Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 5.2e-34 147.1 73 100.0
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 4.0e-18 94.4 66 74.2
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 8.9e-18 93.2 66 72.7
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 8.9e-18 93.2 66 72.7
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 8.9e-18 93.2 66 72.7
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 8.9e-18 93.2 66 72.7
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.2e-17 92.8 48 85.4
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.5e-17 92.4 48 85.4
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 1.5e-17 92.4 66 71.2
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 2.0e-17 92.0 66 71.2
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 2.0e-17 92.0 66 69.7
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.6e-17 91.7 56 75.0
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 2.6e-17 91.7 66 71.2
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.6e-17 91.7 66 71.2
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 2.6e-17 91.7 66 71.2
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 3.4e-17 91.3 66 71.2
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 3.4e-17 91.3 66 71.2
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 3.4e-17 91.3 65 72.3
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.4e-17 90.9 66 71.2
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.4e-17 90.9 66 71.2
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 4.4e-17 90.9 48 85.4
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 4.4e-17 90.9 66 71.2
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 4.4e-17 90.9 66 72.7
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 4.4e-17 90.9 66 72.7
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 4.4e-17 90.9 66 71.2
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 5.7e-17 90.5 66 69.7
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 5.7e-17 90.5 48 83.3
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 7.5e-17 90.1 66 69.7
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 9.8e-17 89.7 66 71.2
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 9.8e-17 89.7 48 85.4
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 9.8e-17 89.7 66 71.2
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 9.8e-17 89.7 66 66.7
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.3e-16 89.4 66 68.2
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.3e-16 89.4 66 69.7
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.3e-16 89.4 66 69.7
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.3e-16 89.4 66 69.7
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 1.3e-16 89.4 66 69.7
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.3e-16 89.4 66 69.7
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.3e-16 89.4 66 69.7
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.7e-16 89.0 66 69.7
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.7e-16 89.0 66 69.7
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.7e-16 89.0 66 71.2
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.7e-16 89.0 66 69.7
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 2.2e-16 88.6 66 69.7
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.2e-16 88.6 66 69.7
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 2.2e-16 88.6 66 69.7
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 2.2e-16 88.6 66 69.7
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 2.2e-16 88.6 66 69.7
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.2e-16 88.6 66 66.7
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 3.7e-16 87.8 66 69.7
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 3.7e-16 87.8 66 69.7
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 3.7e-16 87.8 66 68.2
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 3.7e-16 87.8 66 69.7
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 3.7e-16 87.8 48 81.2
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 68.2
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 69.7
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 66.7
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 66.7
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 66.7
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 66.7
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 4.9e-16 87.4 48 81.2
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 4.9e-16 87.4 63 71.4
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 69.7
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 66.7
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 68.2
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 4.9e-16 87.4 66 69.7
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 6.3e-16 87.0 66 69.7
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 6.3e-16 87.0 67 70.1
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 6.3e-16 87.0 66 69.7
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 6.3e-16 87.0 66 69.7
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 68.2
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 68.2
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 68.2
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 68.2
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 68.2
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 68.2
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 69.7
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 69.7
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 8.3e-16 86.7 48 79.2
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 8.3e-16 86.7 67 68.7
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 8.3e-16 86.7 66 69.7
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.1e-15 86.3 66 68.2
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.1e-15 86.3 64 68.8
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.1e-15 86.3 66 68.2
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.1e-15 86.3 66 69.7
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 1.4e-15 85.9 48 81.2
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.4e-15 85.9 66 68.2
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.4e-15 85.9 66 68.2
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.4e-15 85.9 66 68.2
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.4e-15 85.9 66 62.1
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.8e-15 85.5 66 68.2
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.8e-15 85.5 66 68.2
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.8e-15 85.5 66 68.2
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.8e-15 85.5 66 68.2
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 1.8e-15 85.5 66 68.2
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.4e-15 85.1 66 63.6
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 2.4e-15 85.1 66 68.2
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 4.1e-15 84.3 48 75.0
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 4.1e-15 84.3 66 65.2
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 4.1e-15 84.3 67 67.2
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 4.1e-15 84.3 66 68.2
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 5.4e-15 84.0 48 72.9
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 5.4e-15 84.0 66 65.2
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.4e-15 84.0 66 66.7
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.4e-15 84.0 66 66.7
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 5.4e-15 84.0 66 65.2
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 7.0e-15 83.6 66 63.6
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 7.0e-15 83.6 66 66.7
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 9.2e-15 83.2 66 66.7
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 9.2e-15 83.2 66 63.6
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.2e-14 82.8 66 63.6
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.6e-14 82.4 66 60.6
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-14 82.4 51 70.6
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 1.6e-14 82.4 66 59.1
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.6e-14 82.4 59 67.8
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.3e-13 79.3 67 65.7
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.7e-13 79.0 66 62.1
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 2.9e-13 78.2 47 70.2
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 8.6e-13 76.6 74 59.5
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 1.9e-12 75.5 66 62.1
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.1e-11 72.0 48 62.5
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.8e-11 71.6 47 63.8
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 4.7e-11 70.9 48 60.4
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 8.0e-11 70.1 48 60.4
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 1.8e-10 68.9 54 66.7
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.5e-09 65.9 43 65.1
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 9.8e-09 63.2 48 56.2
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 1.3e-08 62.8 51 64.7
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.7e-08 62.4 48 56.2


User provided reference genes

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