Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 2.1e-239 832.0 444 100.0
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 1.3e-124 450.7 411 59.6
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 1.1e-123 447.6 414 58.9
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 3.1e-121 439.5 385 61.6
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 6.8e-121 438.3 412 59.2
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 4.9e-119 432.2 418 59.6
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 9.2e-118 427.9 417 58.5
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 3.5e-117 426.0 413 56.4
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 6.6e-116 421.8 410 56.6
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 2.5e-115 419.9 411 57.7
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 2.1e-114 416.8 412 56.8
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.8e-114 416.4 409 56.7
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 5.2e-113 412.1 411 54.7
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.2e-112 411.0 414 56.5
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.5e-112 410.6 411 54.7
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.0e-112 410.2 411 55.2
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 2.6e-112 409.8 416 57.5
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 2.9e-111 406.4 411 56.7
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 6.4e-111 405.2 411 54.3
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 8.4e-111 404.8 407 56.8
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 1.1e-110 404.4 417 57.8
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 3.2e-110 402.9 398 57.0
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 4.6e-109 399.1 417 55.2
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.9e-107 393.7 410 55.4
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 7.3e-107 391.7 415 56.1
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 3.6e-106 389.4 408 54.9
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.8e-105 387.1 413 55.2
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 4.0e-105 386.0 408 54.9
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 5.3e-105 385.6 411 55.5
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 9.0e-105 384.8 417 54.2
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.5e-104 384.0 412 52.9
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 9.9e-104 381.3 410 52.7
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 2.9e-103 379.8 413 54.5
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 2.4e-102 376.7 418 54.3
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 9.3e-102 374.8 408 53.9
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 6.0e-101 372.1 359 57.1
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 1.3e-100 370.9 407 53.1
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 1.3e-100 370.9 406 52.5
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 2.3e-100 370.2 398 56.3
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 7.3e-99 365.2 348 57.8
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 8.1e-98 361.7 409 51.8
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 3.1e-97 359.8 416 50.0
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 4.0e-97 359.4 388 57.5
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 5.3e-97 359.0 349 58.7
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 1.2e-96 357.8 380 53.7
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 9.9e-96 354.8 407 49.9
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 1.4e-94 350.9 452 49.8
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 1.9e-94 350.5 415 52.3
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 6.0e-93 345.5 310 61.6
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 8.7e-92 341.7 420 48.8
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.9e-91 340.5 417 50.1
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 7.4e-91 338.6 417 49.2
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 1.3e-90 337.8 417 49.4
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.6e-90 337.4 396 54.3
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 2.1e-90 337.0 410 50.2
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 2.0e-88 330.5 308 57.1
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.6e-88 330.1 408 49.3
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 3.4e-88 329.7 397 51.9
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 3.4e-88 329.7 484 44.8
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 2.2e-87 327.0 417 49.4
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 4.9e-87 325.9 408 47.1
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 3.9e-84 316.2 398 51.3
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 5.1e-84 315.8 282 60.3
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 5.1e-84 315.8 417 47.2
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 8.7e-84 315.1 415 47.7
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 5.7e-83 312.4 417 46.8
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 1.8e-81 307.4 312 56.4
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 3.1e-81 306.6 407 46.4
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.1e-81 306.6 314 57.6
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 4.5e-80 302.8 390 49.5
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 1.7e-79 300.8 437 44.4
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.9e-78 297.4 445 45.6
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.2e-77 294.7 408 46.1
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 3.5e-77 293.1 310 53.9
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.8e-76 290.8 364 48.1
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 5.7e-75 285.8 413 44.8
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.1e-73 281.6 358 49.4
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.9e-71 273.5 288 54.5
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 3.2e-70 270.0 402 45.5
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 5.1e-68 262.7 368 45.4
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 8.8e-68 261.9 258 56.2
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.8e-66 256.9 368 46.5
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 6.3e-66 255.8 404 44.8
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.4e-65 253.8 311 48.9
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 1.5e-64 251.1 309 47.9
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 2.6e-64 250.4 377 45.6
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 7.7e-64 248.8 407 44.2
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 1.3e-63 248.1 408 42.4
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.4e-62 244.6 324 46.9
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 7.2e-62 242.3 354 46.6
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.8e-60 237.7 378 41.0
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 6.7e-60 235.7 399 42.1
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 2.6e-59 233.8 370 43.2
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 9.7e-59 231.9 355 46.8
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 2.5e-54 217.2 338 43.2
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.2e-53 214.9 339 41.6
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 9.7e-51 205.3 268 49.6
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 1.2e-45 188.3 376 37.0
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 2.3e-44 184.1 370 39.5
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 1.3e-42 178.3 394 38.3
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.1e-41 175.3 222 45.0
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 3.1e-41 173.7 339 39.8
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 5.9e-40 169.5 337 40.4
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 1.9e-38 164.5 335 38.8
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 1.6e-37 161.4 413 35.1
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 6.1e-37 159.5 275 38.9
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 1.0e-36 158.7 353 37.4
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 2.3e-36 157.5 352 37.8
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 4.0e-36 156.8 353 37.7
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 5.2e-36 156.4 353 37.4
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 5.2e-36 156.4 353 37.4
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 8.8e-36 155.6 347 37.2
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 8.3e-34 149.1 332 36.4
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.2e-32 145.2 332 36.1
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 1.2e-32 145.2 335 37.6
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.2e-32 145.2 194 43.8
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.6e-32 144.8 341 37.0
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 1.7e-31 141.4 342 36.5
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.7e-31 141.4 335 37.3
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 2.3e-31 141.0 312 34.9
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 5.6e-30 136.3 333 36.9
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 2.1e-29 134.4 352 34.1
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.4e-25 121.7 420 32.1
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 7.0e-25 119.4 267 36.7
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 9.5e-22 109.0 234 38.5
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 2.1e-21 107.8 381 29.7
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 1.8e-20 104.8 121 51.2
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 1.2e-19 102.1 223 35.4
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 4.9e-18 96.7 116 51.7
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 4.9e-18 96.7 459 27.9
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 2.3e-15 87.8 98 51.0
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 3.9e-15 87.0 174 37.9
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 5.0e-15 86.7 382 27.7
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 4.3e-14 83.6 76 53.9
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 4.0e-12 77.0 174 34.5
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 3.4e-11 73.9 191 33.5
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 9.2e-09 65.9 210 30.0
Dinv07115 Davidia involucrata HOM05D005141 ORTHO05D030953 6.6e-07 59.7 66 60.6
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 1.9e-06 58.2 119 33.6
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 1.9e-06 58.2 119 33.6
Lj7C714T1 Lonicera japonica HOM05D005141 ORTHO05D030953 2.5e-06 57.8 74 50.0
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 9.5e-06 55.8 60 48.3


User provided reference genes

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