Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.5e-74 282.7 138 100.0
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 8.5e-70 266.9 138 94.2
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.4e-69 263.5 138 93.5
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.5e-66 256.1 140 91.4
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.3e-57 226.5 139 84.9
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.4e-53 210.3 108 94.4
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.1e-52 207.6 135 83.0
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.7e-47 190.7 132 78.8
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.1e-44 182.6 127 77.2
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.7e-36 155.6 93 84.9
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.7e-33 146.4 91 82.4
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.7e-12 75.1 129 40.3
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.1e-11 73.9 139 37.4
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 1.8e-11 73.2 143 37.1
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 4.0e-11 72.0 119 42.9
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 5.2e-11 71.6 128 41.4
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 5.2e-11 71.6 119 38.7
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 6.8e-11 71.2 119 47.1
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.2e-10 70.5 81 50.6
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 1.5e-10 70.1 83 53.0
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.5e-10 70.1 143 35.0
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.0e-10 69.7 129 38.8
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 4.4e-10 68.6 142 37.3
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 7.5e-10 67.8 111 38.7
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.3e-09 67.0 87 46.0
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.2e-09 66.2 81 49.4
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 2.9e-09 65.9 117 41.0
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 3.7e-09 65.5 104 44.2
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 4.9e-09 65.1 118 41.5
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 4.9e-09 65.1 130 31.5
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.9e-09 65.1 72 52.8
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 6.4e-09 64.7 71 49.3
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 8.3e-09 64.3 67 55.2
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 8.3e-09 64.3 74 48.6
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.4e-08 63.5 70 52.9
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.4e-08 63.5 70 52.9
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 1.9e-08 63.2 130 40.8
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 1.9e-08 63.2 119 41.2
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.9e-08 63.2 124 37.9
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 2.4e-08 62.8 71 43.7
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 2.4e-08 62.8 68 52.9
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 4.1e-08 62.0 94 44.7
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.1e-08 62.0 76 43.4
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 4.1e-08 62.0 141 39.7
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.1e-08 62.0 84 48.8
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 4.1e-08 62.0 84 48.8
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 4.1e-08 62.0 121 37.2
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 5.4e-08 61.6 68 47.1
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 5.4e-08 61.6 78 47.4
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 5.4e-08 61.6 77 48.1
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 5.4e-08 61.6 119 37.8
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 7.1e-08 61.2 113 35.4
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.1e-08 61.2 73 50.7
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 1.2e-07 60.5 132 37.9
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.6e-07 60.1 73 49.3
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.6e-07 60.1 106 39.6
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 1.6e-07 60.1 78 48.7
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 1.6e-07 60.1 71 50.7
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 1.6e-07 60.1 125 37.6
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 1.6e-07 60.1 67 52.2
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 2.1e-07 59.7 114 43.0
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 2.7e-07 59.3 112 40.2
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 2.7e-07 59.3 112 40.2
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 2.7e-07 59.3 77 49.4
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.7e-07 59.3 74 43.2
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 2.7e-07 59.3 138 35.5
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.7e-07 59.3 80 46.2
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 3.5e-07 58.9 82 48.8
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.5e-07 58.9 123 36.6
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 3.5e-07 58.9 70 51.4
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.5e-07 58.9 91 38.5
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.5e-07 58.9 113 38.9
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.5e-07 58.9 122 36.9
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.5e-07 58.9 122 36.9
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 3.5e-07 58.9 97 40.2
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 4.6e-07 58.5 91 38.5
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 4.6e-07 58.5 76 40.8
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 6.0e-07 58.2 90 42.2
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 6.0e-07 58.2 57 57.9
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 6.0e-07 58.2 69 44.9
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 6.0e-07 58.2 119 36.1
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 7.8e-07 57.8 114 37.7
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 7.8e-07 57.8 67 50.7
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 7.8e-07 57.8 57 57.9
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 1.0e-06 57.4 90 43.3
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 1.0e-06 57.4 89 42.7
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 1.0e-06 57.4 89 42.7
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 1.0e-06 57.4 124 33.1
Zm00001eb275140 Zea mays HOM05D021431 ORTHO05D003125 1.0e-06 57.4 69 44.9
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 1.3e-06 57.0 92 43.5
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 1.3e-06 57.0 90 41.1
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 1.3e-06 57.0 90 41.1
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 1.3e-06 57.0 55 49.1
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 1.3e-06 57.0 129 34.9
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.7e-06 56.6 107 39.3
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 1.7e-06 56.6 125 36.8
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 1.7e-06 56.6 90 44.4
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 1.7e-06 56.6 82 43.9
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 1.7e-06 56.6 98 44.9
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 2.3e-06 56.2 91 44.0
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 2.3e-06 56.2 91 44.0
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 2.3e-06 56.2 83 39.8
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 2.3e-06 56.2 99 35.4
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 2.3e-06 56.2 71 47.9
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 3.0e-06 55.8 91 44.0
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 3.0e-06 55.8 91 44.0
CARHR202220 Cardamine hirsuta HOM05D008824 ORTHO05D003125 3.0e-06 55.8 94 41.5
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 3.0e-06 55.8 105 39.0
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 3.0e-06 55.8 115 35.7
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.9e-06 55.5 141 32.6
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.9e-06 55.5 147 34.7
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.9e-06 55.5 147 34.7
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 5.1e-06 55.1 125 36.8
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 5.1e-06 55.1 104 38.5
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 5.1e-06 55.1 80 41.2
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 5.1e-06 55.1 76 40.8
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 5.1e-06 55.1 67 43.3
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.1e-06 55.1 125 32.8
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.1e-06 55.1 81 39.5
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 5.1e-06 55.1 87 42.5
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 5.1e-06 55.1 65 52.3
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 6.6e-06 54.7 51 54.9
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 6.6e-06 54.7 47 59.6
BcaNung07098 Brassica carinata HOM05D008824 ORTHO05D003125 6.6e-06 54.7 93 41.9
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.6e-06 54.7 92 41.3
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.6e-06 54.7 92 41.3
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 6.6e-06 54.7 79 38.0
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 6.6e-06 54.7 87 40.2
Sp6g32430 Schrenkiella parvula HOM05D008824 ORTHO05D003125 6.6e-06 54.7 89 42.7
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 8.6e-06 54.3 117 35.9


User provided reference genes

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