Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1971.8 1089 100.0
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1618.6 1094 80.6
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1612.4 1098 82.9
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1595.9 1095 76.0
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1595.1 1094 75.2
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1585.1 1078 78.4
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1581.6 1060 78.0
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1577.8 1088 77.2
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1577.8 1095 80.2
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1576.2 1096 78.2
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1575.8 1084 77.4
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1573.5 1090 78.3
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1572.8 1094 76.0
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1571.2 1091 78.4
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1570.8 1095 76.2
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1565.4 1098 78.6
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1564.7 1078 77.6
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1563.9 1105 77.6
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1563.1 1093 78.5
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1563.1 1095 77.8
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1562.4 1089 78.3
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1557.0 1091 78.6
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1556.6 1114 74.1
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1555.8 1074 78.8
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1553.9 1088 76.8
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1544.3 1089 77.8
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1543.5 1093 73.9
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1541.9 1094 76.4
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1540.4 1096 77.7
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1539.2 1075 75.5
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1533.9 1077 77.9
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1531.2 1096 76.6
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1530.4 1093 73.7
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1530.4 1093 73.7
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1522.3 1093 76.2
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1519.2 1059 76.7
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1518.4 1123 75.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1511.9 1097 74.7
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1510.7 1136 73.9
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1506.5 1096 75.5
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1505.7 1096 72.0
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1505.3 1093 75.4
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1503.8 1093 75.2
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1498.0 1115 72.7
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1494.6 868 84.7
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1490.7 1094 72.9
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1490.3 869 83.8
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1489.2 869 83.8
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1486.9 869 83.7
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1485.7 1096 72.9
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1482.2 1054 75.0
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1475.7 1123 74.4
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1472.6 1199 70.0
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1471.4 1084 71.2
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1470.7 1095 71.8
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1462.2 1097 73.6
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1458.7 1082 70.7
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1436.0 1072 73.6
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1434.9 1072 73.7
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1434.5 1074 71.1
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1431.8 1085 71.2
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1431.0 974 73.1
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1422.1 1097 71.0
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1418.3 1094 71.8
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1417.5 869 80.7
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1416.4 1097 70.4
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1403.3 1108 67.6
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1401.7 945 75.1
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1395.6 1085 67.9
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1391.3 1097 68.9
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1386.3 1095 73.9
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1383.2 945 72.9
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1382.9 945 73.3
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1382.1 1104 69.0
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1382.1 1072 68.7
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1380.5 976 73.2
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1379.0 1094 67.6
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1376.7 1142 66.8
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1368.2 1151 68.1
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1365.1 945 72.7
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1365.1 945 72.7
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1364.0 945 72.6
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1364.0 945 72.6
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1350.1 1117 66.4
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1347.8 1094 67.1
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1344.3 880 75.6
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1343.6 1094 66.8
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1342.4 1053 68.0
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1323.1 1025 69.4
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1307.4 1043 66.9
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1304.3 1204 60.7
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1303.5 1088 64.6
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1300.4 899 73.4
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1277.3 1095 66.9
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1260.4 877 71.4
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1259.2 1053 63.0
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1258.8 1253 56.7
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1193.3 876 66.1
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1173.7 1078 58.8
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1158.7 876 64.7
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1126.3 871 63.1
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 0.0e+00 1115.9 692 79.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 0.0e+00 1115.5 690 79.9
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 3.3e-302 1042.0 1092 56.1
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 3.7e-277 958.7 744 62.9
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 7.7e-275 951.0 635 76.5
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 1.3e-274 950.3 690 70.9
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 9.4e-273 944.1 546 83.9
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 4.1e-244 849.0 628 69.4
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.0e-189 668.3 570 60.2
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 6.7e-170 602.4 522 70.5
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 1.7e-160 571.2 445 64.9
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 4.8e-152 543.1 318 84.6
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.1e-124 452.2 450 55.6
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 4.0e-122 443.7 368 58.4
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 6.2e-115 419.9 414 63.0
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 2.9e-104 384.4 382 60.5
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 2.2e-96 358.2 233 76.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.0e-93 349.4 276 66.3
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 5.1e-93 347.1 230 74.3
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 2.5e-92 344.7 322 58.1
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.5e-89 335.5 1023 27.5
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 1.6e-83 315.5 198 80.3
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 1.3e-77 295.8 1024 25.5
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 5.9e-65 253.8 134 88.8
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 2.1e-62 245.4 190 64.7
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 7.4e-60 236.9 375 38.9
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.0e-52 212.2 144 69.4
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 3.3e-44 184.9 99 84.8
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.7e-43 181.4 107 84.1
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 7.0e-42 177.2 199 47.7
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 1.7e-40 172.6 243 47.3
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 3.8e-40 171.4 225 43.1
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 3.8e-40 171.4 100 79.0
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.9e-39 169.1 149 59.7
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 8.0e-38 163.7 108 73.1
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 5.2e-37 161.0 121 64.5
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.6e-36 158.7 237 41.8
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.6e-36 158.7 484 28.5
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 9.7e-36 156.8 89 82.0
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.4e-34 152.1 119 60.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 3.2e-31 141.7 150 54.7
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.1e-30 139.0 150 54.0
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.0e-29 135.2 93 74.2
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 8.8e-29 133.7 283 38.5
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.7e-27 129.4 86 77.9
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.7e-24 119.4 108 59.3
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.7e-24 119.4 108 59.3
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.7e-24 119.4 108 59.3
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.0e-21 108.2 79 63.3
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.2e-20 106.7 97 66.0
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.4e-18 99.0 60 76.7
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.2e-18 97.1 79 58.2
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-17 96.7 67 68.7
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-17 96.7 59 78.0
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.7e-17 95.5 65 67.7
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.5e-17 94.7 134 44.0
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.5e-17 94.7 65 67.7
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.0e-16 93.6 61 67.2
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 8.6e-16 90.5 47 97.9
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 5.6e-15 87.8 51 80.4
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 3.4e-12 78.6 77 53.2
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 7.5e-12 77.4 75 54.7
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 8.3e-11 73.9 77 50.6
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.1e-10 71.6 55 60.0
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 4.3e-07 61.6 72 44.4
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 4.3e-07 61.6 66 48.5
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 7.3e-07 60.8 37 73.0
Psat6g098400 Pisum sativum HOM05D003881 ORTHO05D004343 9.5e-07 60.5 63 49.2
PGSC0003DMG400019565 Solanum tuberosum HOM05D003881 ORTHO05D004343 9.5e-07 60.5 95 51.6
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 1.2e-06 60.1 50 54.0
Actinidia38474 Actinidia chinensis HOM05D003881 ORTHO05D004343 2.1e-06 59.3 47 66.0


User provided reference genes

Program Settings