Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01632 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.7e-76 288.5 138 100.0
Eucgr.C01699 Eucalyptus grandis HOM05D003969 ORTHO05D003125 9.7e-74 280.0 138 96.4
Eucgr.C01639 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.7e-70 269.2 140 93.6
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 4.2e-69 264.6 138 93.5
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.2e-57 225.7 139 84.2
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.1e-52 207.6 134 82.8
Eucgr.C01690 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.4e-51 206.5 108 91.7
Eucgr.C01694 Eucalyptus grandis HOM05D003969 ORTHO05D003125 2.6e-47 192.2 129 80.6
Eucgr.C01698 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.6e-44 183.0 126 77.0
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 6.1e-36 154.5 93 83.9
Eucgr.C01640 Eucalyptus grandis HOM05D003969 ORTHO05D003125 5.7e-34 147.9 90 83.3
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.6e-13 78.2 129 41.1
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.6e-12 76.6 139 37.4
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 2.1e-12 76.3 119 43.7
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.8e-12 75.9 128 44.5
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 4.7e-12 75.1 137 39.4
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 4.7e-12 75.1 143 35.7
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 1.8e-11 73.2 119 39.5
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 5.2e-11 71.6 142 37.3
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 5.2e-11 71.6 127 45.7
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.5e-10 70.1 104 45.2
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 1.5e-10 70.1 122 35.2
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.5e-10 70.1 129 38.8
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.0e-10 69.7 77 50.6
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 3.4e-10 68.9 119 42.0
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 4.4e-10 68.6 103 43.7
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.4e-10 68.6 81 49.4
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 5.8e-10 68.2 69 50.7
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 7.5e-10 67.8 81 51.9
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 1.7e-09 66.6 108 41.7
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 1.7e-09 66.6 68 52.9
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.2e-09 66.2 107 43.0
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 2.2e-09 66.2 69 47.8
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 2.2e-09 66.2 111 36.9
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.9e-09 65.9 121 38.0
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.9e-09 65.9 80 51.2
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 3.7e-09 65.5 124 41.1
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 4.9e-09 65.1 122 38.5
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 6.4e-09 64.7 113 42.5
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 6.4e-09 64.7 125 39.2
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 8.3e-09 64.3 68 51.5
ClCG08G013530 Citrullus lanatus HOM05D008824 ORTHO05D003125 1.1e-08 63.9 130 40.8
Sed0014973 Sechium edule HOM05D003969 ORTHO05D003125 1.1e-08 63.9 119 38.7
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 1.4e-08 63.5 92 45.7
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.4e-08 63.5 87 41.4
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.4e-08 62.8 85 41.2
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 2.4e-08 62.8 81 46.9
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.4e-08 62.8 122 37.7
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.4e-08 62.8 122 37.7
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.2e-08 62.4 125 37.6
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 3.2e-08 62.4 104 36.5
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.2e-08 62.4 93 38.7
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 3.2e-08 62.4 125 37.6
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 3.2e-08 62.4 80 48.8
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 4.1e-08 62.0 73 50.7
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.1e-08 62.0 93 37.6
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 4.1e-08 62.0 68 50.0
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 5.4e-08 61.6 77 49.4
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.4e-08 61.6 93 37.6
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.4e-08 61.6 145 35.2
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.4e-08 61.6 145 35.2
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 5.4e-08 61.6 82 46.3
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 5.4e-08 61.6 119 36.1
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 1.2e-07 60.5 69 43.5
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 2.1e-07 59.7 66 45.5
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 2.1e-07 59.7 112 40.2
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 2.1e-07 59.7 112 40.2
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.1e-07 59.7 112 39.3
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 2.1e-07 59.7 132 37.9
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 2.1e-07 59.7 124 37.9
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.1e-07 59.7 68 48.5
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.7e-07 59.3 68 47.1
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.7e-07 59.3 113 37.2
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 2.7e-07 59.3 113 37.2
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 3.5e-07 58.9 94 43.6
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 3.5e-07 58.9 140 36.4
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 3.5e-07 58.9 77 48.1
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 3.5e-07 58.9 78 47.4
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 4.6e-07 58.5 92 40.2
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 4.6e-07 58.5 117 36.8
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 4.6e-07 58.5 81 38.3
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 4.6e-07 58.5 66 48.5
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 4.6e-07 58.5 84 42.9
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 4.6e-07 58.5 86 39.5
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.0e-07 58.2 84 46.4
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 6.0e-07 58.2 84 46.4
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 6.0e-07 58.2 117 39.3
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 6.0e-07 58.2 118 38.1
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 6.0e-07 58.2 81 45.7
TPR.G38870 Trifolium pratense HOM05D013068 ORTHO05D003125 6.0e-07 58.2 69 44.9
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 6.0e-07 58.2 68 51.5
ATR0629G091 Amborella trichopoda HOM05D003969 ORTHO05D003125 7.8e-07 57.8 111 37.8
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 7.8e-07 57.8 89 38.2
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 7.8e-07 57.8 107 36.4
Zm00001eb275140 Zea mays HOM05D021431 ORTHO05D003125 7.8e-07 57.8 59 50.8
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 1.0e-06 57.4 80 41.2
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.0e-06 57.4 73 47.9
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 1.3e-06 57.0 114 37.7
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 1.3e-06 57.0 90 42.2
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.3e-06 57.0 143 32.9
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 1.7e-06 56.6 90 42.2
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 1.7e-06 56.6 89 42.7
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 1.7e-06 56.6 89 42.7
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 1.7e-06 56.6 90 44.4
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.7e-06 56.6 87 42.5
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.7e-06 56.6 87 42.5
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.3e-06 56.2 70 44.3
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 2.3e-06 56.2 91 44.0
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 2.3e-06 56.2 91 44.0
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 2.3e-06 56.2 101 38.6
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 2.3e-06 56.2 68 50.0
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 2.3e-06 56.2 78 46.2
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 3.0e-06 55.8 92 43.5
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 3.0e-06 55.8 90 41.1
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 3.0e-06 55.8 91 44.0
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 3.0e-06 55.8 90 41.1
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 3.0e-06 55.8 91 44.0
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.0e-06 55.8 124 34.7
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 3.0e-06 55.8 88 38.6
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.0e-06 55.8 92 42.4
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 3.0e-06 55.8 97 37.1
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 3.0e-06 55.8 70 42.9
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.0e-06 55.8 128 32.8
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 3.9e-06 55.5 80 41.2
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 3.9e-06 55.5 96 37.5
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 3.9e-06 55.5 69 46.4
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 3.9e-06 55.5 70 42.9
ATR0763G001 Amborella trichopoda HOM05D003969 ORTHO05D003125 5.1e-06 55.1 88 37.5
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 5.1e-06 55.1 70 48.6
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 5.1e-06 55.1 131 32.1
CANSAT01G2013 Cannabis sativa HOM05D008824 ORTHO05D003125 5.1e-06 55.1 78 44.9
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 5.1e-06 55.1 124 33.1
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 5.1e-06 55.1 80 37.5
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 5.1e-06 55.1 80 37.5
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 5.1e-06 55.1 123 33.3
BcaNung07098 Brassica carinata HOM05D008824 ORTHO05D003125 6.6e-06 54.7 93 41.9
CARHR202220 Cardamine hirsuta HOM05D008824 ORTHO05D003125 6.6e-06 54.7 94 41.5
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 6.6e-06 54.7 110 34.5
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 6.6e-06 54.7 41 63.4
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 6.6e-06 54.7 41 63.4
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 8.6e-06 54.3 127 33.9
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 8.6e-06 54.3 110 36.4
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 8.6e-06 54.3 87 37.9
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 8.6e-06 54.3 118 38.1
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 8.6e-06 54.3 117 37.6
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 8.6e-06 54.3 148 32.4
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 8.6e-06 54.3 72 48.6
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.6e-06 54.3 110 39.1
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.6e-06 54.3 93 38.7


User provided reference genes

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