Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01572 Eucalyptus grandis HOM05D004019 ORTHO05D005136 0.0e+00 4943.6 2525 100.0
TWI63G0705 Tripterygium wilfordii HOM05D004019 ORTHO05D005136 0.0e+00 3554.2 2550 72.8
Prupe.1G464500 Prunus persica HOM05D004019 ORTHO05D005136 0.0e+00 3553.8 2551 72.6
Ciclev10007225m.g Citrus clementina HOM05D004019 ORTHO05D005136 0.0e+00 3553.5 2546 72.2
Dinv14207 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3550.4 2543 72.5
Atru.chr7.2305 Acer truncatum HOM05D004019 ORTHO05D005136 0.0e+00 3542.3 2548 72.3
COL.COLO4_18737 Corchorus olitorius HOM05D004019 ORTHO05D005136 0.0e+00 3540.0 2544 72.8
RcHm_v2.0_Chr6g0312581 Rosa chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3536.1 2553 72.1
Thecc.09G037700 Theobroma cacao HOM05D004019 ORTHO05D005136 0.0e+00 3526.1 2545 72.8
PGR031G1071 Punica granatum HOM05D004019 ORTHO05D005136 0.0e+00 3514.2 2537 72.4
Potri.006G244900 Populus trichocarpa HOM05D004019 ORTHO05D005136 0.0e+00 3511.5 2555 72.0
Gorai.009G053000 Gossypium raimondii HOM05D004019 ORTHO05D005136 0.0e+00 3508.0 2544 72.1
CiPaw.07G216600 Carya illinoinensis HOM05D004019 ORTHO05D005136 0.0e+00 3505.7 2543 72.0
GSVIVG01035749001 Vitis vinifera HOM05D004019 ORTHO05D005136 0.0e+00 3488.4 2538 72.0
FvH4_2g30330 Fragaria vesca HOM05D004019 ORTHO05D005136 0.0e+00 3484.9 2550 71.3
MD15G1113500 Malus domestica HOM05D004019 ORTHO05D005136 0.0e+00 3483.3 2575 70.9
Dinv30236 Davidia involucrata HOM05D004019 ORTHO05D005136 0.0e+00 3483.0 2543 71.8
FAN24G2881 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 3477.2 2575 70.7
CANSAT25G1365 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3450.2 2550 70.2
CSS0034867 Camellia sinensis var. sinensis HOM05D004019 ORTHO05D005136 0.0e+00 3441.0 2544 70.8
TAR624G1332 Trochodendron aralioides HOM05D004019 ORTHO05D005136 0.0e+00 3435.6 2582 69.6
CANSAT56G4370 Cannabis sativa HOM05D004019 ORTHO05D005136 0.0e+00 3429.0 2555 69.7
Lj1g0020850 Lotus japonicus HOM05D004019 ORTHO05D005136 0.0e+00 3414.4 2536 70.3
Actinidia13300 Actinidia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3412.9 2536 69.8
Glyma.06G074700 Glycine max HOM05D004019 ORTHO05D005136 0.0e+00 3397.8 2533 70.1
Nn8g39221 Nelumbo nucifera HOM05D004019 ORTHO05D005136 0.0e+00 3397.1 2543 69.5
Lalb_Chr11g0064021 Lupinus albus HOM05D004019 ORTHO05D005136 0.0e+00 3392.1 2537 69.8
Sabra06G0191800 Salix brachista HOM05D004019 ORTHO05D005136 0.0e+00 3384.7 2604 69.0
Ca_15687_v3 Cicer arietinum L. HOM05D004019 ORTHO05D005136 0.0e+00 3362.0 2539 69.1
arahy.Tifrunner.gnm1.ann1.WYF2AC Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3357.8 2550 69.2
Medtr3g108360 Medicago truncatula HOM05D004019 ORTHO05D005136 0.0e+00 3328.5 2533 68.4
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 0.0e+00 3326.6 2533 68.1
Psat5g025600 Pisum sativum HOM05D004019 ORTHO05D005136 0.0e+00 3324.6 2539 68.5
CsaV3_3G046830 Cucumis sativus L. HOM05D004019 ORTHO05D005136 0.0e+00 3259.9 2548 66.7
arahy.Tifrunner.gnm1.ann1.P4KF2E Arachis hypogaea HOM05D004019 ORTHO05D005136 0.0e+00 3246.4 2540 67.8
Sed0026885 Sechium edule HOM05D004019 ORTHO05D005136 0.0e+00 3244.9 2542 66.4
Migut.A00257 Erythranthe guttata HOM05D004019 ORTHO05D005136 0.0e+00 3242.2 2542 66.9
Rhsim02G0185100 Rhododendron simsii HOM05D004019 ORTHO05D005136 0.0e+00 3241.4 2863 61.9
THA.LOC104803772 Tarenaya hassleriana HOM05D004019 ORTHO05D005136 0.0e+00 3226.8 2555 66.4
Aqoxy7G01749 Aquilegia oxysepala HOM05D004019 ORTHO05D005136 0.0e+00 3197.1 2549 66.0
Sopen08g021930 Solanum pennellii HOM05D004019 ORTHO05D005136 0.0e+00 3180.6 2542 65.7
MSTRG.25887 Avicennia marina HOM05D004019 ORTHO05D005136 0.0e+00 3169.8 2540 65.7
Phvul.009G099400 Phaseolus vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 3157.9 2231 73.5
PSO063G5962 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3149.8 2571 65.0
Carub.0004s0550 Capsella rubella HOM05D004019 ORTHO05D005136 0.0e+00 3129.7 2549 64.9
PSO782G0289 Papaver somniferum HOM05D004019 ORTHO05D005136 0.0e+00 3128.6 2573 64.5
HanXRQChr17g0539391 Helianthus annuus HOM05D004019 ORTHO05D005136 0.0e+00 3123.6 2571 65.1
Cc08_g08140 Coffea canephora HOM05D004019 ORTHO05D005136 0.0e+00 3121.6 2369 69.2
Sc09g0008920 Simmondsia chinensis HOM05D004019 ORTHO05D005136 0.0e+00 3118.6 2537 64.2
Sp4g05330 Schrenkiella parvula HOM05D004019 ORTHO05D005136 0.0e+00 3114.3 2554 64.6
AT2G25730 Arabidopsis thaliana HOM05D004019 ORTHO05D005136 0.0e+00 3113.9 2544 64.3
AL4G17350 Arabidopsis lyrata HOM05D004019 ORTHO05D005136 0.0e+00 3096.6 2545 64.2
Lsat_1_v5_gn_3_27801 Lactuca sativa HOM05D004019 ORTHO05D005136 0.0e+00 3092.0 2597 64.5
CARHR115530 Cardamine hirsuta HOM05D004019 ORTHO05D005136 0.0e+00 3089.7 2549 64.3
ECA246G1280 Erigeron canadensis HOM05D004019 ORTHO05D005136 0.0e+00 3071.6 2570 64.0
A03p27040 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3039.2 2540 63.5
C03p32450 Brassica napus HOM05D004019 ORTHO05D005136 0.0e+00 3034.2 2540 63.4
BraA03t11915Z Brassica rapa HOM05D004019 ORTHO05D005136 0.0e+00 3022.3 2572 62.8
BolC3t15586H Brassica oleracea HOM05D004019 ORTHO05D005136 0.0e+00 3018.8 2573 62.7
MBI03_g19627_MAGBIO Magnolia biondii HOM05D004019 ORTHO05D005136 0.0e+00 3004.2 2414 65.7
ATR1120G055 Amborella trichopoda HOM05D004019 ORTHO05D005136 0.0e+00 3002.6 2552 62.7
Manes.03G064200 Manihot esculenta HOM05D004019 ORTHO05D005136 0.0e+00 2956.4 2090 74.0
EL10Ac2g02527 Beta vulgaris HOM05D004019 ORTHO05D005136 0.0e+00 2955.2 2544 62.0
Aa31LG5G9950 Aethionema arabicum HOM05D004019 ORTHO05D005136 0.0e+00 2950.2 2564 62.2
AUR62024824 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2930.2 2543 61.4
AUR62032391 Chenopodium quinoa HOM05D004019 ORTHO05D005136 0.0e+00 2903.2 2543 61.1
Thhalv10000005m.g Eutrema salsugineum HOM05D004019 ORTHO05D005136 0.0e+00 2874.0 2237 67.5
SGA_v2.0_scaffold280G46835 Striga asiatica HOM05D004019 ORTHO05D005136 0.0e+00 2797.7 2603 59.7
Lj8C607G10 Lonicera japonica HOM05D004019 ORTHO05D005136 0.0e+00 2755.3 1872 75.8
QL12p030977 Quercus lobata HOM05D004019 ORTHO05D005136 0.0e+00 2744.9 1888 75.3
MELO3C003655.2 Cucumis melo HOM05D004019 ORTHO05D005136 0.0e+00 2719.9 2036 69.2
VMungo1309G1295 Vigna mungo HOM05D004019 ORTHO05D005136 0.0e+00 2561.6 1732 76.0
Gohir.D05G051300 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2496.1 1643 78.1
Zm00001eb161040 Zea mays HOM05D004019 ORTHO05D005136 0.0e+00 2345.1 2317 55.2
FAN20G0521 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 2336.6 1837 66.9
Gohir.A05G049400 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 2224.1 1736 67.6
DCAR_006256 Daucus carota HOM05D004019 ORTHO05D005136 0.0e+00 2122.8 1776 64.2
Oeu063261.5 Olea europaea HOM05D004019 ORTHO05D005136 0.0e+00 2115.5 1722 65.9
Mapoly0049s0060 Marchantia polymorpha HOM05D004019 ORTHO05D005136 0.0e+00 2026.5 2775 44.1
Pp3c19_2530 Physcomitrium patens HOM05D004019 ORTHO05D005136 0.0e+00 2023.8 2692 45.1
unitig_747.g21875 Utricularia gibba HOM05D004019 ORTHO05D005136 0.0e+00 2019.6 1690 63.5
Hma1.2p1_0140F.1_g063760 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1718.7 1187 73.5
Hma1.2p1_0140F.1_g063770 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 0.0e+00 1689.5 1178 74.4
SMO172G0089 Selaginella moellendorffii HOM05D004019 ORTHO05D005136 0.0e+00 1655.2 2550 41.8
Solyc08g068010.2 Solanum lycopersicum HOM05D004019 ORTHO05D005136 0.0e+00 1649.0 1146 74.5
Ah.12g060340 Amaranthus hybridus HOM05D004019 ORTHO05D005136 0.0e+00 1604.0 1418 62.2
Cpa.g.sc205.26 Carica papaya HOM05D004019 ORTHO05D005136 0.0e+00 1597.0 1099 76.1
vmacro08818 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 0.0e+00 1513.8 1151 70.4
Peaxi162Scf00105g00818 Petunia axillaris HOM05D004019 ORTHO05D005136 0.0e+00 1487.2 1144 69.7
CBR_g31401 Chara braunii HOM05D004019 ORTHO05D005136 0.0e+00 1462.2 2616 37.5
Nitab4.5_0000250g0110 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1455.3 1494 54.3
AagrBONN_evm.TU.Sc2ySwM_340.130 Anthoceros agrestis HOM05D004019 ORTHO05D005136 0.0e+00 1442.2 2664 36.7
CDE10G0881 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1397.1 1625 49.5
SEGI_05898 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 0.0e+00 1358.6 1199 61.6
FAN20G1524 Fragaria x ananassa HOM05D004019 ORTHO05D005136 0.0e+00 1321.6 854 79.4
Nitab4.5_0002393g0030 Nicotiana tabacum HOM05D004019 ORTHO05D005136 0.0e+00 1311.2 1479 50.2
HPP92_006443 Vanilla planifolia HOM05D004019 ORTHO05D005136 0.0e+00 1295.8 1175 61.0
CDE10G0547 Ceratophyllum demersum HOM05D004019 ORTHO05D005136 0.0e+00 1189.1 900 67.2
Gohir.A05G049350 Gossypium hirsutum HOM05D004019 ORTHO05D005136 0.0e+00 1179.9 745 80.9
vmacro11105 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.0e-285 986.1 673 76.1
Haze_21654 Corylus avellana HOM05D004019 ORTHO05D005136 6.8e-282 975.7 610 82.8
HPP92_006442 Vanilla planifolia HOM05D004019 ORTHO05D005136 4.1e-279 966.5 1132 49.1
vmacro11102 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 1.2e-270 938.3 1031 52.3
SHI11646 Sapria himalayana HOM05D004019 ORTHO05D000023 2.0e-262 911.0 1048 51.0
Haze_21655 Corylus avellana HOM05D004019 ORTHO05D005136 1.1e-250 872.1 633 71.6
Haze_21656 Corylus avellana HOM05D004019 ORTHO05D005136 2.5e-244 850.9 910 52.6
Ah.12g060350 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.5e-220 771.9 906 48.6
QL12p030952 Quercus lobata HOM05D004019 ORTHO05D005136 2.6e-201 708.0 740 53.4
SHI11647 Sapria himalayana HOM05D004019 ORTHO05D005136 6.5e-192 676.8 858 46.0
Nitab4.5_0000250g0120 Nicotiana tabacum HOM05D004019 ORTHO05D005136 6.1e-190 670.2 844 50.1
Cpa.g.sc205.24 Carica papaya HOM05D004019 ORTHO05D005136 3.1e-186 657.9 495 68.1
Peaxi162Scf00105g00812 Petunia axillaris HOM05D004019 ORTHO05D005136 6.7e-181 640.2 674 52.7
Solyc08g068040.3 Solanum lycopersicum HOM05D004019 ORTHO05D005136 1.9e-175 622.1 671 51.4
ClCG05G017320 Citrullus lanatus HOM05D004019 ORTHO05D005136 6.7e-173 613.6 679 50.1
Nitab4.5_0002393g0010 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.9e-169 600.5 384 77.3
Hund02996 Selenicereus undatus HOM05D004019 ORTHO05D005136 7.7e-169 600.1 613 57.9
Peaxi162Scf00105g00817 Petunia axillaris HOM05D004019 ORTHO05D005136 5.5e-167 594.0 489 61.3
Cpa.g.sc205.19 Carica papaya HOM05D004019 ORTHO05D005136 5.5e-159 567.4 491 61.1
DCAR_006255 Daucus carota HOM05D004019 ORTHO05D005136 3.4e-140 505.0 504 57.7
vmacro11103 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 5.8e-140 504.2 548 52.0
SalBow4G2655 Salvia bowleyana HOM05D004019 ORTHO05D005136 1.9e-127 462.6 477 52.2
Os01g0593000 Oryza sativa ssp. japonica HOM05D004019 ORTHO05D005136 7.3e-111 407.5 264 74.6
SEGI_01785 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 1.2e-108 400.2 515 44.9
vmacro11104 Vaccinium macrocarpon HOM05D004019 ORTHO05D005136 4.3e-103 381.7 239 84.5
Nitab4.5_0000250g0090 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.2e-90 339.0 180 91.7
unitig_747.g21874 Utricularia gibba HOM05D004019 ORTHO05D005136 1.6e-89 336.7 347 53.9
Hma1.2p1_0140F.1_g063780 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 3.5e-89 335.5 205 85.4
Ah.12g060330 Amaranthus hybridus HOM05D004019 ORTHO05D005136 1.0e-83 317.4 180 83.9
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 7.2e-74 284.6 328 50.0
DCAR_006257 Daucus carota HOM05D004019 ORTHO05D005136 2.3e-72 279.6 151 92.1
SEGI_29718 Sequoiadendron giganteum HOM05D004019 ORTHO05D005136 2.8e-70 272.7 158 82.3
SHI11644 Sapria himalayana HOM05D004019 ORTHO05D000014 2.5e-66 259.6 254 57.1
Cpa.g.sc205.16 Carica papaya HOM05D004019 ORTHO05D005136 3.2e-66 259.2 320 47.8
Haze_21653 Corylus avellana HOM05D004019 ORTHO05D005136 1.6e-65 256.9 219 63.5
Cfa013229 Carpinus fangiana HOM05D004019 ORTHO05D005136 3.9e-64 252.3 207 65.7
DCAR_006254 Daucus carota HOM05D004019 ORTHO05D005136 1.4e-53 217.2 306 44.1
Cc00_g31360 Coffea canephora HOM05D004019 ORTHO05D005136 5.5e-50 205.3 309 39.8
Cc08_g08730 Coffea canephora HOM05D000021 ORTHO05D000010 1.0e-48 201.1 306 40.8
Nitab4.5_0000250g0100 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.3e-48 199.9 336 38.1
PRCOL_00001920 Prasinoderma coloniale HOM05D004019 ORTHO05D005136 4.4e-47 195.7 1925 22.9
unitig_747.g21873 Utricularia gibba HOM05D004019 ORTHO05D005136 1.3e-46 194.1 306 39.9
PGR042G0250 Punica granatum HOM05D004019 ORTHO05D005136 6.1e-41 175.3 142 63.4
SHI11640 Sapria himalayana HOM05D004019 ORTHO05D000023 3.7e-38 166.0 174 50.6
HanXRQChr03g0075941 Helianthus annuus HOM05D004019 ORTHO05D005136 1.6e-36 160.6 105 76.2
Hma1.2p1_0140F.1_g063800 Hydrangea macrophylla HOM05D004019 ORTHO05D005136 2.7e-36 159.8 116 73.3
AUR62038490 Chenopodium quinoa HOM05D004019 ORTHO05D005136 1.1e-34 154.5 116 72.4
Solyc08g068030.1 Solanum lycopersicum HOM05D004019 ORTHO05D005136 4.0e-32 146.0 143 55.2
Prupe.5G099400 Prunus persica HOM05D004019 ORTHO05D005136 7.8e-28 131.7 87 75.9
MD00G1060000 Malus domestica HOM05D004019 ORTHO05D005136 9.5e-26 124.8 101 70.3
MD08G1211900 Malus domestica HOM05D004019 ORTHO05D005136 9.5e-26 124.8 101 70.3
Lsat_1_v5_gn_4_165520 Lactuca sativa HOM05D004019 ORTHO05D005136 1.7e-22 114.0 132 51.5
Prupe.5G112400 Prunus persica HOM05D004019 ORTHO05D005136 3.7e-22 112.8 121 54.5
Oeu022768.1 Olea europaea HOM05D004019 ORTHO05D005136 6.0e-20 105.5 120 47.5
Actinidia14324 Actinidia chinensis HOM05D004019 ORTHO05D005136 6.6e-19 102.1 132 51.5
Hund02993 Selenicereus undatus HOM05D004019 ORTHO05D000004 2.5e-18 100.1 75 68.0
TPR.G12424 Trifolium pratense HOM05D004019 ORTHO05D005136 5.2e-16 92.4 88 55.7
Medtr3g108370 Medicago truncatula HOM05D004019 ORTHO05D005136 2.0e-15 90.5 180 37.8
Actinidia36698 Actinidia chinensis HOM05D004019 ORTHO05D005136 2.2e-14 87.0 116 50.9
Cpa.g.sc205.23 Carica papaya HOM05D004019 ORTHO05D005136 3.7e-14 86.3 61 73.8
Actinidia31247 Actinidia chinensis HOM05D004019 ORTHO05D005136 1.1e-13 84.7 73 64.4
Glyma.04G073626 Glycine max HOM05D004019 ORTHO05D005136 1.4e-13 84.3 51 82.4
FvH4_2g30421 Fragaria vesca HOM05D004019 ORTHO05D035788 1.9e-13 84.0 83 48.2
SHI11643 Sapria himalayana HOM05D004019 ORTHO05D035247 2.7e-12 80.1 76 57.9
Haze_21651 Corylus avellana HOM05D004019 ORTHO05D005136 7.8e-12 78.6 45 86.7
Medtr3g109982 Medicago truncatula HOM05D000051 ORTHO05D000015 1.3e-11 77.8 204 33.3
Medtr3g107940 Medicago truncatula HOM05D004019 ORTHO05D000015 2.3e-11 77.0 104 46.2
Hund02997 Selenicereus undatus HOM05D004019 ORTHO05D005136 6.6e-11 75.5 51 70.6
FvH4_2g30290 Fragaria vesca HOM05D004019 ORTHO05D035247 1.1e-10 74.7 67 61.2
FAN24G2522 Fragaria x ananassa HOM05D004019 ORTHO05D035247 1.1e-10 74.7 67 61.2
Cc08_g08790 Coffea canephora HOM05D004019 ORTHO05D005136 2.1e-09 70.5 58 58.6
Actinidia23592 Actinidia chinensis HOM05D004019 ORTHO05D005136 4.7e-09 69.3 79 58.2
Cc00_g28950 Coffea canephora HOM05D004019 ORTHO05D005136 2.4e-08 67.0 58 58.6
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 2.6e-07 63.5 70 50.0
Psat5g042320 Pisum sativum HOM05D000051 ORTHO05D000015 4.4e-07 62.8 87 48.3


User provided reference genes

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