Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.4e-226 789.3 399 100.0
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 8.9e-221 770.0 399 97.7
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.7e-145 519.2 392 64.3
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 6.1e-145 518.1 392 64.8
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 1.1e-143 513.8 390 66.2
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 7.7e-140 501.1 392 63.8
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 7.7e-140 501.1 392 63.0
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 1.3e-139 500.4 392 63.3
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 5.0e-139 498.4 393 63.1
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 1.6e-137 493.4 389 61.7
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 4.0e-136 488.8 390 63.1
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 6.8e-136 488.0 391 61.9
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 1.5e-135 486.9 391 62.4
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 9.8e-135 484.2 392 62.5
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 1.7e-134 483.4 390 62.1
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 2.8e-134 482.6 391 60.1
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 3.7e-134 482.3 390 61.8
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 3.7e-134 482.3 395 62.3
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 4.8e-134 481.9 396 61.4
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 6.3e-134 481.5 390 61.8
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 1.8e-133 479.9 390 60.8
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 2.4e-133 479.6 386 61.9
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 7.0e-133 478.0 396 59.8
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 4.5e-132 475.3 392 60.7
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 1.0e-131 474.2 390 60.8
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.2e-131 473.0 391 59.3
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 1.9e-130 469.9 392 59.4
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 3.2e-130 469.2 394 58.1
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.2e-130 468.8 392 58.7
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 9.4e-130 467.6 392 58.7
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 6.1e-129 464.9 392 58.4
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 6.1e-129 464.9 391 59.1
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 8.0e-129 464.5 393 58.3
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.5e-127 460.3 393 59.8
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 2.0e-127 459.9 386 61.1
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 4.4e-127 458.8 394 60.4
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 4.4e-127 458.8 418 56.7
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 7.5e-127 458.0 381 59.3
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 2.2e-126 456.4 371 59.8
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 3.7e-126 455.7 375 61.9
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 3.7e-126 455.7 381 59.3
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 4.9e-126 455.3 397 59.4
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 6.3e-126 454.9 395 59.7
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 1.8e-125 453.4 391 58.3
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 3.1e-125 452.6 387 59.7
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 3.1e-125 452.6 397 58.4
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 9.1e-125 451.1 392 58.2
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 2.0e-124 449.9 386 61.7
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 2.0e-124 449.9 386 58.0
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 5.9e-124 448.4 392 56.1
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 1.7e-123 446.8 387 58.9
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 2.3e-123 446.4 354 61.9
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 2.9e-123 446.0 386 59.8
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 5.0e-123 445.3 393 57.3
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 1.1e-122 444.1 390 56.9
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 1.5e-122 443.7 386 60.9
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 1.9e-122 443.4 431 53.6
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 3.3e-122 442.6 389 58.9
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 5.6e-122 441.8 391 56.3
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 5.6e-122 441.8 391 56.8
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 1.6e-121 440.3 389 58.6
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 1.6e-121 440.3 389 58.6
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 4.7e-121 438.7 392 57.4
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 1.4e-120 437.2 391 56.3
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 2.3e-120 436.4 391 56.3
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 4.0e-120 435.6 387 57.9
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 4.0e-120 435.6 393 56.0
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 1.2e-119 434.1 387 57.4
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 1.2e-119 434.1 390 57.2
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 1.5e-119 433.7 395 55.9
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 4.9e-118 428.7 387 59.7
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 1.8e-117 426.8 386 54.9
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 1.6e-116 423.7 383 57.4
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 2.0e-116 423.3 393 54.5
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 5.0e-115 418.7 399 54.9
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 8.6e-115 417.9 396 54.5
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 1.2e-108 397.5 382 56.0
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.0e-107 392.1 373 54.4
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 1.1e-106 391.0 411 51.8
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 1.5e-106 390.6 388 51.3
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 9.5e-106 387.9 393 51.9
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 4.7e-105 385.6 378 53.4
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 1.1e-104 384.4 392 52.3
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.1e-104 382.9 351 56.4
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 7.5e-103 378.3 277 67.5
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 9.8e-103 377.9 277 67.5
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 1.3e-102 377.5 397 48.1
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 2.9e-102 376.3 395 50.9
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 5.4e-101 372.1 391 48.8
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 2.7e-100 369.8 397 48.4
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 4.6e-100 369.0 360 54.7
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-99 367.5 388 50.8
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 1.9e-98 363.6 307 60.3
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 9.5e-98 361.3 300 62.3
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 2.1e-97 360.1 391 49.6
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 2.0e-95 353.6 385 47.0
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 5.1e-91 339.0 389 49.9
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 2.4e-77 293.5 379 46.2
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 5.4e-77 292.4 377 43.2
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 4.6e-76 289.3 209 69.9
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 1.1e-69 268.1 385 43.4
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 1.1e-69 268.1 385 43.4
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 3.0e-67 260.0 367 43.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 5.5e-61 239.2 261 48.3
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 7.6e-55 218.8 388 33.0
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 9.3e-53 211.8 257 47.1
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 1.2e-52 211.5 257 47.1
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 4.2e-45 186.4 394 34.8
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.7e-41 174.5 143 60.1
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 5.3e-40 169.5 398 29.4
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 6.9e-40 169.1 129 65.1
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 1.2e-39 168.3 134 61.2
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 2.6e-39 167.2 394 29.9
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 7.2e-37 159.1 281 31.7
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 9.7e-34 148.7 166 46.4
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 1.1e-32 145.2 163 46.6
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 1.2e-31 141.7 138 55.1
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 2.2e-30 137.5 142 47.2
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 6.5e-30 136.0 150 46.7
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.1e-28 131.0 325 29.5
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 1.1e-24 118.6 269 33.8
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 5.3e-24 116.3 180 38.9
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.9e-23 112.8 113 54.9
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 1.0e-19 102.1 119 46.2
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 5.2e-19 99.8 114 49.1
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 2.7e-15 87.4 90 46.7
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.0e-14 85.5 81 53.1
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.5e-13 81.6 152 34.9
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 6.1e-12 76.3 69 55.1
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 4.4e-10 70.1 80 47.5
CsaV3_4G016180 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.1e-08 65.5 44 65.9
MCO12G231 Micromonas commoda HOM05D004744 ORTHO05D005655 1.4e-08 65.1 330 24.8
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 3.1e-08 63.9 144 29.9
TWI63G1552 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.6e-07 61.6 75 42.7
unitig_60.g25872 Utricularia gibba HOM05D004744 ORTHO05D005655 2.3e-06 57.8 48 54.2
CsaV3_5G015120 Cucumis sativus L. HOM05D004744 ORTHO05D005655 8.6e-06 55.8 33 75.8


User provided reference genes

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