Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 0.0e+00 1537.3 747 100.0
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 0.0e+00 1199.1 751 78.3
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1198.0 751 78.2
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1197.2 752 77.5
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1194.1 747 77.9
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 0.0e+00 1181.8 749 76.9
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 0.0e+00 1177.2 747 76.4
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 0.0e+00 1173.7 748 76.2
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1171.4 748 77.0
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1171.0 753 76.5
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 0.0e+00 1170.2 750 77.3
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 0.0e+00 1166.8 751 75.2
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 0.0e+00 1166.4 751 77.1
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1164.4 748 76.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1162.5 748 76.3
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 0.0e+00 1157.9 748 75.7
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1138.6 747 74.6
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1131.7 762 73.8
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1128.6 749 74.5
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 0.0e+00 1127.1 776 72.6
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 0.0e+00 1122.1 748 74.1
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1121.3 776 71.1
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1119.0 746 74.1
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1117.4 748 73.9
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 0.0e+00 1109.0 774 70.3
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1106.7 748 73.4
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 0.0e+00 1104.4 775 70.7
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 0.0e+00 1102.8 785 70.6
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1097.4 747 72.6
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1082.0 770 69.5
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1078.9 744 72.4
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 0.0e+00 1078.5 748 71.9
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 0.0e+00 1075.1 774 69.4
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 5.1e-312 1074.3 756 70.2
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 2.0e-311 1072.0 769 68.0
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.6e-311 1071.2 775 69.5
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 7.7e-311 1070.1 777 68.9
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.7e-310 1068.9 775 69.4
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.5e-309 1065.1 753 70.7
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.3e-309 1064.7 768 67.7
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 4.3e-309 1064.3 720 73.8
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 2.1e-308 1062.0 797 67.6
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 2.8e-308 1061.6 756 70.5
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 2.8e-308 1061.6 767 68.2
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.4e-307 1059.3 769 68.9
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 3.1e-307 1058.1 773 67.5
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 3.1e-307 1058.1 767 68.1
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 8.9e-307 1056.6 761 69.6
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 4.4e-306 1054.3 783 67.8
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 7.5e-306 1053.5 772 68.4
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 9.9e-306 1053.1 772 68.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.9e-305 1050.8 773 68.0
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 8.3e-305 1050.0 770 68.1
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.4e-304 1049.3 755 69.9
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 9.2e-304 1046.6 754 69.4
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 1.3e-302 1042.7 771 67.7
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.7e-302 1042.3 749 68.1
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 2.3e-302 1042.0 749 67.6
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.3e-302 1042.0 756 69.6
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 3.0e-302 1041.6 756 69.6
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 3.9e-302 1041.2 765 67.6
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 3.9e-302 1041.2 771 67.7
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 5.1e-302 1040.8 774 67.6
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 1.9e-301 1038.9 770 66.8
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.3e-301 1038.1 755 69.4
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 9.5e-301 1036.6 749 67.6
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.2e-300 1036.2 774 66.7
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 2.8e-300 1035.0 774 67.3
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 3.6e-300 1034.6 751 67.5
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.1e-299 1033.1 774 67.2
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.1e-299 1033.1 774 67.2
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.4e-299 1032.7 750 67.9
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 1.8e-299 1032.3 773 66.2
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 2.4e-299 1031.9 774 66.7
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 5.2e-299 1030.8 759 68.8
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 6.8e-299 1030.4 750 67.3
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 3.4e-298 1028.1 768 67.4
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.8e-298 1027.3 774 66.7
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 6.4e-297 1023.8 752 66.8
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 9.2e-296 1020.0 753 66.8
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 1.6e-295 1019.2 753 69.1
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 4.3e-293 1011.1 755 67.4
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.6e-292 1009.2 747 68.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 3.6e-292 1008.1 774 65.8
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 8.1e-292 1006.9 756 66.1
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 8.1e-292 1006.9 773 64.7
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 754 66.3
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.2e-287 993.0 774 63.0
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 3.9e-286 988.0 778 63.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 5.1e-286 987.6 773 63.5
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 9.6e-285 983.4 740 67.6
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 2.1e-284 982.2 770 64.0
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 3.6e-284 981.5 833 62.3
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.0e-282 975.7 772 63.1
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 5.8e-282 974.2 767 63.9
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.9e-280 969.1 768 63.0
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 7.1e-280 967.2 765 66.1
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 2.1e-279 965.7 776 62.0
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 3.5e-279 964.9 779 62.5
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 7.9e-279 963.8 775 63.2
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.3e-278 963.0 775 63.0
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.8e-278 962.6 775 61.8
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 8.7e-278 960.3 758 63.2
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.1e-277 959.9 770 63.1
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 1.5e-277 959.5 782 62.1
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 7.4e-277 957.2 776 62.2
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 1.6e-276 956.1 806 60.5
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.7e-276 954.9 767 62.7
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.1e-275 953.4 792 62.9
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 1.1e-275 953.4 766 64.0
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.8e-275 952.6 771 61.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 2.4e-275 952.2 772 62.0
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.0e-275 951.4 812 59.9
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 1.2e-274 949.9 773 61.7
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 2.0e-274 949.1 776 62.9
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 2.6e-274 948.7 775 61.9
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 3.2e-272 941.8 776 62.5
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 1.6e-271 939.5 765 61.0
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.5e-271 938.3 759 63.8
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 3.7e-268 928.3 780 61.8
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 1.8e-267 926.0 777 62.2
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 5.7e-261 904.4 754 62.2
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 2.2e-260 902.5 768 60.3
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.4e-259 899.8 753 62.3
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 5.3e-259 897.9 753 62.3
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 5.9e-258 894.4 682 68.5
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.3e-256 887.1 763 58.3
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 4.6e-255 884.8 705 64.0
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 5.3e-251 871.3 768 59.2
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 2.6e-250 869.0 771 58.1
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 2.6e-245 852.4 771 57.1
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 4.4e-245 851.7 762 58.9
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.3e-244 850.1 720 62.6
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 4.5e-242 841.6 768 57.7
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 7.2e-240 834.3 762 56.8
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 7.0e-235 817.8 763 55.0
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 3.5e-234 815.5 664 64.2
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.4e-211 739.6 737 53.7
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 1.1e-184 651.0 759 45.7
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 5.8e-181 638.6 740 45.9
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.7e-180 637.1 418 74.9
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 1.0e-177 627.9 421 72.2
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.1e-176 624.4 766 45.2
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 5.3e-174 615.5 761 45.5
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.2e-173 614.4 746 46.4
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 2.7e-170 603.2 772 44.0
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 3.9e-153 546.2 734 42.0
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 2.1e-151 540.4 387 66.9
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 2.1e-151 540.4 387 66.9
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 1.3e-143 514.6 278 87.1
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 2.8e-143 513.5 392 65.1
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 3.4e-133 479.9 563 45.3
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 9.1e-126 455.3 458 53.9
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 8.2e-119 432.2 253 79.4
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 8.5e-116 422.2 460 47.8
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 1.5e-96 358.2 753 34.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.6e-74 283.9 277 52.3
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 5.6e-67 260.0 770 27.9
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 5.8e-56 223.4 285 42.1
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.3e-50 205.7 185 55.1
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.1e-46 192.6 142 67.6
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 5.3e-41 173.7 149 61.7
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.0e-41 172.9 82 87.8
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.9e-30 138.7 65 89.2
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.8e-28 132.1 172 43.0
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.6e-24 118.2 142 42.3
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.0e-12 79.7 108 43.5
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.0e-12 79.7 174 33.9
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 1.3e-10 72.8 101 40.6
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 1.3e-10 72.8 84 48.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 1.1e-09 69.7 73 47.9


User provided reference genes

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