Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 7.6e-300 1033.1 535 100.0
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.0e-220 769.2 399 97.7
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 1.1e-194 683.7 528 65.0
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 5.6e-194 681.4 528 64.8
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.5e-191 673.3 518 66.6
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 2.6e-191 672.5 528 64.8
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 1.4e-189 666.8 528 64.6
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 3.5e-188 662.1 528 64.6
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 1.3e-187 660.2 533 64.0
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 3.9e-187 658.7 527 63.4
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 5.6e-186 654.8 525 62.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 5.6e-186 654.8 529 63.1
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.6e-185 653.3 534 63.3
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 3.6e-185 652.1 528 63.6
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 4.0e-184 648.7 529 63.5
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.5e-183 646.7 528 63.1
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.0e-183 646.4 527 62.6
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 1.3e-182 643.7 527 61.1
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 5.4e-181 638.3 532 61.3
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 1.2e-180 637.1 529 60.7
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 2.1e-180 636.3 524 62.4
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 3.5e-180 635.6 527 61.1
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.7e-179 633.3 527 61.3
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.3e-178 628.6 528 60.2
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.6e-177 625.5 530 59.6
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 6.2e-177 624.8 528 59.8
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 6.2e-177 624.8 527 60.0
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 8.1e-177 624.4 528 61.6
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 1.8e-176 623.2 530 61.9
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.1e-176 622.5 528 59.7
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 5.8e-175 618.2 527 59.0
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 2.9e-174 615.9 527 59.6
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.9e-173 613.2 529 60.3
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 7.1e-173 611.3 529 58.6
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.5e-172 609.0 528 58.5
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 2.3e-171 606.3 523 58.3
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 3.0e-171 605.9 522 60.7
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 2.5e-170 602.8 524 60.1
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 4.3e-170 602.1 511 61.8
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 4.3e-170 602.1 522 61.9
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 5.6e-170 601.7 527 58.3
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.3e-169 600.5 495 62.2
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 2.1e-169 599.7 533 58.7
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 4.8e-169 598.6 523 58.3
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 2.4e-168 596.3 523 59.5
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.9e-168 594.7 531 58.6
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.2e-167 594.0 554 57.6
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.2e-167 594.0 543 56.9
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.2e-167 594.0 528 59.3
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 2.6e-167 592.8 525 59.6
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 2.6e-167 592.8 522 60.9
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-166 590.5 525 59.4
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.3e-166 590.5 525 59.4
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 2.9e-166 589.3 527 57.3
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 2.9e-166 589.3 522 59.6
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 4.9e-166 588.6 568 54.4
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.4e-165 587.0 523 58.7
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 2.4e-165 586.3 523 58.9
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 9.3e-165 584.3 527 56.2
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 2.7e-164 582.8 531 55.9
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 3.9e-163 578.9 527 57.7
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 1.1e-162 577.4 527 56.5
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 1.1e-162 577.4 533 56.1
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 1.5e-162 577.0 523 59.7
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.5e-162 577.0 564 55.5
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.3e-162 575.5 464 63.6
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 2.1e-161 573.2 531 55.4
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 2.8e-161 572.8 514 57.2
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.4e-160 570.5 527 57.3
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 7.6e-159 564.7 529 56.1
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 9.9e-159 564.3 534 55.8
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 6.4e-158 561.6 535 55.5
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 8.4e-158 561.2 530 54.5
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.8e-155 553.5 468 60.9
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 4.8e-153 545.4 528 54.2
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 2.6e-151 539.7 532 53.8
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 1.2e-148 530.8 514 54.5
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 3.5e-148 529.3 570 52.1
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.0e-147 527.7 413 65.6
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.3e-147 527.3 413 65.6
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 1.5e-146 523.9 531 51.8
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 1.4e-144 517.3 509 53.4
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 2.0e-143 513.5 527 53.1
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 2.6e-143 513.1 436 62.6
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 5.9e-143 511.9 531 53.1
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.0e-142 508.8 487 54.8
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 8.5e-142 508.1 524 53.4
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.1e-138 497.7 529 48.6
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 2.5e-138 496.5 527 48.8
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 5.0e-134 482.3 532 49.4
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.7e-132 476.5 533 46.7
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 3.0e-131 473.0 345 71.3
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 5.1e-131 472.2 505 52.3
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 5.3e-128 462.2 443 55.8
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 6.5e-126 455.3 527 46.5
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 1.4e-125 454.1 535 48.8
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 6.5e-118 428.7 480 47.3
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 4.7e-116 422.5 531 47.1
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 9.1e-112 408.3 556 42.6
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 5.6e-85 319.3 522 41.8
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 5.6e-85 319.3 522 41.8
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 9.8e-82 308.5 270 57.4
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.9e-77 294.3 379 46.4
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 4.3e-69 266.5 367 44.7
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.0e-66 257.7 531 30.7
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 2.9e-65 253.8 285 50.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 3.3e-61 240.4 261 48.7
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 4.0e-59 233.4 535 32.9
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 5.8e-58 229.6 539 29.3
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 1.6e-52 211.5 257 47.1
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 2.1e-52 211.1 257 47.1
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 1.6e-47 194.9 536 27.8
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 4.6e-47 193.4 417 30.2
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 4.5e-42 176.8 143 60.8
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 4.9e-41 173.3 129 66.7
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 4.5e-34 150.2 166 47.0
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 4.9e-33 146.7 222 40.1
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 3.2e-32 144.1 142 50.0
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 5.5e-32 143.3 163 46.0
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.1e-29 135.6 150 46.7
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 1.5e-29 135.2 325 30.2
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 1.3e-28 132.1 131 57.3
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.1e-27 129.0 131 56.5
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 1.2e-26 125.6 129 56.6
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 5.0e-25 120.2 269 34.2
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.2e-23 115.5 113 55.8
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.7e-20 105.1 238 34.5
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 4.8e-20 103.6 119 47.1
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 6.3e-20 103.2 293 27.0
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 9.4e-16 89.4 90 47.8
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 4.7e-15 87.0 95 46.3
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.4e-14 85.5 81 53.1
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.1e-14 83.6 152 34.9
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 4.4e-13 80.5 77 55.8
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 5.3e-11 73.6 69 53.6
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 7.0e-11 73.2 80 50.0
MCO12G231 Micromonas commoda HOM05D004744 ORTHO05D005655 3.8e-09 67.4 343 25.4
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 6.5e-09 66.6 44 68.2
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 1.8e-06 58.5 48 56.2
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 5.2e-06 57.0 33 78.8
Rhsim01G0220500 Rhododendron simsii HOM05D004744 ORTHO05D005655 5.2e-06 57.0 50 62.0
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 8.8e-06 56.2 75 38.7


User provided reference genes

Program Settings