Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01308 Eucalyptus grandis HOM05D001003 ORTHO05D007825 1.1e-38 162.9 85 100.0
Eucgr.A01002 Eucalyptus grandis HOM05D001003 ORTHO05D007825 4.0e-22 107.8 63 87.3
Gohir.D12G123300 Gossypium hirsutum HOM05D001003 ORTHO05D007825 7.1e-19 97.1 69 73.9
Gohir.A12G119700 Gossypium hirsutum HOM05D001003 ORTHO05D007825 2.7e-18 95.1 69 72.5
Gorai.008G134400 Gossypium raimondii HOM05D001003 ORTHO05D007825 3.5e-18 94.7 69 72.5
Gohir.A12G119601 Gossypium hirsutum HOM05D001003 ORTHO05D007825 1.0e-17 93.2 69 71.0
Duzib138G1827 Durio zibethinus HOM05D001003 ORTHO05D007825 2.3e-17 92.0 63 77.8
Sed0000323 Sechium edule HOM05D001003 ORTHO05D007825 3.0e-17 91.7 62 75.8
Gohir.D12G123200 Gossypium hirsutum HOM05D001003 ORTHO05D007825 3.9e-17 91.3 69 69.6
Thecc.01G325600 Theobroma cacao HOM05D001003 ORTHO05D007825 5.1e-17 90.9 69 72.5
COL.COLO4_23126 Corchorus olitorius HOM05D001003 ORTHO05D007825 1.1e-16 89.7 69 69.6
QL12p034974 Quercus lobata HOM05D001003 ORTHO05D007825 1.5e-16 89.4 62 74.2
Cfa004915 Carpinus fangiana HOM05D001003 ORTHO05D007825 3.3e-16 88.2 62 72.6
Haze_05151 Corylus avellana HOM05D001003 ORTHO05D007825 3.3e-16 88.2 62 72.6
PGR042G2921 Punica granatum HOM05D001003 ORTHO05D007825 4.3e-16 87.8 65 76.9
Cpa.g.sc57.19 Carica papaya HOM05D001003 ORTHO05D007825 5.7e-16 87.4 69 68.1
TWI23G0884 Tripterygium wilfordii HOM05D001003 ORTHO05D007825 9.7e-16 86.7 63 69.8
Manes.01G235300 Manihot esculenta HOM05D001003 ORTHO05D007825 2.2e-15 85.5 62 69.4
Sabra14G0082300 Salix brachista HOM05D001003 ORTHO05D007825 2.2e-15 85.5 62 71.0
TPR.G3082 Trifolium pratense HOM05D001003 ORTHO05D007825 2.2e-15 85.5 69 62.3
TWI59G0358 Tripterygium wilfordii HOM05D001003 ORTHO05D007825 2.2e-15 85.5 63 68.3
Potri.002G186800 Populus trichocarpa HOM05D001003 ORTHO05D007825 2.8e-15 85.1 62 72.6
MELO3C011811.2 Cucumis melo HOM05D001003 ORTHO05D007825 3.7e-15 84.7 62 69.4
Potri.014G112000 Populus trichocarpa HOM05D001003 ORTHO05D007825 3.7e-15 84.7 62 71.0
Lj5g0012064 Lotus japonicus HOM05D001003 ORTHO05D007825 4.8e-15 84.3 62 67.7
Medtr1g085980 Medicago truncatula HOM05D001003 ORTHO05D007825 4.8e-15 84.3 62 67.7
Rhsim01G0000600 Rhododendron simsii HOM05D001003 ORTHO05D007825 4.8e-15 84.3 65 69.2
CSS0010381 Camellia sinensis var. sinensis HOM05D001003 ORTHO05D007825 6.3e-15 84.0 65 67.7
TAR633G1580 Trochodendron aralioides HOM05D001003 ORTHO05D007825 8.2e-15 83.6 62 67.7
FAN28G0583 Fragaria x ananassa HOM05D001003 ORTHO05D007825 1.4e-14 82.8 67 67.2
Sabra02G0129500 Salix brachista HOM05D001003 ORTHO05D007825 1.4e-14 82.8 62 69.4
GSVIVG01028245001 Vitis vinifera HOM05D001003 ORTHO05D007825 1.4e-14 82.8 62 66.1
vmacro02356 Vaccinium macrocarpon HOM05D001003 ORTHO05D007825 1.8e-14 82.4 70 62.9
Atru.BG.64.p Acer truncatum HOM05D001003 ORTHO05D007825 2.4e-14 82.0 61 68.9
Atru.chr5.857 Acer truncatum HOM05D001003 ORTHO05D007825 2.4e-14 82.0 61 68.9
CsaV3_5G029680 Cucumis sativus L. HOM05D001003 ORTHO05D007825 2.4e-14 82.0 62 66.1
Prupe.3G002400 Prunus persica HOM05D001003 ORTHO05D007825 2.4e-14 82.0 61 70.5
Ciclev10019818m.g Citrus clementina HOM05D001003 ORTHO05D007825 5.3e-14 80.9 62 66.1
Ca_10239_v3 Cicer arietinum L. HOM05D001003 ORTHO05D007825 9.0e-14 80.1 62 64.5
FvH4_1g26210 Fragaria vesca HOM05D001003 ORTHO05D007825 9.0e-14 80.1 60 66.7
Lalb_Chr21g0309841 Lupinus albus HOM05D001003 ORTHO05D007825 9.0e-14 80.1 62 67.7
FAN26G2667 Fragaria x ananassa HOM05D001003 ORTHO05D007825 1.2e-13 79.7 60 66.7
CiPaw.07G125800 Carya illinoinensis HOM05D001003 ORTHO05D007825 1.5e-13 79.3 61 68.9
Psat6g158800 Pisum sativum HOM05D001003 ORTHO05D007825 1.5e-13 79.3 69 58.0
CANSAT25G3507 Cannabis sativa HOM05D001003 ORTHO05D007825 2.0e-13 79.0 66 63.6
VMungo0720G0254 Vigna mungo HOM05D001003 ORTHO05D007825 2.6e-13 78.6 61 67.2
MD17G1285300 Malus domestica HOM05D001003 ORTHO05D007825 3.4e-13 78.2 62 62.9
PSO357G0515 Papaver somniferum HOM05D001003 ORTHO05D007825 3.4e-13 78.2 62 61.3
FAN19G3028 Fragaria x ananassa HOM05D001003 ORTHO05D007825 4.5e-13 77.8 60 65.0
FAN23G0120 Fragaria x ananassa HOM05D001003 ORTHO05D007825 5.9e-13 77.4 60 65.0
RcHm_v2.0_Chr3g0485751 Rosa chinensis HOM05D001003 ORTHO05D007825 5.9e-13 77.4 58 67.2
arahy.Tifrunner.gnm1.ann1.09736N Arachis hypogaea HOM05D001003 ORTHO05D007825 7.7e-13 77.0 62 64.5
arahy.Tifrunner.gnm1.ann1.FXN302 Arachis hypogaea HOM05D001003 ORTHO05D007825 7.7e-13 77.0 62 64.5
Hma1.2p1_0408F.1_g146280 Hydrangea macrophylla HOM05D001003 ORTHO05D007825 7.7e-13 77.0 60 66.7
CAN.G179.32 Capsicum annuum HOM05D001003 ORTHO05D007825 1.3e-12 76.3 64 57.8
Phvul.007G209100 Phaseolus vulgaris HOM05D001003 ORTHO05D007825 1.3e-12 76.3 61 65.6
Cc01_g21770 Coffea canephora HOM05D001003 ORTHO05D007825 1.7e-12 75.9 62 64.5
HanXRQChr15g0464501 Helianthus annuus HOM05D001003 ORTHO05D007825 2.2e-12 75.5 65 60.0
Aqoxy5G02823 Aquilegia oxysepala HOM05D001003 ORTHO05D007825 2.9e-12 75.1 69 58.0
Lsat_1_v5_gn_9_7000 Lactuca sativa HOM05D001003 ORTHO05D007825 2.9e-12 75.1 64 57.8
Nitab4.5_0003092g0040 Nicotiana tabacum HOM05D001003 ORTHO05D007825 2.9e-12 75.1 64 57.8
Peaxi162Scf00309g00810 Petunia axillaris HOM05D001003 ORTHO05D007825 2.9e-12 75.1 65 56.9
Nn4g25340 Nelumbo nucifera HOM05D001003 ORTHO05D007825 3.8e-12 74.7 61 63.9
Nitab4.5_0000222g0390 Nicotiana tabacum HOM05D001003 ORTHO05D007825 3.8e-12 74.7 64 57.8
THA.LOC104801324 Tarenaya hassleriana HOM05D001003 ORTHO05D007825 3.8e-12 74.7 69 56.5
Glyma.10G138200 Glycine max HOM05D001003 ORTHO05D007825 5.0e-12 74.3 61 63.9
Sp6g01620 Schrenkiella parvula HOM05D001003 ORTHO05D007825 5.0e-12 74.3 67 61.2
Solyc01g079100.3 Solanum lycopersicum HOM05D001003 ORTHO05D007825 8.5e-12 73.6 64 56.2
Sopen01g030610 Solanum pennellii HOM05D001003 ORTHO05D007825 8.5e-12 73.6 64 56.2
PGSC0003DMG400001118 Solanum tuberosum HOM05D001003 ORTHO05D007825 8.5e-12 73.6 64 56.2
BcaB05g23602 Brassica carinata HOM05D001003 ORTHO05D007825 1.4e-11 72.8 67 59.7
Thhalv10028590m.g Eutrema salsugineum HOM05D001003 ORTHO05D007825 2.5e-11 72.0 67 59.7
Lj2A1216T57 Lonicera japonica HOM05D001003 ORTHO05D007825 2.5e-11 72.0 66 54.5
MBI18_g10372_MAGBIO Magnolia biondii HOM05D001003 ORTHO05D007825 3.2e-11 71.6 65 61.5
Actinidia21337 Actinidia chinensis HOM05D001003 ORTHO05D007825 4.2e-11 71.2 65 56.9
AL6G51610 Arabidopsis lyrata HOM05D001003 ORTHO05D007825 1.2e-10 69.7 67 53.7
CDE01G0170 Ceratophyllum demersum HOM05D001003 ORTHO05D007825 1.2e-10 69.7 62 58.1
CARHR249950 Cardamine hirsuta HOM05D001003 ORTHO05D007825 1.6e-10 69.3 62 58.1
BcaC03g16102 Brassica carinata HOM05D001003 ORTHO05D007825 2.1e-10 68.9 67 56.7
C02p38720 Brassica napus HOM05D001003 ORTHO05D007825 2.1e-10 68.9 67 56.7
BolC2t09889H Brassica oleracea HOM05D001003 ORTHO05D007825 2.1e-10 68.9 67 56.7
Aa31LG5G1430 Aethionema arabicum HOM05D001003 ORTHO05D007825 2.7e-10 68.6 67 56.7
A02p24500 Brassica napus HOM05D001003 ORTHO05D007825 2.7e-10 68.6 67 56.7
BraA02t07440Z Brassica rapa HOM05D001003 ORTHO05D007825 2.7e-10 68.6 67 56.7
Carub.0006s3548 Capsella rubella HOM05D001003 ORTHO05D007825 6.1e-10 67.4 67 53.7
HanXRQChr10g0286471 Helianthus annuus HOM05D001003 ORTHO05D007825 7.9e-10 67.0 66 50.0
ECA247G3135 Erigeron canadensis HOM05D001003 ORTHO05D007825 1.8e-09 65.9 60 56.7
ATR0796G154 Amborella trichopoda HOM05D001003 ORTHO05D007825 2.3e-09 65.5 62 54.8
AT4G01730 Arabidopsis thaliana HOM05D001003 ORTHO05D007825 2.3e-09 65.5 67 53.7
Oeu052588.2 Olea europaea HOM05D001003 ORTHO05D007825 1.9e-08 62.4 64 54.7
Hund11622 Selenicereus undatus HOM05D001003 ORTHO05D007825 4.3e-08 61.2 60 55.0
SGA_v2.0_scaffold417G51249 Striga asiatica HOM05D001003 ORTHO05D007825 4.3e-08 61.2 62 50.0
MSTRG.18060 Avicennia marina HOM05D001003 ORTHO05D007825 7.4e-08 60.5 72 48.6
Migut.D00011 Erythranthe guttata HOM05D001003 ORTHO05D007825 2.2e-07 58.9 57 52.6
AUR62011766 Chenopodium quinoa HOM05D001003 ORTHO05D007825 6.3e-07 57.4 64 50.0


User provided reference genes

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