Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01738 Eucalyptus grandis HOM05D000646 ORTHO05D009105 6.6e-31 136.7 69 100.0
Eucgr.C01740 Eucalyptus grandis HOM05D000646 ORTHO05D009105 6.9e-12 73.6 47 80.9
VMungo1309G2095 Vigna mungo HOM05D000646 ORTHO05D009105 1.3e-10 69.3 80 48.8
Potri.006G254500 Populus trichocarpa HOM05D000646 ORTHO05D009105 6.4e-10 67.0 47 74.5
QL02p021720 Quercus lobata HOM05D000646 ORTHO05D009105 6.4e-10 67.0 40 80.0
Sabra06G0198900 Salix brachista HOM05D000038 ORTHO05D000423 6.4e-10 67.0 47 74.5
Duzib187G1113 Durio zibethinus HOM05D000646 ORTHO05D009105 8.4e-10 66.6 46 71.7
Lalb_Chr23g0268511 Lupinus albus HOM05D000646 ORTHO05D009105 1.1e-09 66.2 80 45.0
Dinv08650 Davidia involucrata HOM05D000646 ORTHO05D009105 1.9e-09 65.5 43 74.4
Thecc.09G024900 Theobroma cacao HOM05D000646 ORTHO05D009105 1.9e-09 65.5 46 71.7
GSVIVG01035858001 Vitis vinifera HOM05D000646 ORTHO05D009105 1.9e-09 65.5 43 74.4
Cpa.g.sc217.1 Carica papaya HOM05D000646 ORTHO05D009105 2.4e-09 65.1 40 77.5
Phvul.009G093000 Phaseolus vulgaris HOM05D000646 ORTHO05D009105 2.4e-09 65.1 80 46.2
PGR031G0023 Punica granatum HOM05D000646 ORTHO05D009105 2.4e-09 65.1 43 74.4
EL10Ac2g04229 Beta vulgaris HOM05D000646 ORTHO05D009105 3.2e-09 64.7 40 75.0
Medtr3g107060 Medicago truncatula HOM05D000646 ORTHO05D009105 3.2e-09 64.7 80 46.2
arahy.Tifrunner.gnm1.ann1.JA8ULA Arachis hypogaea HOM05D000646 ORTHO05D009105 4.2e-09 64.3 76 47.4
arahy.Tifrunner.gnm1.ann1.QIQ2JJ Arachis hypogaea HOM05D000646 ORTHO05D009105 4.2e-09 64.3 76 47.4
Lj1g0011836 Lotus japonicus HOM05D000646 ORTHO05D009105 4.2e-09 64.3 80 46.2
Prupe.1G481000 Prunus persica HOM05D000646 ORTHO05D009105 4.2e-09 64.3 43 67.4
RcHm_v2.0_Chr6g0297961 Rosa chinensis HOM05D000646 ORTHO05D009105 4.2e-09 64.3 80 41.2
Sc09g0008260 Simmondsia chinensis HOM05D000646 ORTHO05D009105 5.4e-09 63.9 39 79.5
Actinidia14603 Actinidia chinensis HOM05D000646 ORTHO05D009105 7.1e-09 63.5 43 69.8
Gorai.010G115200 Gossypium raimondii HOM05D000646 ORTHO05D009105 7.1e-09 63.5 67 58.2
Gohir.A06G098220 Gossypium hirsutum HOM05D000646 ORTHO05D009105 9.3e-09 63.2 46 69.6
Gohir.D06G100300 Gossypium hirsutum HOM05D000646 ORTHO05D009105 9.3e-09 63.2 46 69.6
Lj7A723T40 Lonicera japonica HOM05D000646 ORTHO05D009105 9.3e-09 63.2 43 67.4
CiPaw.07G223200 Carya illinoinensis HOM05D000646 ORTHO05D009105 1.6e-08 62.4 43 69.8
Rhsim07G0158200 Rhododendron simsii HOM05D000646 ORTHO05D009105 1.6e-08 62.4 43 67.4
TAR383G0487 Trochodendron aralioides HOM05D000646 ORTHO05D009105 1.6e-08 62.4 40 75.0
vmacro05176 Vaccinium macrocarpon HOM05D000646 ORTHO05D009105 2.1e-08 62.0 70 47.1
BcaNung03588 Brassica carinata HOM05D000646 ORTHO05D009105 2.7e-08 61.6 80 38.8
BcaNung03953 Brassica carinata HOM05D000646 ORTHO05D009105 2.7e-08 61.6 80 38.8
AUR62012394 Chenopodium quinoa HOM05D000646 ORTHO05D009105 2.7e-08 61.6 35 82.9
AUR62031510 Chenopodium quinoa HOM05D000646 ORTHO05D009105 2.7e-08 61.6 35 82.9
Ca_15737_v3 Cicer arietinum L. HOM05D000646 ORTHO05D009105 2.7e-08 61.6 80 43.8
Glyma.06G068200 Glycine max HOM05D000646 ORTHO05D009105 2.7e-08 61.6 47 63.8
THA.LOC104803658 Tarenaya hassleriana HOM05D000646 ORTHO05D009105 2.7e-08 61.6 47 61.7
TPR.G3114 Trifolium pratense HOM05D000646 ORTHO05D009105 2.7e-08 61.6 47 63.8
C07p59190 Brassica napus HOM05D000646 ORTHO05D009105 3.5e-08 61.2 47 59.6
BolC7t46363H Brassica oleracea HOM05D000646 ORTHO05D009105 3.5e-08 61.2 47 59.6
CSS0034392 Camellia sinensis var. sinensis HOM05D000646 ORTHO05D009105 3.5e-08 61.2 43 69.8
Ciclev10008868m.g Citrus clementina HOM05D000646 ORTHO05D009105 3.5e-08 61.2 47 66.0
Nn8g39481 Nelumbo nucifera HOM05D000646 ORTHO05D009105 3.5e-08 61.2 40 72.5
Psat5g028800 Pisum sativum HOM05D000646 ORTHO05D009105 3.5e-08 61.2 79 45.6
Haze_21520 Corylus avellana HOM05D000646 ORTHO05D009105 4.6e-08 60.8 35 82.9
HanXRQChr13g0402951 Helianthus annuus HOM05D000646 ORTHO05D009105 4.6e-08 60.8 40 67.5
Manes.16G121900 Manihot esculenta HOM05D000646 ORTHO05D009105 4.6e-08 60.8 43 72.1
CANSAT01G3003 Cannabis sativa HOM05D000646 ORTHO05D009105 6.0e-08 60.5 47 57.4
Carub.0007s0826 Capsella rubella HOM05D000646 ORTHO05D009105 6.0e-08 60.5 81 39.5
MD15G1125400 Malus domestica HOM05D000646 ORTHO05D009105 6.0e-08 60.5 43 65.1
PSO017G5755 Papaver somniferum HOM05D000646 ORTHO05D009105 6.0e-08 60.5 80 41.2
Solyc08g059760.3 Solanum lycopersicum HOM05D000646 ORTHO05D009105 6.0e-08 60.5 42 66.7
Peaxi162Scf00785g00113 Petunia axillaris HOM05D000646 ORTHO05D009105 7.9e-08 60.1 79 41.8
Sopen08g009450 Solanum pennellii HOM05D000646 ORTHO05D009105 7.9e-08 60.1 42 66.7
Atru.chr7.2425 Acer truncatum HOM05D000646 ORTHO05D009105 1.0e-07 59.7 47 61.7
Aa31LG2G18240 Aethionema arabicum HOM05D000646 ORTHO05D009105 1.0e-07 59.7 40 67.5
ECA233G0229 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.0e-07 59.7 40 65.0
FvH4_2g29080 Fragaria vesca HOM05D000646 ORTHO05D009105 1.0e-07 59.7 43 62.8
FAN15G2271 Fragaria x ananassa HOM05D000646 ORTHO05D009105 1.0e-07 59.7 43 62.8
FAN24G2162 Fragaria x ananassa HOM05D000646 ORTHO05D009105 1.0e-07 59.7 43 62.8
FAN27G0875 Fragaria x ananassa HOM05D000646 ORTHO05D009105 1.0e-07 59.7 43 62.8
Sp7g30080 Schrenkiella parvula HOM05D000646 ORTHO05D009105 1.0e-07 59.7 81 39.5
PGSC0003DMG400032777 Solanum tuberosum HOM05D000646 ORTHO05D009105 1.0e-07 59.7 42 66.7
ATR1120G042 Amborella trichopoda HOM05D000646 ORTHO05D009105 1.3e-07 59.3 43 60.5
Lsat_1_v5_gn_6_21420 Lactuca sativa HOM05D000646 ORTHO05D009105 1.3e-07 59.3 39 69.2
PSO170G5186 Papaver somniferum HOM05D000646 ORTHO05D009105 1.8e-07 58.9 80 40.0
Sed0006311 Sechium edule HOM05D000646 ORTHO05D009105 1.8e-07 58.9 46 60.9
Hund25808 Selenicereus undatus HOM05D000646 ORTHO05D009105 1.8e-07 58.9 35 77.1
Thhalv10025686m.g Eutrema salsugineum HOM05D000646 ORTHO05D009105 2.3e-07 58.5 81 37.0
Nitab4.5_0000209g0170 Nicotiana tabacum HOM05D000646 ORTHO05D009105 2.3e-07 58.5 42 66.7
AL7G19520 Arabidopsis lyrata HOM05D000646 ORTHO05D009105 3.0e-07 58.2 81 38.3
AT4G32320 Arabidopsis thaliana HOM05D000646 ORTHO05D009105 3.0e-07 58.2 81 38.3
A03p61340 Brassica napus HOM05D000646 ORTHO05D009105 3.9e-07 57.8 36 69.4
BraA03t15178Z Brassica rapa HOM05D000646 ORTHO05D009105 3.9e-07 57.8 36 69.4
Nitab4.5_0010580g0030 Nicotiana tabacum HOM05D000646 ORTHO05D009105 3.9e-07 57.8 79 39.2
MELO3C011261.2 Cucumis melo HOM05D000646 ORTHO05D009105 5.1e-07 57.4 79 41.8
CsaV3_2G032090 Cucumis sativus L. HOM05D000646 ORTHO05D009105 5.1e-07 57.4 79 41.8
Oeu042700.2 Olea europaea HOM05D000646 ORTHO05D009105 5.1e-07 57.4 47 55.3
Pp3c17_7560 Physcomitrium patens HOM05D000646 ORTHO05D009105 6.7e-07 57.0 80 40.0
ClCG08G013360 Citrullus lanatus HOM05D000646 ORTHO05D009105 1.1e-06 56.2 45 60.0
Hma1.2p1_0000F.1_g000020 Hydrangea macrophylla HOM05D000646 ORTHO05D009105 1.1e-06 56.2 43 62.8
CDE04G2247 Ceratophyllum demersum HOM05D000646 ORTHO05D009105 1.5e-06 55.8 43 62.8
Aqoxy7G03681 Aquilegia oxysepala HOM05D000646 ORTHO05D009105 1.9e-06 55.5 42 61.9
CAN.G9.29 Capsicum annuum HOM05D000646 ORTHO05D009105 1.9e-06 55.5 39 64.1
MBI04_g29345_MAGBIO Magnolia biondii HOM05D000646 ORTHO05D009105 3.3e-06 54.7 33 75.8
TWI34G0736 Tripterygium wilfordii HOM05D000646 ORTHO05D009105 3.3e-06 54.7 40 60.0
MD08G1150400 Malus domestica HOM05D000646 ORTHO05D009105 5.6e-06 53.9 43 58.1
unitig_748.g8183 Utricularia gibba HOM05D000646 ORTHO05D009105 5.6e-06 53.9 43 53.5
Duzib150G0647 Durio zibethinus HOM05D000646 ORTHO05D009105 7.4e-06 53.5 46 58.7
SalBow4G2668 Salvia bowleyana HOM05D000646 ORTHO05D009105 7.4e-06 53.5 47 51.1


User provided reference genes

Program Settings