Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.5e-74 280.0 136 100.0
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.2e-61 238.4 136 89.7
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.2e-57 226.5 134 85.1
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.4e-56 223.0 129 88.4
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.4e-53 211.1 132 84.8
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.3e-51 206.5 135 83.0
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.7e-51 206.1 132 84.1
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.3e-51 205.7 134 82.8
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.3e-41 173.3 92 94.6
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.4e-39 165.2 100 84.0
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.6e-33 146.4 87 83.9
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 4.7e-12 75.1 131 40.5
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 6.1e-12 74.7 135 38.5
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 3.0e-11 72.4 72 54.2
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.0e-11 72.4 126 40.5
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 3.9e-11 72.0 125 41.6
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.1e-11 71.6 124 38.7
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 6.7e-11 71.2 127 42.5
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 8.8e-11 70.9 127 39.4
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 8.8e-11 70.9 70 55.7
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.5e-10 70.1 124 38.7
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.6e-10 69.3 121 39.7
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 3.3e-10 68.9 127 40.9
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 3.3e-10 68.9 124 35.5
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.4e-10 68.6 72 52.8
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 4.4e-10 68.6 73 50.7
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 7.4e-10 67.8 70 52.9
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 9.7e-10 67.4 135 40.7
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 9.7e-10 67.4 128 37.5
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 9.7e-10 67.4 130 37.7
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 9.7e-10 67.4 130 38.5
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.3e-09 67.0 117 38.5
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 1.3e-09 67.0 73 47.9
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.2e-09 66.2 72 54.2
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 2.8e-09 65.9 118 43.2
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 3.7e-09 65.5 70 51.4
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.8e-09 65.1 101 41.6
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 4.8e-09 65.1 112 37.5
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.1e-08 63.9 134 36.6
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.1e-08 63.9 75 52.0
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.1e-08 63.9 75 52.0
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.1e-08 63.9 75 52.0
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.4e-08 63.5 136 38.2
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.4e-08 63.5 128 38.3
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.4e-08 63.5 76 48.7
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.4e-08 62.8 117 40.2
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.4e-08 62.8 70 50.0
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 3.1e-08 62.4 101 40.6
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 3.1e-08 62.4 101 41.6
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 3.1e-08 62.4 71 53.5
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 4.1e-08 62.0 70 54.3
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 4.1e-08 62.0 67 53.7
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 5.3e-08 61.6 122 38.5
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 5.3e-08 61.6 78 42.3
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.0e-08 61.2 101 40.6
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 1.2e-07 60.5 85 43.5
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 1.5e-07 60.1 107 41.1
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.0e-07 59.7 92 39.1
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 2.0e-07 59.7 75 44.0
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.0e-07 59.7 130 34.6
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 2.0e-07 59.7 69 46.4
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 2.0e-07 59.7 87 43.7
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.6e-07 59.3 76 42.1
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 2.6e-07 59.3 82 43.9
ATR0629G091 Amborella trichopoda HOM05D003969 ORTHO05D003125 3.4e-07 58.9 116 34.5
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 3.4e-07 58.9 79 48.1
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.5e-07 58.5 78 41.0
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 5.9e-07 58.2 136 37.5
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.9e-07 58.2 115 35.7
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 5.9e-07 58.2 70 51.4
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 5.9e-07 58.2 49 63.3
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 5.9e-07 58.2 49 63.3
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 7.7e-07 57.8 70 47.1
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 7.7e-07 57.8 90 42.2
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 7.7e-07 57.8 100 40.0
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 7.7e-07 57.8 100 40.0
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 7.7e-07 57.8 72 45.8
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 1.0e-06 57.4 104 39.4
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 1.0e-06 57.4 96 38.5
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.0e-06 57.4 71 42.3
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 1.0e-06 57.4 75 49.3
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.0e-06 57.4 119 36.1
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.0e-06 57.4 119 36.1
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 1.0e-06 57.4 122 37.7
Prupe.1G486000 Prunus persica HOM05D019695 ORTHO05D022679 1.0e-06 57.4 71 52.1
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 1.0e-06 57.4 71 47.9
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 1.3e-06 57.0 95 40.0
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 1.3e-06 57.0 126 41.3
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.7e-06 56.6 127 32.3
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 1.7e-06 56.6 105 39.0
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.7e-06 56.6 127 37.8
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.7e-06 56.6 74 43.2
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.2e-06 56.2 77 39.0
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 2.2e-06 56.2 126 34.9
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 2.2e-06 56.2 83 41.0
SGA_v2.0_scaffold64G21997 Striga asiatica HOM05D003969 ORTHO05D003125 2.2e-06 56.2 43 62.8
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.2e-06 56.2 71 47.9
MELO3C030306.2 Cucumis melo HOM05D008824 ORTHO05D003125 2.9e-06 55.8 113 38.9
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.9e-06 55.8 77 39.0
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.9e-06 55.8 78 39.7
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.9e-06 55.8 72 44.4
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.9e-06 55.8 72 44.4
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 3.8e-06 55.5 71 42.3
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 3.8e-06 55.5 85 40.0
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 3.8e-06 55.5 73 46.6
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 3.8e-06 55.5 69 47.8
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 3.8e-06 55.5 114 41.2
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 5.0e-06 55.1 78 42.3
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 5.0e-06 55.1 89 38.2
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 5.0e-06 55.1 89 39.3
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 5.0e-06 55.1 44 61.4
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 6.5e-06 54.7 133 30.8
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 6.5e-06 54.7 83 44.6
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 6.5e-06 54.7 71 46.5
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.5e-06 54.7 68 44.1
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 6.5e-06 54.7 70 47.1
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 6.5e-06 54.7 90 42.2
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 6.5e-06 54.7 90 42.2
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 8.5e-06 54.3 79 41.8
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 8.5e-06 54.3 143 35.0
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.5e-06 54.3 80 42.5
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 8.5e-06 54.3 70 50.0


User provided reference genes

Program Settings