOM05D003453 ORTHO05D004154 1.6e-40 171.0 325 61.5
PSO170G1153 Papaver somniferum HOM05D003453 ORTHO05D004154 1.6e-40 171.0 314 70.1
AT4G26050 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 2.7e-40 170.2 353 64.9
MBI16_g09350_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 2.7e-40 170.2 338 60.4
A03p56450 Brassica napus HOM05D003453 ORTHO05D004154 3.6e-40 169.9 332 64.8
Sc08g0004730 Simmondsia chinensis HOM05D003453 ORTHO05D004154 4.7e-40 169.5 392 43.6
C07p54660 Brassica napus HOM05D003453 ORTHO05D004154 6.1e-40 169.1 332 55.4
BolC7t45955H Brassica oleracea HOM05D003453 ORTHO05D004154 6.1e-40 169.1 332 55.4
PSO063G4618 Papaver somniferum HOM05D003453 ORTHO05D004154 1.0e-39 168.3 314 70.4
Carub.0004s1475 Capsella rubella HOM05D003453 ORTHO05D004154 1.4e-39 167.9 325 58.2
ECA240G3569 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.8e-39 167.5 317 69.4
AL7G26940 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.3e-39 167.2 351 64.1
HanXRQChr09g0245371 Helianthus annuus HOM05D003453 ORTHO05D004154 2.3e-39 167.2 316 67.7
BcaC06g32772 Brassica carinata HOM05D003453 ORTHO05D004154 5.2e-39 166.0 355 62.5
AT4G29880 Arabidopsis thaliana HOM05D003453 ORTHO05D004154 1.2e-38 164.9 325 61.5
AL7G22370 Arabidopsis lyrata HOM05D003453 ORTHO05D004154 2.0e-38 164.1 325 61.5
arahy.Tifrunner.gnm1.ann1.N816GG Arachis hypogaea HOM05D003453 ORTHO05D004154 2.0e-38 164.1 294 66.3
BraA03t14715Z Brassica rapa HOM05D003453 ORTHO05D004154 2.0e-38 164.1 336 52.4
Sed0024940 Sechium edule HOM05D003453 ORTHO05D004154 2.0e-38 164.1 318 59.7
arahy.Tifrunner.gnm1.ann1.3E2B2N Arachis hypogaea HOM05D003453 ORTHO05D004154 2.6e-38 163.7 294 66.0
BcaNung00498 Brassica carinata HOM05D003453 ORTHO05D004154 4.4e-38 162.9 318 62.9
Gohir.D13G185000 Gossypium hirsutum HOM05D003453 ORTHO05D004154 1.3e-37 161.4 268 79.5
THA.LOC104817769 Tarenaya hassleriana HOM05D003453 ORTHO05D004154 3.7e-37 159.8 336 57.7
SGA_v2.0_scaffold31G12781 Striga asiatica HOM05D003453 ORTHO05D004154 4.8e-37 159.5 324 58.0
CARHR237770 Cardamine hirsuta HOM05D003453 ORTHO05D004154 1.1e-36 158.3 325 63.1
CiPaw.07G199200 Carya illinoinensis HOM05D003453 ORTHO05D004154 3.1e-36 156.8 284 60.9
A01p17310 Brassica napus HOM05D003453 ORTHO05D004154 2.0e-35 154.1 352 62.2
BraA01t01686Z Brassica rapa HOM05D003453 ORTHO05D004154 2.0e-35 154.1 352 62.2
Psat1g142440 Pisum sativum HOM05D003453 ORTHO05D004154 2.7e-35 153.7 325 66.2
BolC1t02107H Brassica oleracea HOM05D003453 ORTHO05D004154 4.5e-35 152.9 352 62.5
Carub.0007s1491 Capsella rubella HOM05D003453 ORTHO05D004154 5.9e-35 152.5 321 58.6
unitig_578.g15728 Utricularia gibba HOM05D003453 ORTHO05D004154 2.9e-34 150.2 355 47.9
C01p21810 Brassica napus HOM05D003453 ORTHO05D004154 1.9e-33 147.5 352 61.1
BolC7t46200H Brassica oleracea HOM05D003453 ORTHO05D004154 9.4e-33 145.2 325 60.6
C07p57310 Brassica napus HOM05D003453 ORTHO05D004154 2.1e-32 144.1 325 60.3
Rhsim02G0202600 Rhododendron simsii HOM05D003453 ORTHO05D004154 3.6e-32 143.3 363 61.4
Oeu012385.1 Olea europaea HOM05D003453 ORTHO05D004154 4.7e-32 142.9 310 37.7
PGSC0003DMG400006458 Solanum tuberosum HOM05D003453 ORTHO05D004154 1.8e-31 141.0 319 63.6
HanXRQChr05g0142141 Helianthus annuus HOM05D003453 ORTHO05D004154 3.0e-31 140.2 343 50.4
Lsat_1_v5_gn_7_55120 Lactuca sativa HOM05D003453 ORTHO05D004154 5.2e-31 139.4 321 62.3
BcaC06g36564 Brassica carinata HOM05D003453 ORTHO05D004154 2.6e-30 137.1 249 71.5
Sp7g27690 Schrenkiella parvula HOM05D003453 ORTHO05D004154 2.6e-30 137.1 326 60.1
Rhsim03G0267900 Rhododendron simsii HOM05D003453 ORTHO05D004154 9.8e-30 135.2 306 65.7
Sopen12g008270 Solanum pennellii HOM05D003453 ORTHO05D004154 3.7e-29 133.3 319 58.6
Solyc12g017480.3 Solanum lycopersicum HOM05D003453 ORTHO05D004154 4.9e-29 132.9 319 58.6
HanXRQChr04g0103791 Helianthus annuus HOM05D003453 ORTHO05D004154 6.3e-29 132.5 328 59.1
Lju50A41T23 Lonicera japonica HOM05D003453 ORTHO05D004154 1.1e-28 131.7 102 63.7
Lju50A42T20 Lonicera japonica HOM05D003453 ORTHO05D004154 1.1e-28 131.7 102 63.7
Os04g0605300 Oryza sativa ssp. japonica HOM05D003453 ORTHO05D004154 1.1e-28 131.7 340 61.2
Aa31LG3G390 Aethionema arabicum HOM05D003453 ORTHO05D004154 1.4e-28 131.3 333 47.4
Sed0001635 Sechium edule HOM05D003453 ORTHO05D004154 1.8e-28 131.0 285 50.9
Lju432C7T0 Lonicera japonica HOM05D003453 ORTHO05D004154 1.2e-27 128.3 102 62.7
ATR0580G242 Amborella trichopoda HOM05D003453 ORTHO05D004154 1.6e-27 127.9 336 55.4
ECA236G3452 Erigeron canadensis HOM05D003453 ORTHO05D004154 1.6e-27 127.9 325 58.5
Actinidia29965 Actinidia chinensis HOM05D003453 ORTHO05D004154 3.5e-27 126.7 163 50.9
Ca_02128_v3 Cicer arietinum L. HOM05D003453 ORTHO05D004154 7.7e-27 125.6 321 55.8
Lsat_1_v5_gn_8_68380 Lactuca sativa HOM05D003453 ORTHO05D004154 3.8e-26 123.2 320 55.6
DCAR_018009 Daucus carota HOM05D003453 ORTHO05D004154 1.5e-25 121.3 364 50.0
Nitab4.5_0001335g0020 Nicotiana tabacum HOM05D003453 ORTHO05D004154 1.8e-23 114.4 324 42.3
Zm00001eb071570 Zea mays HOM05D003453 ORTHO05D004154 1.8e-23 114.4 332 57.5
AUR62027430 Chenopodium quinoa HOM05D003453 ORTHO05D004154 2.3e-23 114.0 326 38.7
Actinidia29966 Actinidia chinensis HOM05D003453 ORTHO05D004154 5.2e-23 112.8 88 67.0
MSTRG.19360 Avicennia marina HOM05D003453 ORTHO05D004154 8.9e-23 112.1 100 55.0
SHI33663 Sapria himalayana HOM05D003453 ORTHO05D004154 7.5e-22 109.0 162 58.0
PGR018G0002 Punica granatum HOM05D003453 ORTHO05D004154 9.8e-22 108.6 350 51.1
PGR142G3132 Punica granatum HOM05D003453 ORTHO05D004154 9.8e-22 108.6 350 51.1
PGR142G4131 Punica granatum HOM05D003453 ORTHO05D004154 9.8e-22 108.6 350 51.1
Aa31LG2G20670 Aethionema arabicum HOM05D003453 ORTHO05D004154 4.6e-19 99.8 164 48.2
MBI14_g10728_MAGBIO Magnolia biondii HOM05D003453 ORTHO05D004154 3.9e-18 96.7 163 57.1
AUR62031265 Chenopodium quinoa HOM05D003453 ORTHO05D004154 9.5e-17 92.0 111 45.0
vmacro22287 Vaccinium macrocarpon HOM05D003453 ORTHO05D004154 4.0e-15 86.7 148 60.8
Sc14g0003130 Simmondsia chinensis HOM05D003453 ORTHO05D004154 1.2e-14 85.1 331 57.4
MELO3C029529.2 Cucumis melo HOM05D003453 ORTHO05D004154 2.6e-14 84.0 81 49.4
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 1.9e-12 77.8 247 57.5
SpUn0235_0010 Schrenkiella parvula HOM05D003453 ORTHO05D004154 8.6e-10 68.9 257 59.9
HPP92_010787 Vanilla planifolia HOM05D003453 ORTHO05D004154 1.6e-08 64.7 105 39.0
BcaB08g34854 Brassica carinata HOM05D003453 ORTHO05D004154 4.4e-06 56.6 45 64.4
BcaC08g43401 Brassica carinata HOM05D003453 ORTHO05D004154 9.8e-06 55.5 77 45.5
C06p07690 Brassica napus HOM05D003453 ORTHO05D004154 9.8e-06 55.5 77 45.5


User provided reference genes

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