Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 7.3e-176 620.5 336 100.0
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 2.7e-117 426.0 292 74.7
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.7e-117 426.0 292 74.7
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.5e-115 419.5 292 75.3
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 3.2e-115 419.1 293 67.6
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 9.4e-115 417.5 276 77.2
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 1.0e-113 414.1 292 74.3
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 6.8e-113 411.4 259 73.7
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 7.5e-112 407.9 339 61.7
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 1.3e-111 407.1 292 65.1
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 1.7e-111 406.8 343 65.6
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 2.2e-111 406.4 320 70.0
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.8e-110 403.3 317 63.1
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.8e-110 403.3 334 62.6
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 1.8e-110 403.3 310 66.1
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 4.1e-110 402.1 320 66.2
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 5.4e-110 401.7 334 62.9
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 1.2e-109 400.6 312 67.9
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 2.7e-109 399.4 341 59.8
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 1.3e-108 397.1 291 68.7
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 6.6e-108 394.8 293 63.1
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 1.5e-107 393.7 337 67.1
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 5.5e-107 391.7 266 74.4
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 2.1e-106 389.8 323 64.7
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 6.1e-106 388.3 323 62.8
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 1.4e-105 387.1 259 69.1
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 4.0e-105 385.6 332 63.3
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 2.6e-104 382.9 339 66.4
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 3.4e-104 382.5 293 67.6
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 1.3e-103 380.6 259 71.4
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 1.3e-103 380.6 309 57.9
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 2.2e-103 379.8 255 75.7
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 2.8e-103 379.4 260 67.7
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 2.8e-103 379.4 292 64.7
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.7e-103 379.0 349 59.6
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 1.4e-102 377.1 260 67.3
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 1.8e-102 376.7 321 61.1
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 1.8e-102 376.7 259 68.7
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 4.1e-102 375.6 293 63.1
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 5.0e-100 368.6 337 58.5
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.5e-99 367.1 296 62.2
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 5.6e-99 365.2 333 61.9
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 1.0e-97 360.9 319 60.8
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 1.0e-97 360.9 325 62.8
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 2.3e-97 359.8 319 61.1
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 2.3e-97 359.8 259 66.0
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 8.9e-97 357.8 290 60.7
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.3e-95 354.0 295 68.5
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 8.3e-95 351.3 322 62.1
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 8.3e-95 351.3 254 63.8
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 3.2e-94 349.4 293 59.4
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 4.1e-94 349.0 292 58.6
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 6.0e-93 345.1 291 68.7
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 7.8e-93 344.7 328 54.9
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 5.0e-92 342.0 235 69.4
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 8.6e-92 341.3 238 68.5
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 1.9e-91 340.1 255 71.8
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 1.6e-90 337.0 310 62.3
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 1.6e-90 337.0 291 67.7
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 2.8e-90 336.3 292 57.5
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 2.8e-90 336.3 291 62.9
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 3.6e-90 335.9 256 71.1
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 8.0e-90 334.7 256 70.7
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.1e-89 334.3 333 62.2
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 1.8e-89 333.6 238 67.2
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 5.2e-89 332.0 291 67.0
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 8.9e-89 331.3 249 70.7
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 1.2e-88 330.9 291 65.3
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 2.6e-88 329.7 333 61.0
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.3e-87 327.4 223 68.2
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 8.3e-87 324.7 298 56.7
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 9.2e-86 321.2 212 74.1
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 4.3e-83 312.4 244 59.4
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 1.7e-79 300.4 335 57.3
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 1.4e-78 297.4 194 77.3
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 3.2e-78 296.2 192 74.0
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 2.3e-76 290.0 203 74.4
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 8.6e-76 288.1 319 51.7
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 5.6e-75 285.4 289 53.6
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 6.2e-74 282.0 252 57.1
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 6.2e-74 282.0 337 48.1
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 8.1e-74 281.6 323 55.7
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 3.4e-72 276.2 303 54.1
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 1.7e-71 273.9 203 64.5
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 3.8e-71 272.7 270 59.6
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 4.9e-71 272.3 237 64.1
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 3.2e-70 269.6 203 67.5
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 8.7e-68 261.5 187 75.9
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 8.7e-68 261.5 336 53.3
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 1.1e-67 261.2 335 47.8
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 7.6e-64 248.4 253 52.6
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.9e-63 246.5 166 66.9
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 7.1e-62 241.9 338 47.0
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 9.3e-62 241.5 348 48.6
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 1.9e-59 233.8 156 71.8
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 2.5e-59 233.4 275 54.9
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 1.4e-57 227.6 208 55.3
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 6.4e-55 218.8 347 47.0
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 9.3e-54 214.9 220 57.3
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 1.8e-52 210.7 191 58.6
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 1.8e-52 210.7 289 45.0
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 3.3e-51 206.5 192 61.5
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 8.1e-50 201.8 163 68.1
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 1.8e-49 200.7 135 80.0
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.2e-47 193.7 244 46.3
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 1.9e-46 190.7 266 44.0
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 5.5e-46 189.1 158 62.0
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 1.6e-45 187.6 236 52.1
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 1.9e-43 180.6 289 38.1
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 4.0e-41 172.9 178 62.4
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.2e-40 171.4 124 64.5
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 1.4e-38 164.5 266 40.6
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 1.4e-38 164.5 337 35.3
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 1.0e-36 158.3 127 74.8
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 1.3e-34 151.4 143 56.6
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 5.9e-32 142.5 98 72.4
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 4.6e-29 132.9 91 65.9
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 7.9e-29 132.1 91 65.9
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 1.0e-28 131.7 105 60.0
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 4.3e-27 126.3 258 32.2
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 4.8e-26 122.9 91 61.5
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.5e-24 117.9 120 53.3
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 2.1e-21 107.5 121 51.2
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 2.7e-21 107.1 91 58.2
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 1.1e-19 101.7 101 54.5
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 1.4e-17 94.7 58 75.9
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 7.0e-17 92.4 268 37.3
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 5.9e-16 89.4 62 69.4
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.0e-15 88.6 67 65.7
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 2.2e-15 87.4 88 54.5
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 1.2e-13 81.6 51 72.5
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 2.6e-11 73.9 55 61.8
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 4.4e-11 73.2 72 50.0
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 7.0e-09 65.9 51 58.8
C01p09890 Brassica napus HOM05D006034 ORTHO05D041974 5.9e-08 62.8 85 45.9


User provided reference genes

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