Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 4.6e-107 391.3 215 100.0
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.5e-52 209.5 210 61.9
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.5e-52 209.5 190 66.3
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.9e-47 193.4 190 63.7
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 3.1e-42 176.0 245 46.1
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 3.2e-39 166.0 222 51.4
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.5e-36 156.4 225 42.7
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.1e-35 153.3 187 49.2
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.8e-34 150.2 223 49.3
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 4.0e-34 149.1 211 46.0
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 5.2e-34 148.7 236 50.0
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.9e-34 147.9 205 42.9
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.9e-34 147.9 205 42.9
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.4e-32 141.4 165 55.8
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.4e-31 140.6 217 49.8
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.4e-31 139.8 205 42.0
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 7.1e-31 138.3 272 43.8
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.2e-30 137.5 232 41.8
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.1e-30 136.7 205 41.0
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.3e-29 133.3 211 42.7
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.3e-29 133.3 191 46.6
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 6.6e-29 131.7 223 41.7
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 6.2e-27 125.2 229 46.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.1e-26 122.9 223 39.9
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 9.9e-25 117.9 154 59.1
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 9.9e-25 117.9 200 41.0
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 1.3e-24 117.5 180 42.8
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.3e-24 117.5 190 39.5
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-24 117.5 190 39.5
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 1.3e-24 117.5 202 41.1
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 1.7e-24 117.1 155 49.7
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 3.8e-24 115.9 183 42.6
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 4.9e-24 115.5 171 45.0
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 8.4e-24 114.8 214 39.7
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.4e-23 114.0 212 46.7
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 2.4e-23 113.2 177 42.9
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.2e-23 112.8 174 43.7
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.7e-22 109.8 272 32.4
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.5e-22 109.4 153 46.4
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 6.0e-22 108.6 187 40.1
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 1.0e-21 107.8 179 41.9
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.3e-21 107.5 188 40.4
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.3e-21 107.5 180 43.9
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.3e-21 107.5 177 40.1
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.3e-21 107.5 109 66.1
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.7e-21 107.1 193 37.3
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 5.1e-21 105.5 188 39.9
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 5.1e-21 105.5 188 39.9
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 5.1e-21 105.5 215 38.6
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.3e-20 102.8 187 39.0
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 4.3e-20 102.4 183 47.5
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 5.6e-20 102.1 186 39.8
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 7.3e-20 101.7 150 42.0
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 9.6e-20 101.3 188 39.4
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 9.6e-20 101.3 184 38.6
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.8e-19 99.8 204 37.7
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 3.6e-19 99.4 177 40.1
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 3.6e-19 99.4 177 40.1
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 3.6e-19 99.4 120 57.5
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 6.2e-19 98.6 186 39.8
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 1.1e-18 97.8 174 39.7
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.1e-18 97.8 197 43.7
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.4e-18 97.4 183 39.3
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.4e-18 96.7 171 39.2
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 3.1e-18 96.3 195 44.6
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 3.1e-18 96.3 177 45.8
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 5.3e-18 95.5 177 44.6
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 5.3e-18 95.5 187 39.0
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 5.3e-18 95.5 177 44.6
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 5.3e-18 95.5 187 39.0
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.5e-17 94.0 174 46.6
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-17 94.0 178 44.4
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.5e-17 94.0 114 62.3
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 2.6e-17 93.2 176 40.9
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 7.6e-17 91.7 210 36.2
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 7.6e-17 91.7 180 37.8
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 9.9e-17 91.3 224 35.3
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.2e-16 90.1 52 84.6
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.8e-16 89.4 118 55.1
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 4.9e-16 89.0 152 40.1
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 8.4e-16 88.2 210 34.3
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 2.4e-15 86.7 152 39.5
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 5.4e-15 85.5 192 33.9
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.2e-14 84.3 195 39.0
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 2.7e-14 83.2 82 69.5
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.6e-14 82.4 111 54.1
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 6.0e-14 82.0 149 41.6
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 6.0e-14 82.0 89 64.0
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.0e-13 81.3 82 67.1
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.0e-13 81.3 189 34.4
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.0e-13 81.3 48 79.2
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 1.3e-13 80.9 104 54.8
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.3e-13 80.9 88 61.4
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 1.8e-13 80.5 111 54.1
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.8e-13 80.5 194 32.0
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 2.3e-13 80.1 79 54.4
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 3.9e-13 79.3 104 54.8
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 3.9e-13 79.3 72 61.1
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.1e-13 79.0 56 69.6
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 6.7e-13 78.6 181 44.8
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 6.7e-13 78.6 314 31.5
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.7e-13 78.2 55 67.3
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 8.7e-13 78.2 82 67.1
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 8.7e-13 78.2 58 67.2
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.5e-12 77.4 78 69.2
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.5e-12 77.4 85 65.9
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.5e-12 77.4 90 60.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.5e-12 77.4 167 36.5
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.9e-12 77.0 174 41.4
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 3.3e-12 76.3 150 35.3
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.3e-12 76.3 179 32.4
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.4e-12 75.1 86 61.6
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 7.4e-12 75.1 82 67.1
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.4e-12 75.1 83 60.2
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 9.6e-12 74.7 75 68.0
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 9.6e-12 74.7 56 66.1
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.3e-11 74.3 81 65.4
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.6e-11 73.9 90 60.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.6e-11 73.9 56 62.5
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.1e-11 73.6 90 58.9
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.1e-11 73.6 88 47.7
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 2.8e-11 73.2 86 61.6
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 3.6e-11 72.8 126 49.2
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 3.6e-11 72.8 89 61.8
MD13G1283500 Malus domestica HOM05D003238 ORTHO05D003571 4.8e-11 72.4 108 44.4
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.8e-11 72.4 90 60.0
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 4.8e-11 72.4 87 58.6
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 6.2e-11 72.0 103 53.4
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 6.2e-11 72.0 81 61.7
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 6.2e-11 72.0 81 63.0
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.2e-11 72.0 76 51.3
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 8.1e-11 71.6 140 38.6
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.4e-10 70.9 90 56.7
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.8e-10 70.5 97 59.8
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.8e-10 70.5 72 66.7
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.4e-10 70.1 85 60.0
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 2.4e-10 70.1 215 35.8
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.1e-10 69.7 77 64.9
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.1e-10 69.7 83 63.9
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 3.1e-10 69.7 52 63.5
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 5.3e-10 68.9 78 62.8
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 6.9e-10 68.6 90 57.8
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.9e-10 68.6 83 60.2
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 6.9e-10 68.6 76 65.8
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 9.0e-10 68.2 77 63.6
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 9.0e-10 68.2 77 63.6
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 9.0e-10 68.2 77 64.9
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 2.0e-09 67.0 87 56.3
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 2.0e-09 67.0 87 59.8
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 3.4e-09 66.2 87 59.8
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.4e-09 66.2 46 69.6
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 7.6e-09 65.1 77 61.0
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 9.9e-09 64.7 83 59.0
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 1.3e-08 64.3 89 59.6
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 1.7e-08 63.9 78 41.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 2.2e-08 63.5 73 49.3
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 2.2e-08 63.5 77 49.4
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 2.9e-08 63.2 51 64.7
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.9e-08 63.2 57 56.1
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 2.9e-08 63.2 83 59.0
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 3.8e-08 62.8 64 50.0
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.8e-08 62.8 78 59.0
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.9e-08 62.4 60 51.7
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 6.4e-08 62.0 81 51.9
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 6.4e-08 62.0 81 51.9
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 6.4e-08 62.0 57 56.1
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.4e-08 62.0 57 56.1
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 6.4e-08 62.0 53 58.5
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 6.4e-08 62.0 76 65.8
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 8.4e-08 61.6 81 55.6
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 8.4e-08 61.6 87 57.5
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.4e-07 60.8 79 55.7
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.4e-07 60.8 57 54.4
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.4e-07 60.8 72 63.9
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.9e-07 60.5 84 58.3
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.9e-07 60.5 78 57.7
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 2.4e-07 60.1 81 58.0
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 2.4e-07 60.1 65 52.3
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 4.2e-07 59.3 84 57.1
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.2e-07 59.3 81 56.8
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 4.2e-07 59.3 83 45.8
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.2e-07 59.3 59 44.1
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 5.5e-07 58.9 80 55.0
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.2e-06 57.8 79 53.2
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.5e-06 56.2 61 44.3
Lsat_1_v5_gn_5_142981 Lactuca sativa HOM05D003238 ORTHO05D003571 3.5e-06 56.2 110 37.3
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.0e-06 55.5 86 54.7
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 6.0e-06 55.5 52 50.0


User provided reference genes

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