Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 4.2e-241 837.8 478 100.0
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 2.9e-149 532.7 439 64.0
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.8e-143 511.5 440 62.0
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 9.9e-142 507.7 490 56.3
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 9.9e-142 507.7 433 62.6
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 2.1e-139 500.0 433 62.8
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.7e-139 499.6 435 61.1
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.3e-138 497.3 450 58.0
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.7e-138 496.9 428 61.2
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 5.1e-138 495.4 424 62.0
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 8.6e-138 494.6 436 58.7
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.9e-137 493.4 441 59.9
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 4.7e-136 488.8 441 58.5
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 6.2e-136 488.4 426 59.9
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 4.4e-134 482.3 428 60.5
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 2.9e-133 479.6 424 60.4
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 6.4e-133 478.4 392 58.7
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 4.2e-132 475.7 397 58.2
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 7.1e-132 474.9 444 58.6
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.2e-131 474.2 435 57.9
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.6e-131 473.8 449 55.5
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 6.0e-131 471.9 438 56.2
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 3.0e-130 469.5 424 57.1
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.9e-130 469.2 424 56.8
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 5.1e-130 468.8 443 57.3
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.1e-129 467.6 391 57.8
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 3.3e-129 466.1 403 56.6
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 3.3e-129 466.1 392 58.4
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 4.3e-129 465.7 431 56.6
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 5.6e-129 465.3 423 58.6
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 2.1e-128 463.4 419 58.5
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 2.8e-128 463.0 435 56.1
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 3.6e-128 462.6 426 59.4
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 3.6e-128 462.6 441 56.2
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 2.4e-127 459.9 423 58.9
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 5.8e-126 455.3 390 58.7
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 9.9e-126 454.5 437 57.2
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 9.9e-126 454.5 438 55.9
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.7e-125 453.8 433 56.6
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 2.9e-125 453.0 432 56.5
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 4.9e-125 452.2 440 56.1
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 6.4e-125 451.8 441 54.0
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 1.9e-124 450.3 431 56.6
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 7.1e-124 448.4 429 56.9
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 7.1e-124 448.4 438 55.3
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 7.1e-124 448.4 364 60.7
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 9.3e-124 448.0 428 54.2
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 9.3e-124 448.0 428 54.2
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.2e-123 447.6 357 62.2
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.2e-123 447.6 415 56.9
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 1.6e-123 447.2 425 56.0
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 3.5e-123 446.0 442 55.0
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 7.9e-123 444.9 433 54.0
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 1.3e-122 444.1 419 56.6
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.3e-122 444.1 380 57.6
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 8.7e-122 441.4 432 54.2
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 2.5e-121 439.9 432 53.0
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 2.5e-121 439.9 356 60.1
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 3.3e-121 439.5 432 52.8
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 5.6e-121 438.7 432 54.6
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 7.4e-121 438.3 432 53.0
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 2.1e-120 436.8 424 52.4
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 3.6e-120 436.0 438 53.0
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 4.8e-120 435.6 428 52.6
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 4.8e-120 435.6 432 52.3
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 4.8e-120 435.6 432 52.3
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.4e-119 434.1 432 52.8
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 2.4e-119 433.3 432 53.7
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 2.6e-118 429.9 436 52.1
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 2.6e-118 429.9 444 54.5
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 6.4e-117 425.2 388 55.9
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 8.4e-117 424.9 390 54.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 2.4e-116 423.3 423 54.1
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 1.6e-115 420.6 344 60.5
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-115 420.6 355 58.9
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-115 420.6 355 58.9
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.3e-114 417.5 381 55.4
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.6e-112 410.6 352 58.0
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 8.1e-112 408.3 461 48.4
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 1.1e-111 407.9 436 51.8
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 1.8e-111 407.1 429 48.0
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 3.4e-110 402.9 396 52.0
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 7.1e-108 395.2 352 59.9
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.0e-106 391.3 395 50.1
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.1e-105 387.9 398 49.5
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 3.2e-100 369.8 350 52.6
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 3.0e-98 363.2 344 52.6
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.7e-96 356.3 343 55.7
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 6.9e-95 352.1 355 52.1
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 5.9e-94 349.0 419 43.7
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 7.2e-92 342.0 330 50.9
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 7.2e-92 342.0 345 55.1
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 3.6e-83 313.2 268 59.3
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.6e-78 297.7 336 47.9
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.5e-76 291.2 268 52.6
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.5e-65 254.6 435 36.8
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 1.5e-65 254.6 370 41.4
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 2.2e-61 240.7 404 38.6
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 3.8e-61 240.0 402 33.3
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.8e-58 231.1 300 46.0
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 3.7e-56 223.4 190 57.4
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 1.5e-49 201.4 436 34.4
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 8.3e-48 195.7 196 54.1
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.6e-46 191.4 277 44.0
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 5.8e-41 172.9 384 32.6
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.0e-37 160.6 132 59.1
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.9e-36 157.9 132 59.1
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 2.5e-36 157.5 128 59.4
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 3.9e-29 133.7 194 41.2
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 6.6e-13 79.7 104 45.2
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 3.6e-11 73.9 61 55.7
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 5.8e-09 66.6 81 61.7
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 2.2e-08 64.7 78 60.3
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 3.8e-08 63.9 83 59.0
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 1.4e-07 62.0 62 53.2
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.2e-06 58.9 89 52.8
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.6e-06 58.5 89 51.7
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 2.7e-06 57.8 89 51.7


User provided reference genes

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