Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01360 Eucalyptus grandis HOM05D003097 ORTHO05D003437 3.4e-86 321.6 164 100.0
Eucgr.A02944 Eucalyptus grandis HOM05D003097 ORTHO05D003437 2.3e-82 308.9 164 97.0
Eucgr.L03636 Eucalyptus grandis HOM05D003097 ORTHO05D003437 9.4e-68 260.4 144 93.8
Eucgr.E03686 Eucalyptus grandis HOM05D003097 ORTHO05D003437 6.1e-67 257.7 144 93.8
Eucgr.E02120 Eucalyptus grandis HOM05D003097 ORTHO05D003437 1.4e-66 256.5 144 93.1
Eucgr.L03550 Eucalyptus grandis HOM05D003097 ORTHO05D003437 2.0e-57 226.1 128 93.8
Eucgr.C02076 Eucalyptus grandis HOM05D003097 ORTHO05D003437 9.1e-55 217.2 144 83.3
Eucgr.F04044 Eucalyptus grandis HOM05D003097 ORTHO05D003437 4.9e-32 141.7 80 93.8
Eucgr.I02346 Eucalyptus grandis HOM05D003097 ORTHO05D003437 1.9e-28 129.8 82 87.8
Atru.chr3.803 Acer truncatum HOM05D003097 ORTHO05D003437 1.4e-18 97.1 82 63.4
Manes.01G145900 Manihot esculenta HOM05D003097 ORTHO05D003437 1.8e-18 96.7 80 63.8
GSVIVG01018777001 Vitis vinifera HOM05D003097 ORTHO05D003437 3.1e-18 95.9 80 67.5
PGR119G0495 Punica granatum HOM05D003097 ORTHO05D003437 6.8e-18 94.7 99 54.5
QL06p032886 Quercus lobata HOM05D003097 ORTHO05D003437 6.8e-18 94.7 80 66.2
MD02G1132000 Malus domestica HOM05D003097 ORTHO05D003437 8.9e-18 94.4 81 64.2
Dinv40090 Davidia involucrata HOM05D003097 ORTHO05D003437 2.6e-17 92.8 80 61.2
TWI53G0815 Tripterygium wilfordii HOM05D003097 ORTHO05D003437 4.4e-17 92.0 81 60.5
Sed0015691 Sechium edule HOM05D003097 ORTHO05D003437 9.9e-17 90.9 80 62.5
FvH4_1g11770 Fragaria vesca HOM05D003097 ORTHO05D003437 1.7e-16 90.1 83 61.4
FAN23G2650 Fragaria x ananassa HOM05D003097 ORTHO05D003437 2.9e-16 89.4 83 61.4
FAN28G2069 Fragaria x ananassa HOM05D003097 ORTHO05D003437 3.8e-16 89.0 83 60.2
CiPaw.07G058800 Carya illinoinensis HOM05D003097 ORTHO05D003437 4.9e-16 88.6 85 56.5
ClCG01G020320 Citrullus lanatus HOM05D003097 ORTHO05D003437 6.4e-16 88.2 80 61.2
FAN19G0902 Fragaria x ananassa HOM05D003097 ORTHO05D003437 1.9e-15 86.7 83 60.2
Nn5g29092 Nelumbo nucifera HOM05D003097 ORTHO05D003437 1.9e-15 86.7 89 55.1
CiPaw.08G131400 Carya illinoinensis HOM05D003097 ORTHO05D003437 2.4e-15 86.3 82 59.8
CsaV3_6G047120 Cucumis sativus L. HOM05D003097 ORTHO05D003437 2.4e-15 86.3 79 60.8
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 3.2e-15 85.9 86 55.8
MELO3C007905.2 Cucumis melo HOM05D003097 ORTHO05D003437 3.2e-15 85.9 80 58.8
FAN26G3019 Fragaria x ananassa HOM05D003097 ORTHO05D003437 3.2e-15 85.9 83 59.0
Dinv33630 Davidia involucrata HOM05D003097 ORTHO05D003437 1.2e-14 84.0 81 54.3
Cfa006975 Carpinus fangiana HOM05D003097 ORTHO05D003437 2.1e-14 83.2 87 55.2
RcHm_v2.0_Chr2g0099391 Rosa chinensis HOM05D003097 ORTHO05D003437 2.7e-14 82.8 83 57.8
Thecc.01G018200 Theobroma cacao HOM05D003097 ORTHO05D003437 6.0e-14 81.6 75 57.3
Potri.005G113400 Populus trichocarpa HOM05D003097 ORTHO05D003437 1.0e-13 80.9 77 58.4
Prupe.7G168500 Prunus persica HOM05D003097 ORTHO05D003437 1.0e-13 80.9 78 59.0
Sc03g0003590 Simmondsia chinensis HOM05D003097 ORTHO05D003437 1.9e-12 76.6 78 55.1
Duzib187G0417 Durio zibethinus HOM05D003097 ORTHO05D003437 2.5e-12 76.3 80 52.5
Actinidia17442 Actinidia chinensis HOM05D003097 ORTHO05D003437 9.6e-12 74.3 81 53.1
Medtr4g075480 Medicago truncatula HOM05D003097 ORTHO05D003437 9.6e-12 74.3 85 56.5
Rhsim10G0211800 Rhododendron simsii HOM05D003097 ORTHO05D003437 2.1e-11 73.2 81 53.1
Sed0000450 Sechium edule HOM05D003097 ORTHO05D003437 2.8e-11 72.8 82 56.1
Ca_19000_v3 Cicer arietinum L. HOM05D003097 ORTHO05D003437 4.7e-11 72.0 85 55.3
Actinidia22974 Actinidia chinensis HOM05D003097 ORTHO05D003437 6.2e-11 71.6 82 48.8
Hma1.2p1_1385F.1_g279750 Hydrangea macrophylla HOM05D003097 ORTHO05D003437 8.1e-11 71.2 86 50.0
CANSAT01G2970 Cannabis sativa HOM05D003097 ORTHO05D003437 1.1e-10 70.9 71 57.7
TPR.G17152 Trifolium pratense HOM05D003097 ORTHO05D003437 1.4e-10 70.5 85 54.1
TAR376G0456 Trochodendron aralioides HOM05D003097 ORTHO05D003437 3.1e-10 69.3 84 50.0
TAR628G1174 Trochodendron aralioides HOM05D003097 ORTHO05D003437 3.1e-10 69.3 78 50.0
vmacro22134 Vaccinium macrocarpon HOM05D003097 ORTHO05D003437 3.1e-10 69.3 81 49.4
Ca_12533_v3 Cicer arietinum L. HOM05D000822 ORTHO05D002021 4.0e-10 68.9 74 54.1
Gohir.A02G170900 Gossypium hirsutum HOM05D003097 ORTHO05D003437 5.2e-10 68.6 76 48.7
PSO541G5166 Papaver somniferum HOM05D003097 ORTHO05D003437 6.9e-10 68.2 87 47.1
PSO675G5479 Papaver somniferum HOM05D003097 ORTHO05D003437 9.0e-10 67.8 85 48.2
CSS0021352 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 1.2e-09 67.4 81 49.4
Lalb_Chr19g0139511 Lupinus albus HOM05D003097 ORTHO05D003437 1.2e-09 67.4 85 51.8
Psat6g051600 Pisum sativum HOM05D003097 ORTHO05D003437 1.5e-09 67.0 74 52.7
Glyma.07G171600 Glycine max HOM05D003097 ORTHO05D003437 2.6e-09 66.2 76 52.6
Gorai.003G009400 Gossypium raimondii HOM05D003097 ORTHO05D003437 3.4e-09 65.9 91 42.9
Psat7g178360 Pisum sativum HOM05D003097 ORTHO05D003437 9.9e-09 64.3 86 53.5
Hund14046 Selenicereus undatus HOM05D003097 ORTHO05D003437 9.9e-09 64.3 80 50.0
VMungo1127G0811 Vigna mungo HOM05D003097 ORTHO05D003437 9.9e-09 64.3 85 50.6
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 1.3e-08 63.9 86 48.8
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 1.7e-08 63.5 88 50.0
Thecc.02G067000 Theobroma cacao HOM05D003097 ORTHO05D003437 1.7e-08 63.5 88 48.9
VMungo1215G2525 Vigna mungo HOM05D003097 ORTHO05D003437 1.7e-08 63.5 92 48.9
COL.COLO4_21904 Corchorus olitorius HOM05D003097 ORTHO05D003437 2.2e-08 63.2 79 46.8
Gohir.D11G182600 Gossypium hirsutum HOM05D003097 ORTHO05D003437 2.2e-08 63.2 95 40.0
Hma1.2p1_0956F.1_g241270 Hydrangea macrophylla HOM05D003097 ORTHO05D003437 2.2e-08 63.2 82 46.3
Medtr1g032600 Medicago truncatula HOM05D003097 ORTHO05D003437 2.2e-08 63.2 75 53.3
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 2.9e-08 62.8 83 45.8
Phvul.011G178100 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 3.8e-08 62.4 83 50.6
Phvul.003G016700 Phaseolus vulgaris HOM05D003097 ORTHO05D003437 4.9e-08 62.0 92 48.9
Actinidia31235 Actinidia chinensis HOM05D003097 ORTHO05D003437 8.4e-08 61.2 84 45.2
Gohir.A03G203100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 8.4e-08 61.2 88 47.7
Gohir.D02G224400 Gossypium hirsutum HOM05D003097 ORTHO05D003437 8.4e-08 61.2 88 47.7
Atru.chr5.3226 Acer truncatum HOM05D003097 ORTHO05D003437 1.1e-07 60.8 90 44.4
Actinidia32084 Actinidia chinensis HOM05D003097 ORTHO05D003437 1.1e-07 60.8 81 46.9
SalBow3G2226 Salvia bowleyana HOM05D003097 ORTHO05D003437 1.1e-07 60.8 89 43.8
Cpa.g.sc17.155 Carica papaya HOM05D003097 ORTHO05D003437 1.4e-07 60.5 87 49.4
Gohir.D03G009200 Gossypium hirsutum HOM05D003097 ORTHO05D003437 1.4e-07 60.5 91 39.6
Gorai.007G194400 Gossypium raimondii HOM05D003097 ORTHO05D003437 1.4e-07 60.5 75 44.0
Lj2A468T74 Lonicera japonica HOM05D003097 ORTHO05D003437 1.4e-07 60.5 80 47.5
vmacro17382 Vaccinium macrocarpon HOM05D003097 ORTHO05D003437 1.4e-07 60.5 85 45.9
AUR62029468 Chenopodium quinoa HOM05D003097 ORTHO05D003437 1.9e-07 60.1 80 48.8
Cc02_g16520 Coffea canephora HOM05D003097 ORTHO05D003437 1.9e-07 60.1 89 42.7
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 1.9e-07 60.1 86 47.7
MBI09_g12954_MAGBIO Magnolia biondii HOM05D003097 ORTHO05D003437 2.4e-07 59.7 87 48.3
PGSC0003DMG400001594 Solanum tuberosum HOM05D003097 ORTHO05D003437 2.4e-07 59.7 85 47.1
TPR.G35316 Trifolium pratense HOM05D003097 ORTHO05D003437 2.4e-07 59.7 75 50.7
arahy.Tifrunner.gnm1.ann1.4V5YZV Arachis hypogaea HOM05D003097 ORTHO05D003437 4.2e-07 58.9 82 43.9
arahy.Tifrunner.gnm1.ann1.SH99DR Arachis hypogaea HOM05D003097 ORTHO05D003437 4.2e-07 58.9 82 43.9
Lalb_Chr03g0024691 Lupinus albus HOM05D003097 ORTHO05D003437 4.2e-07 58.9 85 48.2
Nitab4.5_0000283g0080 Nicotiana tabacum HOM05D003097 ORTHO05D003437 4.2e-07 58.9 85 45.9
Solyc01g111130.4 Solanum lycopersicum HOM05D003097 ORTHO05D003437 4.2e-07 58.9 84 47.6
Ah.03g148800 Amaranthus hybridus HOM05D003097 ORTHO05D003437 5.4e-07 58.5 78 48.7
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 5.4e-07 58.5 75 44.0
Lj3g0016767 Lotus japonicus HOM05D003097 ORTHO05D003437 5.4e-07 58.5 85 48.2
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 7.1e-07 58.2 88 45.5
Oeu002954.1 Olea europaea HOM05D003097 ORTHO05D003437 7.1e-07 58.2 88 44.3
Prupe.8G160700 Prunus persica HOM05D003097 ORTHO05D003437 7.1e-07 58.2 86 44.2
Ciclev10028783m.g Citrus clementina HOM05D003097 ORTHO05D003437 9.3e-07 57.8 88 46.6
Sabra04G0112700 Salix brachista HOM05D003097 ORTHO05D003437 1.6e-06 57.0 89 43.8
Potri.004G168100 Populus trichocarpa HOM05D003097 ORTHO05D003437 2.1e-06 56.6 85 44.7
Aqoxy6G02341 Aquilegia oxysepala HOM05D003097 ORTHO05D003437 2.7e-06 56.2 72 48.6
CAN.G588.25 Capsicum annuum HOM05D003097 ORTHO05D003437 2.7e-06 56.2 85 44.7
COL.COLO4_17256 Corchorus olitorius HOM05D003097 ORTHO05D003437 2.7e-06 56.2 88 44.3
Nitab4.5_0000980g0160 Nicotiana tabacum HOM05D003097 ORTHO05D003437 3.5e-06 55.8 85 44.7
DCAR_022957 Daucus carota HOM05D003097 ORTHO05D003437 4.6e-06 55.5 82 45.1
Manes.05G200500 Manihot esculenta HOM05D003097 ORTHO05D003437 4.6e-06 55.5 89 42.7
Oeu012558.1 Olea europaea HOM05D003097 ORTHO05D003437 4.6e-06 55.5 69 46.4
Sopen01g053190 Solanum pennellii HOM05D003097 ORTHO05D003437 4.6e-06 55.5 84 45.2
FvH4_2g02000 Fragaria vesca HOM05D003097 ORTHO05D003437 6.0e-06 55.1 84 47.6


User provided reference genes

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