Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 1.2e-200 703.0 365 100.0
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.5e-121 440.3 308 73.1
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.0e-114 417.5 298 70.5
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 4.3e-113 412.1 297 70.7
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.1e-111 407.5 285 71.2
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 5.3e-111 405.2 297 70.0
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.5e-110 403.7 285 70.2
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.5e-110 403.7 285 70.2
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 9.9e-110 401.0 281 72.6
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 4.9e-109 398.7 307 66.4
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 1.4e-108 397.1 294 68.7
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 1.9e-108 396.7 297 68.7
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 2.4e-108 396.4 306 61.8
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.2e-107 394.0 292 65.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 2.7e-107 392.9 299 67.6
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 1.0e-106 391.0 307 63.5
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-106 390.6 296 67.9
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.3e-106 390.6 307 65.8
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.8e-106 390.2 307 65.1
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.8e-106 390.2 307 65.1
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 3.0e-106 389.4 298 66.8
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.9e-106 389.0 307 65.5
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.1e-105 387.5 298 64.8
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 4.3e-105 385.6 299 64.5
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 7.4e-105 384.8 299 64.2
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.3e-104 384.0 307 64.5
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 1.6e-104 383.6 293 66.2
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 2.1e-104 383.3 299 61.2
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.8e-104 382.9 296 62.2
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.1e-103 380.9 292 68.2
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.8e-103 380.2 292 65.4
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.1e-103 379.4 297 64.6
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 3.1e-103 379.4 296 64.9
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 5.3e-103 378.6 303 60.7
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 6.9e-103 378.3 294 63.9
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 2.0e-102 376.7 296 64.5
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 2.0e-102 376.7 295 64.7
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 2.0e-102 376.7 298 63.8
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 2.6e-102 376.3 309 64.4
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 4.5e-102 375.6 297 65.0
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 4.5e-102 375.6 308 63.3
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 1.0e-101 374.4 298 63.4
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 1.3e-101 374.0 312 60.9
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.3e-101 374.0 293 65.5
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.7e-101 373.6 296 64.2
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.7e-101 373.6 296 64.2
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.9e-101 372.9 309 61.8
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 3.8e-101 372.5 292 64.7
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 4.9e-101 372.1 302 63.9
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.1e-100 370.9 296 62.2
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 1.9e-100 370.2 297 65.0
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 5.5e-100 368.6 298 62.8
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 7.1e-100 368.2 298 62.8
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 9.3e-100 367.9 306 60.8
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 9.3e-100 367.9 298 63.1
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 2.1e-99 366.7 288 65.6
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 2.7e-99 366.3 301 64.8
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 7.9e-99 364.8 311 60.5
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.3e-98 364.0 280 63.9
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.0e-98 362.8 304 60.2
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 3.9e-98 362.5 288 65.3
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 3.9e-98 362.5 307 62.9
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 5.1e-98 362.1 306 62.7
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 8.7e-98 361.3 301 58.8
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 3.3e-97 359.4 299 63.9
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 5.7e-97 358.6 293 63.8
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 9.6e-97 357.8 291 59.1
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 9.6e-97 357.8 302 63.6
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 9.6e-97 357.8 302 63.6
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.4e-95 354.0 306 63.1
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 1.4e-95 354.0 294 62.9
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 1.8e-95 353.6 257 68.9
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 4.1e-95 352.4 297 60.9
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 5.3e-95 352.1 299 63.2
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 6.9e-95 351.7 306 62.7
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 1.5e-94 350.5 330 59.4
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 1.5e-94 350.5 314 59.6
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 2.0e-94 350.1 293 61.4
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 5.8e-94 348.6 307 61.9
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.7e-93 347.1 291 62.2
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 2.2e-93 346.7 295 61.4
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 2.9e-93 346.3 307 61.6
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 2.9e-93 346.3 289 62.3
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 5.0e-93 345.5 292 60.6
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-92 344.4 323 58.8
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.9e-92 343.6 302 61.9
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 5.5e-92 342.0 305 60.0
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 7.2e-92 341.7 301 59.8
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 7.2e-92 341.7 265 63.4
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.6e-91 340.5 308 58.8
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 2.1e-91 340.1 298 59.1
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 3.5e-91 339.3 281 64.1
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 4.6e-91 339.0 303 60.1
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 6.1e-91 338.6 297 59.6
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 3.0e-90 336.3 229 73.8
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 5.1e-90 335.5 294 60.5
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 9.7e-89 331.3 298 59.1
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 3.7e-88 329.3 287 58.5
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 8.2e-88 328.2 240 69.6
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 3.1e-87 326.2 297 58.6
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 3.1e-87 326.2 296 56.1
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 1.5e-86 323.9 292 59.6
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 2.6e-86 323.2 301 56.8
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.7e-85 320.5 303 56.8
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 6.5e-85 318.5 290 57.2
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.1e-84 317.8 354 50.3
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 2.1e-83 313.5 309 57.0
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 2.1e-83 313.5 290 56.6
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 7.9e-83 311.6 263 60.5
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.8e-82 310.5 296 52.4
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.5e-81 307.4 295 52.5
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 2.0e-81 307.0 256 61.3
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 2.0e-81 307.0 308 51.9
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 3.3e-81 306.2 296 51.4
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 9.7e-81 304.7 306 54.6
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 2.6e-73 280.0 229 65.5
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 9.7e-73 278.1 225 58.2
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 8.2e-72 275.0 310 52.6
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.1e-68 264.6 276 52.2
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 2.0e-65 253.8 296 50.3
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.3e-64 251.1 294 49.7
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 2.2e-64 250.4 322 43.5
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 5.0e-61 239.2 228 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 4.4e-57 226.1 216 56.5
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 2.9e-53 213.4 180 60.0
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 1.4e-50 204.5 196 50.5
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 1.1e-44 184.9 201 47.3
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 8.0e-43 178.7 257 38.1
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 2.4e-39 167.2 276 39.9
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 2.6e-33 147.1 131 57.3
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 7.5e-33 145.6 99 69.7
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.0e-30 137.5 133 54.1
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.0e-30 137.5 133 54.1
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 5.6e-28 129.4 224 33.5
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 3.4e-25 120.2 168 39.3
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 4.1e-23 113.2 229 31.4
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.5e-22 110.2 66 71.2
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 6.0e-22 109.4 68 70.6
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 7.3e-20 102.4 94 58.5
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 3.4e-17 93.6 64 67.2
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.3e-16 91.7 62 67.7
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.4e-15 88.2 52 75.0
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 5.4e-15 86.3 119 47.9
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 5.6e-12 76.3 52 65.4
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 6.2e-11 72.8 126 44.4
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 8.1e-11 72.4 45 66.7
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 1.4e-10 71.6 45 66.7
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 4.0e-10 70.1 115 41.7
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 4.4e-09 66.6 39 71.8
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.4e-09 66.6 54 57.4
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 2.2e-08 64.3 43 67.4


User provided reference genes

Program Settings