Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.5e-203 712.6 358 100.0
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 1.1e-105 387.5 348 58.3
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 9.1e-100 367.9 351 56.1
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.6e-99 367.1 353 56.7
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 2.3e-98 363.2 354 53.7
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 9.8e-94 347.8 357 52.1
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 3.1e-92 342.8 352 52.3
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 9.2e-92 341.3 352 52.6
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.6e-91 340.5 355 52.4
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 5.9e-91 338.6 358 51.7
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 5.0e-90 335.5 355 52.7
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 1.8e-87 327.0 351 49.9
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-86 324.3 348 51.4
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.5e-86 323.9 359 51.5
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 3.4e-86 322.8 350 50.3
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.2e-85 320.1 348 51.4
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 6.4e-85 318.5 354 48.6
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 8.3e-85 318.2 351 51.0
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 5.4e-84 315.5 350 49.1
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 7.0e-84 315.1 361 48.2
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 7.8e-83 311.6 351 49.6
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.0e-82 311.2 355 48.5
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 1.3e-82 310.8 345 48.7
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.7e-82 310.5 342 49.4
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.7e-82 310.5 364 48.6
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.7e-82 310.5 353 51.0
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.9e-82 309.3 347 49.0
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 5.0e-82 308.9 347 49.0
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.1e-81 307.8 345 48.7
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.5e-81 307.4 347 48.4
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.9e-81 307.0 354 47.7
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 2.1e-80 303.5 346 50.0
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 6.2e-80 302.0 354 48.3
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 1.5e-78 297.4 347 49.0
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 1.5e-78 297.4 392 46.2
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 2.2e-77 293.5 351 45.6
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 2.9e-77 293.1 345 47.2
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 8.3e-77 291.6 345 47.2
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.1e-76 291.2 347 46.7
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 4.1e-76 289.3 358 48.3
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 9.2e-76 288.1 348 45.1
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.2e-75 287.7 348 45.7
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 6.0e-75 285.4 353 47.0
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 7.8e-75 285.0 346 45.1
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 1.3e-74 284.3 345 46.1
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 2.3e-74 283.5 359 44.8
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 2.3e-74 283.5 362 45.6
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 8.6e-74 281.6 349 46.7
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 8.6e-74 281.6 353 44.8
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.5e-73 280.8 347 47.0
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 5.6e-73 278.9 352 45.7
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 2.8e-72 276.6 320 49.7
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 8.1e-72 275.0 337 47.8
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 1.8e-71 273.9 350 44.0
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 4.0e-71 272.7 382 42.7
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 5.2e-71 272.3 355 45.1
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 2.6e-70 270.0 359 44.8
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 9.9e-70 268.1 346 44.5
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 1.3e-69 267.7 352 44.3
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.3e-69 267.7 350 43.7
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 4.9e-69 265.8 349 44.1
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 1.1e-68 264.6 348 44.8
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 2.4e-68 263.5 348 44.8
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 4.1e-68 262.7 348 44.3
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 9.2e-68 261.5 348 44.3
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 9.2e-68 261.5 343 44.3
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 2.1e-67 260.4 358 44.7
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 2.1e-67 260.4 348 42.8
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.5e-67 259.6 349 43.3
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 4.6e-67 259.2 356 41.3
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 4.6e-67 259.2 347 42.7
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 3.9e-66 256.1 355 42.3
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 5.1e-66 255.8 347 43.5
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 6.6e-66 255.4 348 44.0
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 8.6e-66 255.0 342 44.2
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.5e-65 254.2 390 40.0
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.5e-65 254.2 362 41.2
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 3.3e-65 253.1 349 42.4
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.6e-64 250.8 348 43.7
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 8.1e-64 248.4 355 41.7
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 3.1e-63 246.5 348 42.8
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.0e-63 246.1 313 44.1
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 4.0e-63 246.1 359 42.3
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 5.2e-63 245.7 356 44.9
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.2e-62 244.6 349 41.3
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.7e-61 240.7 355 39.4
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 2.9e-61 240.0 319 43.9
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 2.9e-61 240.0 450 35.1
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 2.7e-59 233.4 331 41.4
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 3.3e-57 226.5 254 49.2
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 7.3e-57 225.3 356 37.6
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.8e-56 223.4 274 47.8
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 3.6e-56 223.0 277 46.2
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 1.5e-54 217.6 356 38.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 7.6e-54 215.3 270 45.2
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 3.8e-53 213.0 359 37.9
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 3.8e-53 213.0 343 40.2
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 2.7e-51 206.8 311 40.2
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 3.5e-51 206.5 354 39.3
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 4.6e-51 206.1 356 37.6
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 3.0e-50 203.4 315 39.0
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.4e-47 194.5 201 50.2
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 2.0e-46 190.7 347 36.9
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.4e-46 189.9 276 42.0
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.5e-46 189.5 192 53.1
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 7.6e-46 188.7 204 51.5
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.1e-44 184.9 354 33.3
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.2e-43 181.4 206 47.6
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 3.9e-42 176.4 370 32.7
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 1.1e-41 174.9 279 41.2
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 2.1e-40 170.6 191 51.8
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 2.8e-40 170.2 309 36.6
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.7e-37 161.0 320 34.4
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 8.4e-37 158.7 219 44.7
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 3.2e-36 156.8 258 36.4
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 2.3e-34 150.6 120 60.0
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 1.5e-33 147.9 198 43.9
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 8.2e-32 142.1 264 40.2
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 8.2e-32 142.1 264 40.2
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 8.2e-32 142.1 264 40.2
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 4.9e-29 132.9 219 42.5
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.9e-29 132.9 164 44.5
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 6.5e-29 132.5 254 40.2
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 1.6e-27 127.9 389 28.5
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 2.5e-25 120.6 286 30.8
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 3.1e-23 113.6 102 54.9
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 2.5e-20 104.0 397 25.4
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 2.1e-19 100.9 96 58.3
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 1.3e-16 91.7 131 40.5
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.2e-16 90.9 197 33.5
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 7.7e-14 82.4 97 44.3
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 7.7e-14 82.4 107 38.3
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.2e-11 75.1 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 1.4e-10 71.6 186 27.4
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 6.7e-10 69.3 64 51.6
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.1e-07 60.1 76 50.0
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 9.1e-07 58.9 134 31.3
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 1.2e-06 58.5 379 21.6


User provided reference genes

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