Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 2.1e-42 175.3 85 100.0
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 4.9e-20 100.9 70 67.1
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 3.2e-19 98.2 70 64.3
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.0e-17 93.2 65 64.6
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 1.3e-17 92.8 75 58.7
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 1.3e-17 92.8 68 63.2
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 2.3e-17 92.0 74 59.5
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.0e-17 91.7 64 62.5
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.0e-17 91.7 64 62.5
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 3.0e-17 91.7 64 62.5
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 3.0e-17 91.7 72 62.5
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 6.7e-17 90.5 64 57.8
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 6.7e-17 90.5 72 58.3
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 6.7e-17 90.5 76 59.2
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 8.7e-17 90.1 74 62.2
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 8.7e-17 90.1 68 60.3
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 1.1e-16 89.7 70 58.6
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.1e-16 89.7 64 60.9
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 1.5e-16 89.4 84 52.4
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 1.5e-16 89.4 84 52.4
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.9e-16 89.0 65 61.5
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 1.9e-16 89.0 63 61.9
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 1.9e-16 89.0 66 60.6
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 2.5e-16 88.6 65 61.5
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 2.5e-16 88.6 65 61.5
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 2.5e-16 88.6 68 60.3
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 2.5e-16 88.6 84 52.4
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 2.5e-16 88.6 68 60.3
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 2.5e-16 88.6 65 61.5
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 2.5e-16 88.6 65 61.5
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 5.7e-16 87.4 84 51.2
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 5.7e-16 87.4 84 51.2
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 5.7e-16 87.4 60 63.3
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 7.4e-16 87.0 72 58.3
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 7.4e-16 87.0 72 58.3
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 7.4e-16 87.0 66 59.1
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 9.7e-16 86.7 89 48.3
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 9.7e-16 86.7 63 58.7
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 9.7e-16 86.7 63 60.3
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 1.3e-15 86.3 74 56.8
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 1.6e-15 85.9 84 50.0
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 1.6e-15 85.9 68 55.9
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 1.6e-15 85.9 63 63.5
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 1.6e-15 85.9 64 59.4
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 2.2e-15 85.5 64 57.8
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.2e-15 85.5 72 58.3
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 2.2e-15 85.5 71 57.7
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 2.8e-15 85.1 67 59.7
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.8e-15 85.1 70 58.6
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 2.8e-15 85.1 66 57.6
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 3.7e-15 84.7 67 58.2
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 3.7e-15 84.7 67 58.2
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 3.7e-15 84.7 75 54.7
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 4.8e-15 84.3 59 64.4
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 4.8e-15 84.3 60 60.0
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 4.8e-15 84.3 67 58.2
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 4.8e-15 84.3 67 58.2
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 4.8e-15 84.3 63 61.9
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 4.8e-15 84.3 79 54.4
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 4.8e-15 84.3 66 56.1
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 6.3e-15 84.0 64 56.2
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 8.2e-15 83.6 60 65.0
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 8.2e-15 83.6 61 60.7
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 8.2e-15 83.6 72 54.2
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 1.1e-14 83.2 68 54.4
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.1e-14 83.2 70 51.4
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 1.1e-14 83.2 72 55.6
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 1.4e-14 82.8 61 59.0
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 1.4e-14 82.8 61 59.0
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 2.4e-14 82.0 66 57.6
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 2.4e-14 82.0 73 50.7
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 2.4e-14 82.0 70 54.3
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 3.1e-14 81.6 58 62.1
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 3.1e-14 81.6 69 56.5
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 4.1e-14 81.3 63 55.6
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 4.1e-14 81.3 61 60.7
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 5.3e-14 80.9 73 54.8
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 6.9e-14 80.5 64 59.4
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 6.9e-14 80.5 64 59.4
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 6.9e-14 80.5 64 56.2
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 6.9e-14 80.5 64 56.2
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 9.0e-14 80.1 61 60.7
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 9.0e-14 80.1 70 52.9
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 9.0e-14 80.1 63 58.7
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 1.2e-13 79.7 81 50.6
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 1.2e-13 79.7 64 54.7
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 1.2e-13 79.7 64 54.7
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 1.2e-13 79.7 64 54.7
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 1.5e-13 79.3 77 53.2
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 2.6e-13 78.6 62 59.7
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 3.4e-13 78.2 65 55.4
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 3.4e-13 78.2 65 55.4
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 3.4e-13 78.2 65 55.4
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 4.5e-13 77.8 71 52.1
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 4.5e-13 77.8 64 54.7
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 4.5e-13 77.8 63 55.6
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 4.5e-13 77.8 61 60.7
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 5.9e-13 77.4 61 57.4
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 7.7e-13 77.0 69 52.2
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 7.7e-13 77.0 65 50.8
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 7.7e-13 77.0 70 54.3
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 7.7e-13 77.0 78 51.3
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.0e-12 76.6 56 60.7
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 1.0e-12 76.6 70 51.4
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.0e-12 76.6 54 66.7
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 1.3e-12 76.3 64 54.7
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 1.3e-12 76.3 58 60.3
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 2.2e-12 75.5 64 54.7
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 2.9e-12 75.1 72 51.4
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 2.9e-12 75.1 60 56.7
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 1.1e-11 73.2 59 57.6
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 1.4e-11 72.8 69 49.3
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 2.5e-11 72.0 73 49.3
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 7.2e-11 70.5 67 50.7
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.2e-10 69.7 70 45.7
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 3.6e-10 68.2 66 48.5
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 8.8e-09 63.5 62 43.5
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 4.3e-08 61.2 46 58.7
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 7.4e-08 60.5 71 45.1
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 7.4e-08 60.5 56 50.0
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 9.7e-08 60.1 63 41.3
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 4.8e-07 57.8 55 50.9
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 6.3e-07 57.4 48 54.2
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 1.8e-06 55.8 63 42.9


User provided reference genes

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