Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 9.9e-71 270.0 136 100.0
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.9e-62 241.1 136 91.9
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.0e-40 168.3 98 88.8
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 9.3e-29 130.6 68 98.5
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 7.4e-26 120.9 115 61.7
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 4.8e-25 118.2 118 57.6
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 6.3e-25 117.9 77 76.6
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 1.1e-24 117.1 68 85.3
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 1.4e-24 116.7 71 77.5
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 1.4e-24 116.7 71 78.9
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 1.4e-24 116.7 77 76.6
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 1.8e-24 116.3 68 88.2
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 3.1e-24 115.5 68 86.8
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 4.1e-24 115.2 68 83.8
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 1.2e-23 113.6 101 64.4
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 1.5e-23 113.2 68 82.4
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 3.4e-23 112.1 68 80.9
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 5.9e-23 111.3 68 80.9
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 5.9e-23 111.3 68 80.9
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 5.9e-23 111.3 68 80.9
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.0e-22 110.5 68 77.9
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 1.7e-22 109.8 59 94.9
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 2.2e-22 109.4 71 77.5
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 2.9e-22 109.0 68 82.4
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 2.9e-22 109.0 91 68.1
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 2.9e-22 109.0 68 76.5
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 3.8e-22 108.6 68 82.4
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 6.5e-22 107.8 68 85.3
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 6.5e-22 107.8 67 76.1
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 6.5e-22 107.8 69 75.4
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 2.5e-21 105.9 69 78.3
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 5.5e-21 104.8 68 77.9
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 5.5e-21 104.8 70 75.7
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 7.2e-21 104.4 66 78.8
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 1.2e-20 103.6 70 75.7
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 2.7e-20 102.4 67 80.6
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 6.1e-20 101.3 66 80.3
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 6.1e-20 101.3 68 73.5
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 6.1e-20 101.3 68 75.0
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 6.1e-20 101.3 70 74.3
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 6.1e-20 101.3 68 76.5
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 1.4e-19 100.1 67 79.1
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 2.3e-19 99.4 121 57.0
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 3.0e-19 99.0 67 74.6
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 3.9e-19 98.6 68 77.9
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 6.7e-19 97.8 83 60.2
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 6.7e-19 97.8 70 72.9
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 6.7e-19 97.8 70 72.9
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 6.7e-19 97.8 70 72.9
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 8.8e-19 97.4 68 72.1
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 8.8e-19 97.4 70 71.4
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 1.1e-18 97.1 68 76.5
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 1.1e-18 97.1 68 76.5
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 1.1e-18 97.1 70 72.9
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 1.1e-18 97.1 68 76.5
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.1e-18 97.1 70 72.9
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 1.5e-18 96.7 68 73.5
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 1.5e-18 96.7 65 76.9
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 1.5e-18 96.7 71 70.4
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.9e-18 96.3 70 71.4
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 2.5e-18 95.9 86 65.1
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 3.3e-18 95.5 68 75.0
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 4.3e-18 95.1 68 75.0
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 4.3e-18 95.1 65 78.5
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 5.7e-18 94.7 65 75.4
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 9.7e-18 94.0 67 76.1
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.7e-17 93.2 62 72.6
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 3.7e-17 92.0 68 72.1
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 3.7e-17 92.0 68 72.1
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 3.7e-17 92.0 68 72.1
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 3.7e-17 92.0 68 72.1
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 4.8e-17 91.7 62 72.6
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 6.3e-17 91.3 68 67.6
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 8.2e-17 90.9 67 68.7
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 8.2e-17 90.9 56 78.6
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 1.1e-16 90.5 67 70.1
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.1e-16 90.5 71 64.8
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 3.1e-16 89.0 81 60.5
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 3.1e-16 89.0 70 64.3
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 3.1e-16 89.0 70 64.3
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 6.9e-16 87.8 67 65.7
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 6.9e-16 87.8 65 72.3
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.2e-15 87.0 52 80.8
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.2e-15 87.0 55 76.4
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.5e-15 86.7 68 67.6
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 1.5e-15 86.7 76 55.3
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 3.4e-15 85.5 49 83.7
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 1.0e-14 84.0 68 64.7
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 2.9e-14 82.4 70 62.9
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 8.5e-14 80.9 68 61.8
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 3.2e-13 79.0 68 63.2
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 9.4e-13 77.4 68 57.4
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 2.7e-12 75.9 63 61.9
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 2.7e-12 75.9 63 61.9
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 7.9e-12 74.3 71 57.7
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 1.0e-11 73.9 61 57.4
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 1.8e-11 73.2 67 53.7
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 8.8e-11 70.9 84 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.7e-09 66.6 53 62.3
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 2.2e-09 66.2 43 79.1
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 5.9e-07 58.2 54 51.9


User provided reference genes

Program Settings