Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 1.8e-114 416.0 216 100.0
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 7.9e-107 390.6 216 92.1
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 1.4e-106 389.8 216 92.1
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 5.1e-106 387.9 216 92.1
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 5.1e-106 387.9 216 91.7
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 8.8e-106 387.1 216 90.3
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 8.8e-106 387.1 216 90.3
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 2.6e-105 385.6 216 90.7
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 5.7e-105 384.4 216 90.3
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 1.3e-104 383.3 216 89.8
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 1.3e-104 383.3 216 89.8
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 89.8
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 2.2e-104 382.5 215 89.8
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 90.3
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.8e-104 382.1 216 90.3
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 3.7e-104 381.7 216 90.3
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 88.4
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 89.8
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 89.8
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 90.7
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 8.2e-104 380.6 216 89.8
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 89.4
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 1.1e-103 380.2 216 89.8
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 89.8
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 88.9
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 88.9
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 1.8e-103 379.4 216 88.0
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 2.4e-103 379.0 215 89.3
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.4e-103 379.0 216 89.8
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 4.1e-103 378.3 216 88.4
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 90.3
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 88.9
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 88.0
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.4
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.9
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 88.4
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 88.9
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 1.6e-102 376.3 216 89.8
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 2.0e-102 375.9 216 88.4
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 87.0
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 3.5e-102 375.2 215 87.9
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 87.5
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 88.0
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 88.0
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 88.4
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 87.5
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 220 87.7
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.6
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.0
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.4
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 88.0
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 88.9
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 86.6
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 88.9
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 88.4
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 87.0
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 89.4
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.1
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 87.0
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.6
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.0
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 88.0
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 87.5
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 2.9e-101 372.1 227 86.3
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 85.6
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 85.6
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 88.0
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.8e-101 371.7 214 88.3
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 85.6
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 85.6
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 86.6
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 8.5e-101 370.5 216 88.0
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 86.6
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 88.0
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 87.0
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 86.1
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 84.7
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 84.7
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 84.7
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 86.6
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 84.7
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 87.0
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 87.5
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 84.3
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 84.3
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 84.7
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 86.6
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 85.6
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 83.8
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 2.1e-99 365.9 216 86.6
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 86.6
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.7e-99 364.8 215 86.0
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 83.8
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 86.1
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 83.8
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 2.3e-98 362.5 216 85.2
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 85.2
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 82.9
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 1.5e-97 359.8 221 83.7
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 5.7e-97 357.8 217 86.2
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 7.5e-97 357.5 216 84.7
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 1.1e-95 353.6 199 91.5
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 9.1e-95 350.5 221 81.4
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 1.9e-92 342.8 216 83.3
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 5.5e-92 341.3 216 79.2
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 9.4e-92 340.5 216 76.9
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 1.2e-91 340.1 216 83.3
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 81.0
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 2.7e-91 339.0 216 81.0
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.0e-90 337.0 216 82.4
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 1.4e-90 336.7 221 79.6
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 3.4e-89 332.0 216 79.2
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 9.8e-89 330.5 216 79.6
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 1.3e-88 330.1 218 77.5
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 1.7e-88 329.7 216 78.7
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 8.3e-88 327.4 181 91.2
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 4.1e-87 325.1 216 75.9
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 1.2e-86 323.6 216 78.2
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 73.1
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 75.0
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 1.1e-84 317.0 215 78.1
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 1.1e-84 317.0 216 78.2
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 4.7e-83 311.6 165 92.1
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 2.3e-82 309.3 165 93.9
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 3.7e-80 302.0 216 74.5
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 6.3e-80 301.2 276 62.0
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 8.3e-80 300.8 165 89.7
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.1e-79 300.4 216 74.5
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 4.1e-79 298.5 216 74.1
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 2.3e-77 292.7 216 72.7
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 9.5e-76 287.3 217 69.1
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 1.2e-75 287.0 216 71.3
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.0e-74 283.9 216 69.0
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 5.2e-74 281.6 217 68.7
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.3e-72 276.9 216 70.8
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 4.9e-72 275.0 203 73.9
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 2.4e-71 272.7 353 49.0
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 3.5e-70 268.9 165 84.2
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.5e-68 262.7 180 80.0
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 2.3e-66 256.1 217 66.8
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 5.2e-66 255.0 144 81.9
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 8.9e-58 227.6 219 56.2
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 1.1e-55 220.7 233 53.2
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 6.8e-50 201.4 273 50.2
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 5.8e-49 198.4 108 85.2
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 5.8e-49 198.4 108 85.2
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 4.9e-48 195.3 136 77.9
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 2.7e-46 189.5 219 47.5
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.4e-42 176.4 135 71.9
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 3.1e-42 176.0 204 45.1
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 2.1e-38 163.3 114 77.2
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 6.0e-38 161.8 97 79.4
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 1.1e-36 157.5 81 92.6
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.5e-36 157.1 106 73.6
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.5e-36 156.4 84 83.3
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 1.4e-34 150.6 101 79.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 1.4e-34 150.6 101 79.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 1.4e-34 150.6 101 79.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 1.4e-34 150.6 101 79.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 1.4e-34 150.6 101 79.2
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 1.5e-33 147.1 81 85.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 4.8e-27 125.6 71 77.5
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 3.3e-20 102.8 63 85.7
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 4.3e-20 102.4 74 78.4
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.6e-17 93.2 68 76.5
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 4.8e-11 72.4 39 82.1
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.8e-10 70.5 39 79.5
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 6.9e-10 68.6 48 70.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 6.9e-10 68.6 48 70.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 6.9e-10 68.6 48 70.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 2.6e-09 66.6 48 68.8


User provided reference genes

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