Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 3.7e-123 444.9 224 100.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 2.8e-107 392.1 221 87.3
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 3.7e-107 391.7 223 87.9
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 8.2e-107 390.6 222 87.4
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 9.1e-106 387.1 221 86.4
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.7e-105 385.6 222 86.5
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 4.5e-105 384.8 221 86.4
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.3e-104 383.3 222 86.5
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 1.3e-104 383.3 222 86.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 2.2e-104 382.5 222 86.0
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.5e-103 379.8 223 83.4
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 2.7e-102 375.6 224 84.8
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 6.1e-102 374.4 224 84.4
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.0e-101 373.6 215 86.0
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.8e-101 372.9 224 83.9
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.8e-101 372.9 215 86.5
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 3.0e-101 372.1 222 82.9
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.2e-100 370.2 218 84.4
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.0e-100 369.4 222 84.2
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 3.4e-100 368.6 220 83.2
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.4e-100 368.2 257 75.1
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 7.5e-100 367.5 219 82.2
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 7.5e-100 367.5 213 82.6
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 9.8e-100 367.1 217 82.5
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.3e-99 366.7 220 81.8
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 2.2e-99 365.9 213 82.2
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.8e-99 365.5 217 83.4
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 2.8e-99 365.5 214 85.0
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 3.7e-99 365.2 215 84.2
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 6.3e-99 364.4 223 78.9
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.8e-98 362.8 213 81.7
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.4e-98 362.5 210 82.4
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 4.1e-98 361.7 216 83.3
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 9.1e-98 360.5 220 80.5
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 9.1e-98 360.5 217 81.1
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 9.1e-98 360.5 219 81.7
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.2e-97 360.1 219 81.7
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.2e-97 360.1 219 81.7
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 2.0e-97 359.4 215 82.8
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 2.0e-97 359.4 219 79.9
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 2.7e-97 359.0 223 80.3
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.5e-97 358.6 216 81.0
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 3.5e-97 358.6 224 77.7
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 4.5e-97 358.2 217 79.7
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 5.9e-97 357.8 214 84.1
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 7.7e-97 357.5 215 81.9
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.0e-96 357.1 217 79.3
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 1.0e-96 357.1 215 81.9
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 1.0e-96 357.1 215 80.5
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 1.3e-96 356.7 224 78.1
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.3e-96 356.7 212 81.6
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.7e-96 356.3 223 78.9
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.2e-96 355.9 221 77.4
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 3.8e-96 355.1 217 82.0
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.8e-96 355.1 223 77.6
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 3.8e-96 355.1 212 81.1
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 5.0e-96 354.8 224 76.8
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 6.5e-96 354.4 217 78.8
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 6.5e-96 354.4 224 77.2
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 6.5e-96 354.4 213 80.3
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 8.5e-96 354.0 221 77.8
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.5e-95 353.2 217 80.6
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.5e-95 353.2 221 77.8
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 1.9e-95 352.8 224 76.8
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.9e-95 352.8 227 77.1
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.2e-95 352.1 224 76.3
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 3.2e-95 352.1 217 80.2
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 4.2e-95 351.7 224 76.3
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 4.2e-95 351.7 217 80.2
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 7.2e-95 350.9 224 76.3
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 7.2e-95 350.9 214 79.4
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 9.4e-95 350.5 224 76.3
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 9.4e-95 350.5 224 76.3
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 9.4e-95 350.5 224 76.8
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 9.4e-95 350.5 221 76.5
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.2e-94 350.1 221 76.9
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 6.1e-94 347.8 224 76.8
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.0e-93 347.1 224 75.4
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 8.8e-93 344.0 218 77.5
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 2.2e-91 339.3 219 75.8
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 3.7e-91 338.6 213 77.0
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 8.3e-91 337.4 216 78.2
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 1.8e-90 336.3 258 67.4
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 2.4e-90 335.9 186 88.7
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.1e-90 335.5 221 73.8
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.0e-90 334.3 221 73.3
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.6e-89 333.2 224 72.8
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 4.5e-89 331.6 272 64.0
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 7.7e-89 330.9 221 72.4
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.0e-88 330.5 223 73.1
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.0e-88 330.5 221 72.4
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.0e-88 330.5 221 72.4
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 2.3e-88 329.3 221 71.9
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 2.3e-88 329.3 221 71.9
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 2.9e-88 328.9 221 71.9
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 3.8e-88 328.6 212 76.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 8.6e-88 327.4 218 77.5
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 1.1e-87 327.0 223 72.2
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.5e-87 326.6 223 72.2
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 2.5e-87 325.9 210 73.8
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 4.3e-87 325.1 224 71.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 4.3e-87 325.1 224 71.9
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 6.1e-86 321.2 220 74.1
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 6.1e-86 321.2 221 73.8
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 3.0e-85 318.9 217 73.7
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.2e-81 307.0 221 67.9
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 5.9e-81 304.7 216 67.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.3e-80 303.5 216 66.7
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.3e-80 303.5 218 67.0
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.9e-79 299.7 217 69.6
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.6e-78 295.4 214 67.3
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 4.7e-78 295.0 220 65.9
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 6.2e-78 294.7 177 79.7
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.0e-77 293.9 219 64.4
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 8.6e-72 274.2 182 71.4
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.4e-66 256.1 216 60.2
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.6e-65 251.9 126 99.2
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 8.9e-61 237.7 141 82.3
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 6.4e-59 231.5 231 51.5
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 3.9e-56 222.2 145 75.2
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 6.2e-54 214.9 131 82.4
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 8.9e-53 211.1 122 82.0
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 2.6e-52 209.5 125 82.4
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 6.2e-46 188.3 152 66.4
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.1e-42 174.9 115 74.8
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 2.5e-39 166.4 124 66.1
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 4.3e-39 165.6 129 65.9
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.1e-37 159.5 108 72.2
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.9e-35 152.1 93 78.5
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.4e-35 151.8 92 83.7
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 5.5e-34 148.7 89 85.4
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 7.1e-34 148.3 91 74.7
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 5.6e-31 138.7 165 43.6
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 1.6e-30 137.1 213 40.4
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 5.8e-28 128.6 195 37.9
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.0e-27 127.9 78 75.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.2e-27 126.7 189 37.0
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 2.2e-27 126.7 189 37.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 4.9e-27 125.6 219 35.2
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 1.1e-26 124.4 202 40.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 7.9e-25 118.2 94 64.9
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 3.0e-24 116.3 209 36.4
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.6e-22 110.5 63 82.5
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 8.2e-22 108.2 68 75.0
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 8.2e-22 108.2 75 70.7
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.2e-20 104.4 226 32.3
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 1.5e-20 104.0 216 32.9
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 2.0e-20 103.6 98 59.2
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 4.5e-20 102.4 66 75.8
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.3e-19 100.9 88 60.2
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.9e-19 99.8 60 76.7
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.5e-18 96.7 170 32.4
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.3e-16 90.9 63 74.6
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 3.9e-16 89.4 59 74.6
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.1e-15 87.8 46 82.6
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 1.5e-15 87.4 51 78.4
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 1.3e-14 84.3 59 71.2
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 3.7e-14 82.8 70 60.0
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 1.4e-13 80.9 68 58.8
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 4.2e-10 69.3 72 51.4
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 5.5e-10 68.9 92 50.0
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 4.6e-09 65.9 92 45.7
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 6.1e-09 65.5 63 52.4
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 6.1e-09 65.5 68 50.0
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 6.1e-09 65.5 63 52.4
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 3.0e-08 63.2 58 55.2
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 6.7e-08 62.0 39 74.4
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 8.8e-08 61.6 56 55.4


User provided reference genes

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