Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01960 Eucalyptus grandis HOM05D000358 ORTHO05D009346 1.6e-32 142.1 72 100.0
Eucgr.L00778 Eucalyptus grandis HOM05D000358 ORTHO05D009346 2.1e-32 141.7 72 98.6
Eucgr.K03368 Eucalyptus grandis HOM05D000358 ORTHO05D009346 8.1e-32 139.8 72 97.2
PGR044G2401 Punica granatum HOM05D000358 ORTHO05D009346 2.5e-20 101.7 63 79.4
Sabra05G0160900 Salix brachista HOM05D000358 ORTHO05D009346 3.2e-20 101.3 63 74.6
CANSAT25G1780 Cannabis sativa HOM05D000358 ORTHO05D009346 2.1e-19 98.6 61 75.4
Ciclev10022514m.g Citrus clementina HOM05D000358 ORTHO05D009346 1.3e-18 95.9 58 74.1
TWI14G1410 Tripterygium wilfordii HOM05D000358 ORTHO05D009346 1.3e-18 95.9 63 71.4
MBI04_g20822_MAGBIO Magnolia biondii HOM05D000358 ORTHO05D009346 5.1e-18 94.0 63 66.7
Dinv32921 Davidia involucrata HOM05D000358 ORTHO05D002525 6.7e-18 93.6 62 71.0
Duzib133G0337 Durio zibethinus HOM05D000358 ORTHO05D009346 8.7e-18 93.2 62 69.4
Glyma.03G155200 Glycine max HOM05D000358 ORTHO05D009346 8.7e-18 93.2 67 65.7
Rhsim13G0026100 Rhododendron simsii HOM05D000358 ORTHO05D009346 2.5e-17 91.7 59 69.5
SGA_v2.0_scaffold81G26022 Striga asiatica HOM05D000358 ORTHO05D009346 2.5e-17 91.7 56 71.4
EL10Ac5g10557 Beta vulgaris HOM05D000358 ORTHO05D009346 3.3e-17 91.3 59 66.1
HanXRQChr15g0466741 Helianthus annuus HOM05D000358 ORTHO05D009346 4.3e-17 90.9 56 73.2
Lsat_1_v5_gn_9_3480 Lactuca sativa HOM05D000358 ORTHO05D009346 4.3e-17 90.9 56 73.2
Manes.05G077400 Manihot esculenta HOM05D000358 ORTHO05D009346 5.7e-17 90.5 60 71.7
CSS0040373 Camellia sinensis var. sinensis HOM05D000358 ORTHO05D009346 7.4e-17 90.1 63 63.5
TAR375G0394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 9.7e-17 89.7 63 66.7
Thecc.01G276900 Theobroma cacao HOM05D000358 ORTHO05D009346 1.3e-16 89.4 62 66.1
Atru.chr5.1460 Acer truncatum HOM05D000358 ORTHO05D009346 2.2e-16 88.6 62 62.9
Gohir.D11G128700 Gossypium hirsutum HOM05D000358 ORTHO05D009346 2.2e-16 88.6 62 66.1
Gorai.007G137700 Gossypium raimondii HOM05D000358 ORTHO05D009346 2.2e-16 88.6 62 66.1
Lj1A47T39 Lonicera japonica HOM05D000358 ORTHO05D009346 2.2e-16 88.6 59 67.8
MD11G1284000 Malus domestica HOM05D000358 ORTHO05D009346 2.8e-16 88.2 63 65.1
Cpa.g.sc52.51 Carica papaya HOM05D000358 ORTHO05D009346 3.7e-16 87.8 60 70.0
Actinidia09124 Actinidia chinensis HOM05D000358 ORTHO05D009346 6.3e-16 87.0 59 67.8
Os03g0701300 Oryza sativa ssp. japonica HOM05D000358 ORTHO05D009346 6.3e-16 87.0 62 62.9
SalBow6G4489 Salvia bowleyana HOM05D000358 ORTHO05D009346 6.3e-16 87.0 56 71.4
MSTRG.12558 Avicennia marina HOM05D000358 ORTHO05D009346 1.4e-15 85.9 56 62.5
Phvul.001G152500 Phaseolus vulgaris HOM05D000358 ORTHO05D009346 1.4e-15 85.9 67 62.7
Prupe.8G239600 Prunus persica HOM05D000358 ORTHO05D009346 1.4e-15 85.9 63 63.5
arahy.Tifrunner.gnm1.ann1.1D6AAZ Arachis hypogaea HOM05D000358 ORTHO05D009346 1.8e-15 85.5 56 67.9
arahy.Tifrunner.gnm1.ann1.M7C8NM Arachis hypogaea HOM05D000358 ORTHO05D009346 1.8e-15 85.5 56 67.9
Gohir.A11G123500 Gossypium hirsutum HOM05D000358 ORTHO05D009346 1.8e-15 85.5 62 64.5
Aqoxy2G03373 Aquilegia oxysepala HOM05D000358 ORTHO05D009346 2.4e-15 85.1 63 58.7
FvH4_2g23371 Fragaria vesca HOM05D000358 ORTHO05D009346 2.4e-15 85.1 59 69.5
RcHm_v2.0_Chr6g0290831 Rosa chinensis HOM05D000358 ORTHO05D009346 2.4e-15 85.1 58 70.7
Lj1g0011093 Lotus japonicus HOM05D000358 ORTHO05D009346 3.1e-15 84.7 62 66.1
PSO761G0166 Papaver somniferum HOM05D000358 ORTHO05D009346 3.1e-15 84.7 61 59.0
CiPaw.07G090600 Carya illinoinensis HOM05D000358 ORTHO05D009346 4.1e-15 84.3 53 73.6
Migut.N02045 Erythranthe guttata HOM05D000358 ORTHO05D009346 4.1e-15 84.3 54 68.5
TPR.G35683 Trifolium pratense HOM05D000358 ORTHO05D009346 4.1e-15 84.3 56 71.4
TAR636G2394 Trochodendron aralioides HOM05D000358 ORTHO05D009346 4.1e-15 84.3 63 63.5
AUR62028609 Chenopodium quinoa HOM05D000358 ORTHO05D009346 5.3e-15 84.0 67 61.2
Cc01_g19380 Coffea canephora HOM05D000358 ORTHO05D009346 5.3e-15 84.0 64 60.9
PSO210G0760 Papaver somniferum HOM05D000358 ORTHO05D009346 6.9e-15 83.6 61 59.0
A09p02150 Brassica napus HOM05D000358 ORTHO05D009346 1.2e-14 82.8 59 64.4
GSVIVG01001163001 Vitis vinifera HOM05D000358 ORTHO05D009346 1.2e-14 82.8 60 63.3
BraA09t35864Z Brassica rapa HOM05D000358 ORTHO05D009346 2.0e-14 82.0 59 62.7
Sopen09g027050 Solanum pennellii HOM05D000358 ORTHO05D009346 2.6e-14 81.6 59 62.7
Lalb_Chr01g0020121 Lupinus albus HOM05D000358 ORTHO05D009346 3.4e-14 81.3 55 69.1
Nitab4.5_0004318g0030 Nicotiana tabacum HOM05D000358 ORTHO05D009346 3.4e-14 81.3 59 61.0
Hund09500 Selenicereus undatus HOM05D000358 ORTHO05D009346 4.5e-14 80.9 56 67.9
Carub.0006s3438 Capsella rubella HOM05D000358 ORTHO05D009346 5.9e-14 80.5 56 66.1
Medtr7g095090 Medicago truncatula HOM05D000358 ORTHO05D009346 5.9e-14 80.5 59 66.1
BcaC04g24011 Brassica carinata HOM05D000358 ORTHO05D009346 7.7e-14 80.1 56 64.3
BolC9t53153H Brassica oleracea HOM05D000358 ORTHO05D009346 7.7e-14 80.1 56 64.3
CsaV3_6G037210 Cucumis sativus L. HOM05D000358 ORTHO05D009346 7.7e-14 80.1 59 61.0
Nitab4.5_0005971g0010 Nicotiana tabacum HOM05D000358 ORTHO05D009346 7.7e-14 80.1 59 59.3
Peaxi162Scf00641g00315 Petunia axillaris HOM05D000358 ORTHO05D009346 7.7e-14 80.1 60 63.3
Sp6g02670 Schrenkiella parvula HOM05D000358 ORTHO05D009346 1.0e-13 79.7 56 66.1
BcaB05g23661 Brassica carinata HOM05D000358 ORTHO05D009346 1.3e-13 79.3 56 64.3
BcaC03g16171 Brassica carinata HOM05D000358 ORTHO05D009346 1.3e-13 79.3 56 64.3
C02p39090 Brassica napus HOM05D000358 ORTHO05D009346 1.3e-13 79.3 56 64.3
C09p02250 Brassica napus HOM05D000358 ORTHO05D009346 1.3e-13 79.3 56 64.3
BolC2t09919H Brassica oleracea HOM05D000358 ORTHO05D009346 1.3e-13 79.3 56 64.3
A02p24950 Brassica napus HOM05D000358 ORTHO05D009346 1.7e-13 79.0 56 64.3
BraA02t07485Z Brassica rapa HOM05D000358 ORTHO05D009346 1.7e-13 79.0 56 64.3
Thhalv10029025m.g Eutrema salsugineum HOM05D000358 ORTHO05D009346 1.7e-13 79.0 57 63.2
AL6G50280 Arabidopsis lyrata HOM05D000358 ORTHO05D009346 2.2e-13 78.6 56 62.5
AT4G02725 Arabidopsis thaliana HOM05D000358 ORTHO05D009346 2.2e-13 78.6 56 62.5
CARHR251060 Cardamine hirsuta HOM05D000358 ORTHO05D009346 2.2e-13 78.6 56 64.3
Sed0015724 Sechium edule HOM05D000358 ORTHO05D009346 2.9e-13 78.2 63 58.7
ECA247G2961 Erigeron canadensis HOM05D000358 ORTHO05D009346 3.8e-13 77.8 56 64.3
SMO180G0003 Selaginella moellendorffii HOM05D000358 ORTHO05D009346 3.8e-13 77.8 59 59.3
Zm00001eb054110 Zea mays HOM05D000358 ORTHO05D009346 3.8e-13 77.8 60 56.7
SMO340G0322 Selaginella moellendorffii HOM05D000104 ORTHO05D004059 8.5e-13 76.6 60 56.7
HPP92_009591 Vanilla planifolia HOM05D002842 ORTHO05D003177 1.4e-12 75.9 65 55.4
unitig_899.g15068 Utricularia gibba HOM05D000454 ORTHO05D000591 1.9e-12 75.5 60 60.0
Solyc09g065300.4 Solanum lycopersicum HOM05D000358 ORTHO05D009346 3.2e-12 74.7 66 59.1
Potri.005G210700 Populus trichocarpa HOM05D000358 ORTHO05D009346 4.2e-12 74.3 63 60.3
THA.LOC104801239 Tarenaya hassleriana HOM05D000358 ORTHO05D009346 1.2e-11 72.8 62 50.0
Pp3c26_14500 Physcomitrium patens HOM05D000358 ORTHO05D009346 1.4e-10 69.3 62 50.0
Aa31LG5G2370 Aethionema arabicum HOM05D000358 ORTHO05D009346 3.9e-10 67.8 55 60.0
ClCG07G000330 Citrullus lanatus HOM05D000358 ORTHO05D009346 5.1e-10 67.4 43 69.8
Mapoly0004s0031 Marchantia polymorpha HOM05D000358 ORTHO05D009346 4.3e-09 64.3 60 50.0
vmacro02584 Vaccinium macrocarpon HOM05D000358 ORTHO05D009346 2.8e-08 61.6 62 51.6
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 2.6e-06 55.1 50 56.0
Sc17g0001440 Simmondsia chinensis HOM05D000358 ORTHO05D009346 4.5e-06 54.3 37 70.3
ATR0332G065 Amborella trichopoda HOM05D000358 ORTHO05D009346 5.9e-06 53.9 35 57.1


User provided reference genes

Program Settings