Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01144 Eucalyptus grandis HOM05D001327 ORTHO05D005399 6.1e-38 160.2 75 100.0
CiPaw.03G242900 Carya illinoinensis HOM05D001327 ORTHO05D005399 9.4e-15 83.2 50 80.0
QL02p087951 Quercus lobata HOM05D001327 ORTHO05D005399 9.4e-15 83.2 65 67.7
PGR142G2283 Punica granatum HOM05D001327 ORTHO05D005399 1.6e-14 82.4 50 78.0
Gohir.A08G239100 Gossypium hirsutum HOM05D001327 ORTHO05D005399 2.7e-14 81.6 50 80.0
Gorai.004G277600 Gossypium raimondii HOM05D001327 ORTHO05D005399 2.7e-14 81.6 50 80.0
Manes.06G049400 Manihot esculenta HOM05D001327 ORTHO05D005399 2.7e-14 81.6 50 80.0
MD02G1034500 Malus domestica HOM05D001327 ORTHO05D005399 3.6e-14 81.3 65 63.1
Atru.chr7.1215 Acer truncatum HOM05D001327 ORTHO05D005399 4.7e-14 80.9 65 64.6
Potri.006G120700 Populus trichocarpa HOM05D001327 ORTHO05D005399 4.7e-14 80.9 65 66.2
GSVIVG01015514001 Vitis vinifera HOM05D001327 ORTHO05D005399 4.7e-14 80.9 52 73.1
Gohir.D06G055300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 6.1e-14 80.5 66 62.1
Sabra06G0094900 Salix brachista HOM05D001327 ORTHO05D005399 6.1e-14 80.5 50 78.0
TWI34G1767 Tripterygium wilfordii HOM05D001327 ORTHO05D005399 6.1e-14 80.5 65 61.5
CSS0001967 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 8.0e-14 80.1 65 66.2
CSS0040252 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 8.0e-14 80.1 65 66.2
Prupe.7G240800 Prunus persica HOM05D001327 ORTHO05D005399 8.0e-14 80.1 59 69.5
Hund09138 Selenicereus undatus HOM05D001327 ORTHO05D005399 8.0e-14 80.1 44 86.4
EL10Ac8g18630 Beta vulgaris HOM05D001327 ORTHO05D005399 1.0e-13 79.7 44 86.4
COL.COLO4_05782 Corchorus olitorius HOM05D001327 ORTHO05D005399 1.0e-13 79.7 50 78.0
Gorai.010G064600 Gossypium raimondii HOM05D001327 ORTHO05D005399 1.0e-13 79.7 66 62.1
Rhsim03G0247500 Rhododendron simsii HOM05D001327 ORTHO05D005399 1.0e-13 79.7 65 63.1
Nn8g39414 Nelumbo nucifera HOM05D001327 ORTHO05D005399 1.4e-13 79.3 66 63.6
FvH4_1g03540 Fragaria vesca HOM05D001327 ORTHO05D005399 1.8e-13 79.0 54 70.4
FAN19G1565 Fragaria x ananassa HOM05D001327 ORTHO05D005399 1.8e-13 79.0 54 70.4
Sc08g0006700 Simmondsia chinensis HOM05D001327 ORTHO05D005399 1.8e-13 79.0 50 74.0
Zm00001eb100060 Zea mays HOM05D001327 ORTHO05D005399 1.8e-13 79.0 50 76.0
Cfa003355 Carpinus fangiana HOM05D001327 ORTHO05D005399 2.3e-13 78.6 65 64.6
Gohir.A06G057000 Gossypium hirsutum HOM05D001327 ORTHO05D005399 2.3e-13 78.6 66 60.6
MD15G1175300 Malus domestica HOM05D001327 ORTHO05D005399 2.3e-13 78.6 65 63.1
Rhsim01G0074600 Rhododendron simsii HOM05D001327 ORTHO05D005399 2.3e-13 78.6 59 66.1
vmacro06123 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 2.3e-13 78.6 65 61.5
AUR62011113 Chenopodium quinoa HOM05D001327 ORTHO05D005399 3.0e-13 78.2 44 81.8
Dinv36539 Davidia involucrata HOM05D001327 ORTHO05D005399 3.0e-13 78.2 50 76.0
Duzib168G1530 Durio zibethinus HOM05D001327 ORTHO05D005399 3.0e-13 78.2 50 76.0
Thecc.09G124100 Theobroma cacao HOM05D001327 ORTHO05D005399 3.0e-13 78.2 50 76.0
Ciclev10008632m.g Citrus clementina HOM05D001327 ORTHO05D005399 4.0e-13 77.8 65 61.5
Haze_25606 Corylus avellana HOM05D001327 ORTHO05D005399 4.0e-13 77.8 65 63.1
FAN26G1748 Fragaria x ananassa HOM05D001327 ORTHO05D005399 4.0e-13 77.8 54 70.4
RcHm_v2.0_Chr2g0089031 Rosa chinensis HOM05D001327 ORTHO05D005399 4.0e-13 77.8 50 74.0
unitig_46.g18722 Utricularia gibba HOM05D001327 ORTHO05D005399 4.0e-13 77.8 59 64.4
CSS0003288 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 5.2e-13 77.4 50 76.0
CANSAT11G1188 Cannabis sativa HOM05D001327 ORTHO05D005399 5.2e-13 77.4 50 74.0
DCAR_014874 Daucus carota HOM05D001327 ORTHO05D005399 5.2e-13 77.4 50 76.0
Duzib150G0117 Durio zibethinus HOM05D001327 ORTHO05D005399 5.2e-13 77.4 44 81.8
ECA240G0392 Erigeron canadensis HOM05D001327 ORTHO05D005399 5.2e-13 77.4 45 82.2
FAN28G2560 Fragaria x ananassa HOM05D001327 ORTHO05D005399 5.2e-13 77.4 54 68.5
Gohir.A07G035300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 5.2e-13 77.4 50 76.0
Gohir.D07G039300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 5.2e-13 77.4 50 76.0
Gorai.001G041400 Gossypium raimondii HOM05D001327 ORTHO05D005399 5.2e-13 77.4 50 76.0
RcHm_v2.0_Chr2g0088751 Rosa chinensis HOM05D001327 ORTHO05D005399 5.2e-13 77.4 54 68.5
RcHm_v2.0_Chr2g0088981 Rosa chinensis HOM05D001327 ORTHO05D005399 5.2e-13 77.4 54 68.5
Sed0000453 Sechium edule HOM05D001327 ORTHO05D005399 5.2e-13 77.4 65 63.1
THA.LOC104815261 Tarenaya hassleriana HOM05D001327 ORTHO05D005399 5.2e-13 77.4 50 78.0
TAR626G1113 Trochodendron aralioides HOM05D001327 ORTHO05D005399 5.2e-13 77.4 50 74.0
CSS0028454 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 6.8e-13 77.0 50 76.0
Cpa.g.sc75.48 Carica papaya HOM05D001327 ORTHO05D005399 6.8e-13 77.0 50 76.0
PSO455G0151 Papaver somniferum HOM05D001327 ORTHO05D005399 6.8e-13 77.0 59 67.8
Solyc08g066820.3 Solanum lycopersicum HOM05D001327 ORTHO05D005399 6.8e-13 77.0 44 81.8
Sopen08g020780 Solanum pennellii HOM05D001327 ORTHO05D005399 6.8e-13 77.0 44 81.8
PGSC0003DMG401009603 Solanum tuberosum HOM05D001327 ORTHO05D005399 6.8e-13 77.0 44 81.8
SGA_v2.0_scaffold229G43327 Striga asiatica HOM05D001327 ORTHO05D005399 6.8e-13 77.0 65 64.6
MSTRG.19605 Avicennia marina HOM05D001327 ORTHO05D005399 8.8e-13 76.6 50 76.0
Glyma.04G148300 Glycine max HOM05D001327 ORTHO05D005399 8.8e-13 76.6 54 68.5
PSO170G6854 Papaver somniferum HOM05D001327 ORTHO05D005399 8.8e-13 76.6 59 66.1
TWI32G0662 Tripterygium wilfordii HOM05D001327 ORTHO05D005399 8.8e-13 76.6 50 70.0
vmacro16513 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 8.8e-13 76.6 65 61.5
Glyma.06G216800 Glycine max HOM05D001327 ORTHO05D005399 1.2e-12 76.3 50 72.0
THA.LOC104808999 Tarenaya hassleriana HOM05D001327 ORTHO05D005399 1.2e-12 76.3 50 76.0
CDE07G0693 Ceratophyllum demersum HOM05D001327 ORTHO05D005399 1.5e-12 75.9 65 64.6
Dinv41523 Davidia involucrata HOM05D001327 ORTHO05D005399 1.5e-12 75.9 65 63.1
ECA236G0859 Erigeron canadensis HOM05D001327 ORTHO05D005399 1.5e-12 75.9 51 72.5
Migut.J01173 Erythranthe guttata HOM05D001327 ORTHO05D005399 1.5e-12 75.9 44 84.1
HanXRQChr05g0140591 Helianthus annuus HOM05D001327 ORTHO05D005399 1.5e-12 75.9 51 70.6
Actinidia26397 Actinidia chinensis HOM05D001327 ORTHO05D005399 2.0e-12 75.5 50 72.0
ClCG08G003060 Citrullus lanatus HOM05D001327 ORTHO05D005399 2.0e-12 75.5 54 68.5
MELO3C024971.2 Cucumis melo HOM05D001327 ORTHO05D005399 2.0e-12 75.5 54 68.5
CsaV3_6G002870 Cucumis sativus L. HOM05D001327 ORTHO05D005399 2.0e-12 75.5 54 68.5
AT2G26830 Arabidopsis thaliana HOM05D001327 ORTHO05D005399 2.6e-12 75.1 44 81.8
FAN23G0800 Fragaria x ananassa HOM05D001327 ORTHO05D005399 2.6e-12 75.1 54 68.5
MBI04_g07642_MAGBIO Magnolia biondii HOM05D001327 ORTHO05D005399 2.6e-12 75.1 59 64.4
Carub.0004s0730 Capsella rubella HOM05D001327 ORTHO05D005399 3.4e-12 74.7 44 81.8
Lsat_1_v5_gn_8_59061 Lactuca sativa HOM05D001327 ORTHO05D005399 3.4e-12 74.7 51 70.6
Zm00001eb313980 Zea mays HOM05D001327 ORTHO05D005399 3.4e-12 74.7 54 68.5
ATR1156G060 Amborella trichopoda HOM05D001327 ORTHO05D005399 4.4e-12 74.3 65 60.0
Nitab4.5_0002551g0010 Nicotiana tabacum HOM05D001327 ORTHO05D005399 4.4e-12 74.3 50 70.0
Nitab4.5_0010615g0020 Nicotiana tabacum HOM05D001327 ORTHO05D005399 4.4e-12 74.3 50 70.0
Actinidia40460 Actinidia chinensis HOM05D001327 ORTHO05D005399 5.7e-12 73.9 50 70.0
Aqoxy7G03725 Aquilegia oxysepala HOM05D001327 ORTHO05D005399 5.7e-12 73.9 48 72.9
Sp4g08910 Schrenkiella parvula HOM05D001327 ORTHO05D005399 5.7e-12 73.9 50 72.0
AL4G20030 Arabidopsis lyrata HOM05D001327 ORTHO05D005399 7.5e-12 73.6 44 79.5
TAR090G0001 Trochodendron aralioides HOM05D001327 ORTHO05D005399 7.5e-12 73.6 50 70.0
VMungo1309G1396 Vigna mungo HOM05D001327 ORTHO05D005399 7.5e-12 73.6 48 70.8
CARHR119010 Cardamine hirsuta HOM05D001327 ORTHO05D005399 9.7e-12 73.2 44 79.5
Aa31LG5G9080 Aethionema arabicum HOM05D001327 ORTHO05D005399 1.3e-11 72.8 50 72.0
Cc06_g08690 Coffea canephora HOM05D001327 ORTHO05D005399 1.3e-11 72.8 50 74.0
Lj1g0004272 Lotus japonicus HOM05D001327 ORTHO05D005399 1.3e-11 72.8 50 68.0
Lalb_Chr11g0072051 Lupinus albus HOM05D001327 ORTHO05D005399 1.3e-11 72.8 50 68.0
Nn2g12004 Nelumbo nucifera HOM05D001327 ORTHO05D005399 1.3e-11 72.8 50 74.0
Thhalv10002015m.g Eutrema salsugineum HOM05D001327 ORTHO05D005399 1.7e-11 72.4 50 72.0
Phvul.009G197300 Phaseolus vulgaris HOM05D001327 ORTHO05D005399 2.2e-11 72.0 48 68.8
Lj7A630G51 Lonicera japonica HOM05D001327 ORTHO05D005399 2.8e-11 71.6 73 57.5
CAN.G1757.2 Capsicum annuum HOM05D001327 ORTHO05D005399 4.8e-11 70.9 44 77.3
Lalb_Chr08g0234481 Lupinus albus HOM05D001327 ORTHO05D005399 4.8e-11 70.9 50 66.0
Os09g0438400 Oryza sativa ssp. japonica HOM05D001327 ORTHO05D005399 4.8e-11 70.9 48 68.8
BcaC02g10832 Brassica carinata HOM05D001327 ORTHO05D005399 6.3e-11 70.5 51 72.5
C04p24660 Brassica napus HOM05D001327 ORTHO05D005399 6.3e-11 70.5 51 72.5
BolC4t23972H Brassica oleracea HOM05D001327 ORTHO05D005399 6.3e-11 70.5 51 72.5
A07p17790 Brassica napus HOM05D001327 ORTHO05D005399 1.8e-10 68.9 50 72.0
BraA07t29498Z Brassica rapa HOM05D001327 ORTHO05D005399 1.8e-10 68.9 50 72.0
HanXRQChr09g0242321 Helianthus annuus HOM05D001327 ORTHO05D005399 2.4e-10 68.6 45 71.1
Ca_03162_v3 Cicer arietinum L. HOM05D001327 ORTHO05D005399 5.3e-10 67.4 50 62.0
HPP92_016221 Vanilla planifolia HOM05D001327 ORTHO05D005399 7.0e-10 67.0 50 66.0
HPP92_016245 Vanilla planifolia HOM05D001327 ORTHO05D005399 7.0e-10 67.0 50 66.0
TPR.G31097 Trifolium pratense HOM05D001327 ORTHO05D005399 9.1e-10 66.6 50 62.0
TPR.G33130 Trifolium pratense HOM05D001327 ORTHO05D005399 9.1e-10 66.6 50 62.0
arahy.Tifrunner.gnm1.ann1.73D391 Arachis hypogaea HOM05D001327 ORTHO05D005399 1.2e-09 66.2 50 60.0
Medtr2g054370 Medicago truncatula HOM05D001327 ORTHO05D005399 1.6e-09 65.9 50 64.0
arahy.Tifrunner.gnm1.ann1.F76PC0 Arachis hypogaea HOM05D001327 ORTHO05D005399 2.7e-09 65.1 50 58.0
Psat1g025840 Pisum sativum HOM05D001327 ORTHO05D005399 2.9e-08 61.6 50 56.0
arahy.Tifrunner.gnm1.ann1.4EC4CX Arachis hypogaea HOM05D001327 ORTHO05D005399 1.5e-07 59.3 50 58.0
Mapoly0033s0126 Marchantia polymorpha HOM05D001327 ORTHO05D005399 1.9e-07 58.9 42 64.3
Thhalv10019586m.g Eutrema salsugineum HOM05D001327 ORTHO05D005399 4.2e-07 57.8 39 69.2
Lsat_1_v5_gn_7_45660 Lactuca sativa HOM05D001327 ORTHO05D005399 5.5e-07 57.4 32 84.4
SHI18655 Sapria himalayana HOM05D001327 ORTHO05D005399 5.5e-07 57.4 59 52.5
SalBow5G4768 Salvia bowleyana HOM05D001327 ORTHO05D005399 1.6e-06 55.8 37 70.3
SMO358G0053 Selaginella moellendorffii HOM05D001327 ORTHO05D005399 2.1e-06 55.5 45 60.0
unitig_747.g21802 Utricularia gibba HOM05D001327 ORTHO05D005399 2.1e-06 55.5 42 57.1
Ah.09g226330 Amaranthus hybridus HOM05D001327 ORTHO05D005399 8.0e-06 53.5 31 77.4


User provided reference genes

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