Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 1.5e-65 252.7 126 100.0
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.7e-65 250.8 126 99.2
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.0e-58 229.9 125 88.8
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.0e-58 229.9 125 89.6
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 1.0e-58 229.9 125 88.8
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.0e-58 229.9 124 87.9
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.3e-58 228.8 125 88.0
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 4.0e-58 228.0 125 88.8
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 8.9e-58 226.9 125 88.8
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 4.4e-57 224.6 125 88.0
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 5.7e-57 224.2 125 87.2
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 7.5e-57 223.8 125 87.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 7.5e-57 223.8 125 87.2
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 7.5e-57 223.8 125 87.2
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.3e-56 223.0 125 87.2
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.3e-56 223.0 125 86.4
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 3.7e-56 221.5 123 84.6
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 3.7e-56 221.5 123 84.6
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.1e-55 219.9 123 86.2
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.4e-55 219.5 125 84.8
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.4e-55 219.5 123 83.7
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 2.4e-55 218.8 123 86.2
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 2.4e-55 218.8 125 83.2
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 3.2e-55 218.4 125 81.6
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 7.0e-55 217.2 125 80.8
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 7.0e-55 217.2 125 80.8
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 7.0e-55 217.2 125 82.4
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.0e-54 215.7 120 84.2
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 3.5e-54 214.9 125 84.0
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 5.9e-54 214.2 126 81.0
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 7.8e-54 213.8 120 85.0
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.0e-53 213.4 126 81.7
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.0e-53 213.4 123 84.6
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.3e-53 213.0 126 81.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.7e-53 212.6 123 82.1
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 1.7e-53 212.6 125 82.4
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 3.9e-53 211.5 122 82.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.9e-53 211.5 122 82.8
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 5.0e-53 211.1 125 80.8
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 5.0e-53 211.1 122 82.8
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 5.0e-53 211.1 122 84.4
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.6e-53 210.7 160 69.4
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 6.6e-53 210.7 122 83.6
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 8.6e-53 210.3 123 79.7
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 8.6e-53 210.3 123 79.7
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 8.6e-53 210.3 122 83.6
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 8.6e-53 210.3 122 83.6
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 1.5e-52 209.5 125 79.2
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 1.5e-52 209.5 126 79.4
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.9e-52 209.1 122 82.0
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 1.9e-52 209.1 120 83.3
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.9e-52 209.1 120 83.3
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 2.5e-52 208.8 122 83.6
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 2.5e-52 208.8 123 82.9
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 3.3e-52 208.4 123 82.9
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.3e-52 208.4 125 81.6
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.3e-52 208.0 125 81.6
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 4.3e-52 208.0 123 79.7
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 7.3e-52 207.2 122 82.0
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 7.3e-52 207.2 122 82.8
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 9.5e-52 206.8 126 79.4
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 9.5e-52 206.8 125 80.0
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 9.5e-52 206.8 121 81.0
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.2e-51 206.5 126 79.4
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.2e-51 206.5 137 75.2
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.2e-51 206.5 121 81.0
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 1.2e-51 206.5 123 78.0
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.1e-51 205.7 123 77.2
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 2.8e-51 205.3 125 80.8
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 3.6e-51 204.9 126 78.6
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 4.7e-51 204.5 126 78.6
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 6.2e-51 204.1 125 80.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 8.0e-51 203.8 126 77.8
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.0e-50 203.4 126 77.8
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.0e-50 203.4 122 79.5
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.4e-50 203.0 126 77.0
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.8e-50 202.6 126 77.0
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.8e-50 202.6 126 77.0
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.8e-50 202.6 126 77.0
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.3e-50 202.2 126 77.0
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.3e-50 202.2 126 77.0
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.3e-50 202.2 126 78.6
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 4.0e-50 201.4 122 77.9
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 1.2e-49 199.9 126 75.4
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.2e-49 199.9 122 77.9
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.0e-49 199.1 122 79.5
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 3.4e-49 198.4 122 78.7
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.4e-49 198.0 126 77.8
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 7.5e-49 197.2 149 67.1
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 7.5e-49 197.2 126 74.6
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 7.5e-49 197.2 126 74.6
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.7e-48 196.1 122 77.9
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 3.7e-48 194.9 121 76.0
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.1e-47 193.4 123 70.7
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.4e-47 193.0 123 71.5
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.9e-47 192.6 125 72.0
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 3.2e-47 191.8 125 70.4
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 4.1e-47 191.4 120 75.8
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.0e-47 190.7 123 74.8
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.0e-46 189.1 123 73.2
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.3e-45 185.7 126 71.4
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 2.3e-45 185.7 123 72.4
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.3e-45 185.7 123 71.5
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 3.0e-45 185.3 166 59.6
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 3.9e-45 184.9 122 72.1
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 5.0e-45 184.5 123 71.5
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 5.0e-45 184.5 123 71.5
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 6.6e-45 184.1 123 71.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 8.6e-45 183.7 125 72.0
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 1.1e-44 183.3 123 70.7
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.1e-42 176.8 123 69.1
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 4.0e-42 174.9 123 71.5
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.6e-41 172.2 115 73.9
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 7.5e-41 170.6 123 68.3
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.3e-40 169.9 125 70.4
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 7.1e-39 164.1 125 66.4
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 2.7e-38 162.2 120 65.8
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 4.6e-38 161.4 121 62.8
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.1e-35 152.5 123 64.2
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.8e-34 149.4 93 77.4
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 2.0e-33 146.0 91 73.6
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.1e-31 140.2 124 58.9
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 9.2e-31 137.1 89 73.0
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.9e-28 129.4 78 76.9
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 9.6e-28 127.1 134 47.8
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 1.4e-23 113.2 106 50.9
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 9.3e-23 110.5 63 82.5
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 7.8e-22 107.5 75 70.7
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 2.3e-21 105.9 68 73.5
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 1.5e-20 103.2 98 59.2
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.6e-19 99.8 60 76.7
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 7.6e-17 90.9 50 86.0
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 3.8e-16 88.6 59 74.6
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 6.4e-16 87.8 46 82.6
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 8.4e-16 87.4 58 69.0
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.0e-13 80.5 109 42.2
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.5e-12 76.6 125 37.6
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.3e-12 75.5 95 43.2
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.3e-11 73.6 95 41.1
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 8.1e-11 70.9 116 41.4
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 9.0e-10 67.4 88 40.9
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 4.9e-08 61.6 33 87.9
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 8.4e-08 60.8 33 84.8
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.2e-07 58.5 117 34.2
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 7.1e-07 57.8 96 34.4
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 7.1e-07 57.8 124 33.1


User provided reference genes

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