Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.1e-56 223.0 108 100.0
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.3e-53 211.5 108 94.4
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.6e-53 210.7 108 94.4
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.8e-51 205.7 108 91.7
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.8e-50 200.7 110 90.9
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.2e-44 180.3 109 84.4
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.2e-39 166.4 100 84.0
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.0e-39 164.1 100 83.0
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.7e-36 154.8 93 82.8
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.0e-33 146.7 90 81.1
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.2e-33 145.6 97 78.4
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.7e-12 76.3 100 43.0
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.2e-12 75.9 93 46.2
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.2e-12 75.9 100 43.0
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 6.3e-12 74.3 110 39.1
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.1e-11 73.6 93 44.1
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.4e-11 72.4 87 46.0
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 3.1e-11 72.0 87 52.9
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 7.0e-11 70.9 109 39.4
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 1.2e-10 70.1 86 47.7
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 2.0e-10 69.3 71 50.7
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 2.6e-10 68.9 83 50.6
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.5e-10 68.2 81 48.1
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 5.9e-10 67.8 111 37.8
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 5.9e-10 67.8 62 53.2
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.3e-09 66.6 69 42.0
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.3e-09 66.6 68 52.9
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 2.2e-09 65.9 94 46.8
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 3.8e-09 65.1 89 41.6
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 5.0e-09 64.7 69 50.7
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 5.0e-09 64.7 71 42.3
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 5.0e-09 64.7 87 43.7
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 6.5e-09 64.3 77 50.6
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 6.5e-09 64.3 70 48.6
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 6.5e-09 64.3 81 46.9
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 8.5e-09 63.9 69 50.7
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 8.5e-09 63.9 88 42.0
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 8.5e-09 63.9 86 40.7
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.1e-08 63.5 93 40.9
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 1.1e-08 63.5 93 40.9
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.1e-08 63.5 72 50.0
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.5e-08 63.2 70 48.6
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.9e-08 62.8 107 40.2
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 1.9e-08 62.8 85 42.4
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.5e-08 62.4 75 48.0
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 2.5e-08 62.4 68 50.0
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 3.2e-08 62.0 68 47.1
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.2e-08 62.0 115 38.3
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.2e-08 62.0 115 38.3
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.2e-08 61.6 93 37.6
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 5.5e-08 61.2 89 39.3
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.5e-08 61.2 93 36.6
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 5.5e-08 61.2 98 40.8
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 5.5e-08 61.2 81 43.2
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 7.2e-08 60.8 93 36.6
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 9.4e-08 60.5 70 47.1
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 9.4e-08 60.5 77 45.5
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 9.4e-08 60.5 69 50.7
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 9.4e-08 60.5 88 42.0
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 1.2e-07 60.1 94 42.6
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.2e-07 60.1 107 37.4
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.2e-07 60.1 68 48.5
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.6e-07 59.7 96 41.7
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 1.6e-07 59.7 77 49.4
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.6e-07 59.7 96 39.6
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 1.6e-07 59.7 81 44.4
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.6e-07 59.7 80 47.5
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.6e-07 59.7 80 47.5
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 1.6e-07 59.7 77 46.8
ATR0629G091 Amborella trichopoda HOM05D003969 ORTHO05D003125 2.1e-07 59.3 89 42.7
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 2.1e-07 59.3 115 37.4
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 2.1e-07 59.3 92 41.3
Zm00001eb275140 Zea mays HOM05D021431 ORTHO05D003125 2.1e-07 59.3 69 46.4
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 2.7e-07 58.9 93 41.9
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.7e-07 58.9 69 49.3
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 2.7e-07 58.9 85 43.5
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.6e-07 58.5 107 38.3
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 3.6e-07 58.5 73 47.9
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.6e-07 58.5 87 42.5
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 3.6e-07 58.5 87 42.5
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 3.6e-07 58.5 79 46.8
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 4.7e-07 58.2 77 48.1
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 4.7e-07 58.2 102 39.2
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.7e-07 58.2 92 42.4
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 6.1e-07 57.8 82 46.3
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 6.1e-07 57.8 85 44.7
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 6.1e-07 57.8 91 38.5
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 6.1e-07 57.8 109 41.3
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 6.1e-07 57.8 69 43.5
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 8.0e-07 57.4 80 40.0
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 8.0e-07 57.4 80 43.8
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.0e-06 57.0 89 38.2
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 1.0e-06 57.0 69 40.6
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 1.0e-06 57.0 73 39.7
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 1.0e-06 57.0 73 39.7
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 1.0e-06 57.0 78 47.4
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.4e-06 56.6 82 40.2
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.4e-06 56.6 82 40.2
FAN15G0756 Fragaria x ananassa HOM05D019695 ORTHO05D022679 1.4e-06 56.6 69 46.4
ATR0763G001 Amborella trichopoda HOM05D003969 ORTHO05D003125 1.8e-06 56.2 88 37.5
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 1.8e-06 56.2 88 39.8
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 1.8e-06 56.2 89 41.6
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 1.8e-06 56.2 89 41.6
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 1.8e-06 56.2 82 42.7
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 2.3e-06 55.8 90 40.0
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 2.3e-06 55.8 96 37.5
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.3e-06 55.8 109 35.8
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 2.3e-06 55.8 68 45.6
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 2.3e-06 55.8 82 37.8
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 2.3e-06 55.8 75 42.7
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 2.3e-06 55.8 114 33.3
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 3.0e-06 55.5 80 41.2
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 3.0e-06 55.5 73 41.1
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 3.0e-06 55.5 90 40.0
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 3.0e-06 55.5 89 40.4
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 3.0e-06 55.5 89 40.4
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 3.0e-06 55.5 90 42.2
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 3.0e-06 55.5 68 48.5
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 4.0e-06 55.1 92 41.3
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 4.0e-06 55.1 91 41.8
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 4.0e-06 55.1 91 41.8
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 4.0e-06 55.1 86 38.4
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 4.0e-06 55.1 82 41.5
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 5.2e-06 54.7 90 38.9
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 5.2e-06 54.7 91 41.8
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 5.2e-06 54.7 90 38.9
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 5.2e-06 54.7 91 41.8
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 5.2e-06 54.7 100 37.0
FvH4_2g28320 Fragaria vesca HOM05D019695 ORTHO05D022679 5.2e-06 54.7 59 47.5
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 5.2e-06 54.7 59 47.5
FAN24G2106 Fragaria x ananassa HOM05D019695 ORTHO05D022679 5.2e-06 54.7 59 47.5
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 5.2e-06 54.7 75 44.0
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 6.7e-06 54.3 70 40.0
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 6.7e-06 54.3 49 53.1
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 6.7e-06 54.3 82 43.9
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 8.8e-06 53.9 55 43.6
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 8.8e-06 53.9 88 36.4
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 8.8e-06 53.9 81 42.0
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 8.8e-06 53.9 41 58.5
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.8e-06 53.9 93 38.7
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.8e-06 53.9 75 44.0


User provided reference genes

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