Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 0.0e+00 1274.2 710 100.0
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 2.9e-230 802.4 713 67.6
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 6.9e-224 781.2 701 66.9
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 4.2e-221 771.9 712 65.4
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 1.8e-219 766.5 715 66.3
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 1.1e-218 763.8 715 66.0
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.8e-217 759.2 717 64.9
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 2.0e-215 753.1 712 64.9
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 5.8e-215 751.5 701 65.2
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.7e-214 750.0 715 64.5
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 1.1e-213 747.3 715 63.8
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 5.5e-213 745.0 713 64.2
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 1.6e-212 743.4 713 63.8
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 1.6e-212 743.4 757 61.8
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.1e-212 743.0 713 64.0
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 3.5e-212 742.3 716 64.1
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 4.6e-212 741.9 720 64.2
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 7.9e-212 741.1 712 63.9
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 1.3e-211 740.3 717 64.2
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.6e-210 734.2 719 62.9
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 2.4e-208 729.6 713 63.3
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 4.0e-208 728.8 715 62.7
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 5.3e-208 728.4 714 62.7
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.3e-206 723.8 714 63.4
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 2.5e-205 719.5 731 61.7
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.1e-204 716.5 713 63.1
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.6e-204 715.3 729 61.6
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.8e-203 713.4 713 62.0
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 2.3e-203 713.0 719 62.7
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.7e-203 711.1 720 61.1
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.5e-202 710.3 717 62.3
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 3.7e-201 705.7 733 61.1
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 2.4e-200 703.0 722 61.6
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 3.1e-200 702.6 717 60.1
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.6e-199 699.5 713 61.4
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 1.3e-198 697.2 722 61.2
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 1.7e-198 696.8 611 68.6
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 3.2e-197 692.6 727 59.8
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 5.5e-197 691.8 739 59.8
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.6e-196 690.3 727 59.8
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 9.7e-194 681.0 772 57.3
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 4.8e-193 678.7 720 61.2
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 4.8e-193 678.7 720 59.9
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 2.6e-191 672.9 705 60.4
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 2.2e-190 669.8 713 60.6
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 2.9e-190 669.5 614 66.0
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 3.8e-190 669.1 712 60.4
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 1.4e-189 667.2 725 58.9
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 1.2e-188 664.1 725 59.2
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 4.6e-188 662.1 716 60.6
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 2.0e-183 646.7 727 58.3
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.4e-183 646.0 742 56.9
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 1.7e-182 643.7 735 58.0
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 2.2e-182 643.3 732 57.2
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 2.2e-182 643.3 733 57.7
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 2.9e-182 642.9 732 57.4
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 5.0e-182 642.1 731 58.5
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 7.2e-181 638.3 746 56.3
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 2.7e-180 636.3 719 58.0
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.4e-179 634.0 718 57.1
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 3.0e-179 632.9 709 58.7
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 6.7e-179 631.7 657 60.7
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 6.7e-179 631.7 720 57.1
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 1.1e-178 630.9 726 57.4
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.1e-178 630.9 732 57.5
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 1.1e-178 630.9 716 57.1
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 1.5e-178 630.6 725 56.6
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 5.7e-178 628.6 741 56.5
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 5.7e-178 628.6 719 58.0
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 2.8e-177 626.3 711 56.8
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 4.8e-177 625.5 713 57.4
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 2.4e-176 623.2 724 57.0
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 5.3e-176 622.1 745 56.1
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 7.7e-175 618.2 730 55.9
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.9e-174 616.3 733 56.5
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 1.5e-173 614.0 733 56.2
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.9e-173 613.6 733 56.3
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 3.2e-173 612.8 636 60.8
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 1.0e-171 607.8 718 57.7
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.5e-170 604.0 742 55.4
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 1.6e-167 594.0 743 54.8
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 4.5e-167 592.4 717 55.2
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.5e-165 587.4 463 71.7
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 4.2e-165 585.9 732 54.2
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 5.5e-165 585.5 717 55.1
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 3.6e-164 582.8 714 54.9
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 3.0e-163 579.7 720 55.0
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 3.0e-163 579.7 726 52.9
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 8.8e-163 578.2 716 53.8
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 9.8e-162 574.7 720 54.2
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 2.8e-161 573.2 726 52.3
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 4.1e-160 569.3 722 53.3
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.6e-159 567.4 722 53.2
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 5.0e-158 562.4 763 52.0
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.9e-157 560.5 743 52.8
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.8e-156 556.6 802 49.3
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 4.0e-155 552.7 720 52.5
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 6.8e-155 552.0 763 49.5
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 9.8e-154 548.1 733 51.8
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.7e-153 547.4 738 51.6
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 5.9e-151 538.9 702 51.4
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 1.2e-148 531.2 380 77.6
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 7.8e-143 511.9 731 49.4
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 6.6e-142 508.8 730 48.2
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 6.2e-140 502.3 733 49.5
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 1.2e-138 498.0 620 54.4
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 3.7e-129 466.5 690 48.8
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 5.4e-128 462.6 449 63.7
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.2e-119 434.9 534 54.9
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 2.0e-106 391.0 515 52.8
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.7e-105 387.9 515 52.6
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 6.0e-103 379.4 716 42.2
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 3.7e-92 343.6 229 81.7
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 1.9e-88 331.3 236 79.7
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 9.7e-85 318.9 435 51.3
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.1e-83 313.9 220 78.2
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 3.1e-83 313.9 220 78.2
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 1.4e-78 298.5 231 71.9
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 3.3e-77 293.9 184 85.9
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 5.7e-77 293.1 231 72.7
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 5.7e-77 293.1 435 49.4
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.6e-63 248.4 173 78.0
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 4.7e-63 246.9 543 38.1
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 6.1e-63 246.5 382 45.3
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-56 225.3 440 41.1
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-56 225.3 136 88.2
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 1.8e-54 218.4 679 33.0
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 1.1e-43 182.6 412 39.8
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 4.2e-40 170.6 532 33.3
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 6.3e-36 156.8 208 53.4
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 5.9e-34 150.2 282 44.7
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.9e-32 145.2 94 80.9
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 3.4e-29 134.4 189 51.9
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 3.2e-27 127.9 86 79.1
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 9.2e-27 126.3 212 44.8
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 3.5e-26 124.4 243 38.7
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.3e-20 103.2 72 73.6
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-19 102.4 70 75.7
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-19 102.4 70 75.7
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 1.4e-19 102.4 70 75.7
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.9e-17 94.4 70 74.3
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 1.2e-15 89.4 457 27.8
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 2.1e-15 88.6 297 31.6
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 9.2e-11 73.2 306 28.4
ATR0693G380 Amborella trichopoda HOM05D004485 ORTHO05D005485 3.0e-09 68.2 76 53.9
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 4.3e-08 64.3 50 76.0
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 4.3e-08 64.3 67 55.2
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 1.6e-07 62.4 355 23.7
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 1.4e-06 59.3 467 25.1
Gohir.D12G269100 Gossypium hirsutum HOM05D004897 ORTHO05D005928 8.9e-06 56.6 353 23.5


User provided reference genes

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