Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00687 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.9e-59 231.1 132 100.0
Eucgr.B00705 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.5e-31 139.8 130 67.7
Eucgr.C00683 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.6e-17 92.0 55 81.8
Eucgr.C00688 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.8e-16 89.7 66 71.2
Eucgr.C00694 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.8e-16 89.7 66 71.2
Eucgr.L02370 Eucalyptus grandis HOM05D000448 ORTHO05D000291 6.7e-16 87.8 55 80.0
Eucgr.C00550 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.5e-15 86.7 66 68.2
Eucgr.C00697 Eucalyptus grandis HOM05D000448 ORTHO05D000291 3.3e-15 85.5 64 71.9
Eucgr.C00680 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.4e-15 85.1 55 76.4
Eucgr.E02801 Eucalyptus grandis HOM05D000448 ORTHO05D000291 5.7e-15 84.7 65 67.7
Eucgr.E02805 Eucalyptus grandis HOM05D000448 ORTHO05D000291 5.7e-15 84.7 65 67.7
Eucgr.C00592 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.7e-15 84.0 66 68.2
Eucgr.C01885 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.3e-14 83.6 55 74.5
Eucgr.E02804 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.3e-14 83.6 65 66.2
Eucgr.C01889 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.7e-14 83.2 55 72.7
Eucgr.C00686 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.2e-14 82.8 55 76.4
Eucgr.G00181 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.8e-14 82.4 130 43.1
Eucgr.L03436 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.8e-14 81.6 55 72.7
Eucgr.L02802 Eucalyptus grandis HOM05D000448 ORTHO05D000291 6.3e-14 81.3 65 67.7
Eucgr.C00702 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.8e-13 79.7 52 76.9
Cpa.g.sc277.6 Carica papaya HOM05D000448 ORTHO05D000291 2.6e-12 75.9 153 41.8
Eucgr.G00200 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.5e-12 75.1 55 69.1
COL.COLO4_35174 Corchorus olitorius HOM05D000448 ORTHO05D000291 7.7e-12 74.3 54 64.8
Eucgr.C01650 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.0e-11 73.9 55 70.9
Eucgr.C01737 Eucalyptus grandis HOM05D000448 ORTHO05D000291 1.7e-11 73.2 72 58.3
Eucgr.B00907 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.9e-11 72.4 55 67.3
Gohir.D06G084166 Gossypium hirsutum HOM05D000448 ORTHO05D000291 5.0e-11 71.6 55 63.6
Eucgr.G00178 Eucalyptus grandis HOM05D000448 ORTHO05D000291 8.5e-11 70.9 55 65.5
Gohir.A06G085200 Gossypium hirsutum HOM05D000448 ORTHO05D000291 8.5e-11 70.9 55 61.8
Thecc.09G132900 Theobroma cacao HOM05D000448 ORTHO05D000291 8.5e-11 70.9 55 63.6
Thecc.09G133100 Theobroma cacao HOM05D000448 ORTHO05D000291 8.5e-11 70.9 55 63.6
Duzib168G1304 Durio zibethinus HOM05D000448 ORTHO05D000291 1.9e-10 69.7 55 60.0
Ciclev10008164m.g Citrus clementina HOM05D000448 ORTHO05D000291 2.5e-10 69.3 55 58.2
Atru.chr7.1898 Acer truncatum HOM05D000448 ORTHO05D000291 3.2e-10 68.9 55 56.4
Gohir.D06G084400 Gossypium hirsutum HOM05D000448 ORTHO05D000291 4.2e-10 68.6 55 60.0
Gorai.010G097700 Gossypium raimondii HOM05D000448 ORTHO05D000291 5.5e-10 68.2 55 61.8
Thecc.09G059800 Theobroma cacao HOM05D000448 ORTHO05D000291 5.5e-10 68.2 54 61.1
Cpa.g.sc277.5 Carica papaya HOM05D000448 ORTHO05D000291 7.2e-10 67.8 153 40.5
Duzib150G0465 Durio zibethinus HOM05D000448 ORTHO05D000291 7.2e-10 67.8 55 63.6
Duzib168G2236 Durio zibethinus HOM05D000448 ORTHO05D000291 9.4e-10 67.4 55 60.0
Duzib168G2346 Durio zibethinus HOM05D000448 ORTHO05D000291 9.4e-10 67.4 55 58.2
PGR031G3266 Punica granatum HOM05D000448 ORTHO05D000291 9.4e-10 67.4 72 51.4
PGR044G1390 Punica granatum HOM05D000448 ORTHO05D000291 9.4e-10 67.4 68 54.4
Duzib150G1064 Durio zibethinus HOM05D000448 ORTHO05D000291 1.2e-09 67.0 55 61.8
Duzib168G2221 Durio zibethinus HOM05D000448 ORTHO05D000291 1.2e-09 67.0 55 58.2
Gorai.010G097800 Gossypium raimondii HOM05D000448 ORTHO05D000291 1.2e-09 67.0 55 58.2
Atru.chr2.622 Acer truncatum HOM05D000448 ORTHO05D000291 2.7e-09 65.9 55 58.2
HanXRQChr12g0358821 Helianthus annuus HOM05D000448 ORTHO05D000291 2.7e-09 65.9 79 43.0
PGR031G0346 Punica granatum HOM05D000448 ORTHO05D000291 2.7e-09 65.9 77 46.8
PGR031G2901 Punica granatum HOM05D000448 ORTHO05D000291 3.6e-09 65.5 72 50.0
Eucgr.C00701 Eucalyptus grandis HOM05D000448 ORTHO05D000291 4.7e-09 65.1 39 82.1
Migut.C00513 Erythranthe guttata HOM05D000448 ORTHO05D000291 6.1e-09 64.7 89 39.3
Sabra06G0172800 Salix brachista HOM05D000448 ORTHO05D000291 6.1e-09 64.7 55 58.2
Potri.006G223800 Populus trichocarpa HOM05D000448 ORTHO05D000291 8.0e-09 64.3 55 58.2
TAR636G1885 Trochodendron aralioides HOM05D000448 ORTHO05D000291 8.0e-09 64.3 55 58.2
Cc00_g14740 Coffea canephora HOM05D000448 ORTHO05D000291 1.4e-08 63.5 79 44.3
Cc08_g01410 Coffea canephora HOM05D000448 ORTHO05D000291 1.4e-08 63.5 79 40.5
Oeu047503.1 Olea europaea HOM05D000448 ORTHO05D000291 1.8e-08 63.2 69 46.4
TAR628G1068 Trochodendron aralioides HOM05D000448 ORTHO05D000291 1.8e-08 63.2 55 56.4
HanXRQChr12g0358831 Helianthus annuus HOM05D000448 ORTHO05D000291 2.3e-08 62.8 79 41.8
Oeu050630.1 Olea europaea HOM05D000448 ORTHO05D000291 2.3e-08 62.8 69 44.9
Hma1.2p1_0231F.1_g097520 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 3.0e-08 62.4 55 54.5
Hma1.2p1_2960F.1_g330845 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 3.0e-08 62.4 55 54.5
Ciclev10008188m.g Citrus clementina HOM05D000448 ORTHO05D000291 4.0e-08 62.0 55 56.4
Ciclev10009252m.g Citrus clementina HOM05D000448 ORTHO05D000291 5.2e-08 61.6 55 56.4
FvH4_2g31330 Fragaria vesca HOM05D000448 ORTHO05D000291 5.2e-08 61.6 69 47.8
Oeu034184.1 Olea europaea HOM05D000448 ORTHO05D000291 5.2e-08 61.6 69 44.9
Peaxi162Scf00565g00821 Petunia axillaris HOM05D000448 ORTHO05D000291 5.2e-08 61.6 54 55.6
PGR044G2433 Punica granatum HOM05D000448 ORTHO05D000291 5.2e-08 61.6 68 50.0
RcHm_v2.0_Chr6g0311491 Rosa chinensis HOM05D000448 ORTHO05D000291 5.2e-08 61.6 69 47.8
Cc11_g03950 Coffea canephora HOM05D000448 ORTHO05D000291 8.8e-08 60.8 78 42.3
FAN15G2979 Fragaria x ananassa HOM05D000448 ORTHO05D000291 8.8e-08 60.8 65 49.2
PGR044G0504 Punica granatum HOM05D000448 ORTHO05D000291 8.8e-08 60.8 55 56.4
PGR044G0759 Punica granatum HOM05D000448 ORTHO05D000291 8.8e-08 60.8 55 56.4
COL.COLO4_35169 Corchorus olitorius HOM05D000448 ORTHO05D000291 1.2e-07 60.5 55 52.7
CAN.G712.1 Capsicum annuum HOM05D000448 ORTHO05D000291 1.5e-07 60.1 77 44.2
ClCG00G004190 Citrullus lanatus HOM05D000448 ORTHO05D000291 1.5e-07 60.1 55 50.9
ClCG08G009940 Citrullus lanatus HOM05D000448 ORTHO05D000291 1.5e-07 60.1 55 50.9
ECA248G1701 Erigeron canadensis HOM05D000448 ORTHO05D000291 1.5e-07 60.1 153 27.5
FAN24G3355 Fragaria x ananassa HOM05D000448 ORTHO05D000291 1.5e-07 60.1 69 47.8
Oeu030739.1 Olea europaea HOM05D000448 ORTHO05D000291 1.5e-07 60.1 69 42.0
ECA248G3007 Erigeron canadensis HOM05D000448 ORTHO05D000291 2.6e-07 59.3 67 44.8
Hma1.2p1_0231F.1_g097610 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 2.6e-07 59.3 75 44.0
Nitab4.5_0000286g0030 Nicotiana tabacum HOM05D000448 ORTHO05D000291 2.6e-07 59.3 54 53.7
Prupe.7G203800 Prunus persica HOM05D000448 ORTHO05D000291 2.6e-07 59.3 67 47.8
Sc21g0003040 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.6e-07 59.3 69 46.4
COL.COLO4_35167 Corchorus olitorius HOM05D000448 ORTHO05D000291 3.3e-07 58.9 55 50.9
Peaxi162Scf00565g00827 Petunia axillaris HOM05D000448 ORTHO05D000291 3.3e-07 58.9 53 54.7
TAR121G0002 Trochodendron aralioides HOM05D000448 ORTHO05D000291 3.3e-07 58.9 52 55.8
TAR383G0566 Trochodendron aralioides HOM05D000448 ORTHO05D000313 3.3e-07 58.9 55 54.5
MSTRG.12046 Avicennia marina HOM05D000448 ORTHO05D000291 4.4e-07 58.5 55 50.9
CAN.G68.15 Capsicum annuum HOM05D000448 ORTHO05D000291 4.4e-07 58.5 77 42.9
Cc00_g19340 Coffea canephora HOM05D000448 ORTHO05D000291 4.4e-07 58.5 67 49.3
FvH4_2g31310 Fragaria vesca HOM05D000448 ORTHO05D000291 4.4e-07 58.5 69 46.4
Nn7g36771 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.4e-07 58.5 79 39.2
QL02p061270 Quercus lobata HOM05D000448 ORTHO05D000291 4.4e-07 58.5 77 44.2
QL02p061382 Quercus lobata HOM05D000448 ORTHO05D000291 4.4e-07 58.5 77 44.2
SGA_v2.0_scaffold64G21858 Striga asiatica HOM05D000448 ORTHO05D000291 4.4e-07 58.5 78 39.7
CANSAT25G2827 Cannabis sativa HOM05D000448 ORTHO05D000291 5.7e-07 58.2 56 55.4
AUR62008891 Chenopodium quinoa HOM05D000448 ORTHO05D000291 5.7e-07 58.2 66 48.5
AUR62031816 Chenopodium quinoa HOM05D000448 ORTHO05D000291 5.7e-07 58.2 66 48.5
PGSC0003DMG400013763 Solanum tuberosum HOM05D000448 ORTHO05D000291 5.7e-07 58.2 53 50.9
Thecc.09G081800 Theobroma cacao HOM05D000448 ORTHO05D000291 5.7e-07 58.2 69 43.5
CANSAT25G3158 Cannabis sativa HOM05D000448 ORTHO05D000291 7.5e-07 57.8 59 54.2
CsaV3_6G032040 Cucumis sativus L. HOM05D000448 ORTHO05D000291 7.5e-07 57.8 53 60.4
Solyc08g062330.3 Solanum lycopersicum HOM05D000448 ORTHO05D000291 7.5e-07 57.8 54 50.0
Sopen08g017860 Solanum pennellii HOM05D000448 ORTHO05D000291 7.5e-07 57.8 54 50.0
Thecc.09G133200 Theobroma cacao HOM05D000448 ORTHO05D000291 7.5e-07 57.8 76 40.8
TAR311G0004 Trochodendron aralioides HOM05D000448 ORTHO05D000291 7.5e-07 57.8 55 50.9
ECA234G0709 Erigeron canadensis HOM05D000448 ORTHO05D000291 9.7e-07 57.4 54 50.0
Eucgr.L00448 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.7e-07 57.4 148 39.9
QL02p061422 Quercus lobata HOM05D000448 ORTHO05D000291 9.7e-07 57.4 77 42.9
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 9.7e-07 57.4 65 50.8
Actinidia38444 Actinidia chinensis HOM05D000448 ORTHO05D000291 1.3e-06 57.0 53 52.8
Ciclev10003092m.g Citrus clementina HOM05D000448 ORTHO05D000291 1.3e-06 57.0 67 49.3
MELO3C011477.2 Cucumis melo HOM05D000448 ORTHO05D000291 1.3e-06 57.0 53 56.6
FvH4_1g08140 Fragaria vesca HOM05D000448 ORTHO05D000291 1.3e-06 57.0 55 49.1
FAN19G2762 Fragaria x ananassa HOM05D000544 ORTHO05D000291 1.3e-06 57.0 55 49.1
FAN23G0378 Fragaria x ananassa HOM05D000544 ORTHO05D000291 1.3e-06 57.0 55 49.1
Nn6g35571 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.3e-06 57.0 54 51.9
Potri.006G223700 Populus trichocarpa HOM05D000448 ORTHO05D000291 1.3e-06 57.0 55 54.5
Sc10g0008820 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.3e-06 57.0 56 51.8
Sc21g0003050 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.3e-06 57.0 69 42.0
CSS0002364 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.7e-06 56.6 79 39.2
CSS0023530 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 1.7e-06 56.6 79 39.2
CANSAT11G0836 Cannabis sativa HOM05D000448 ORTHO05D000291 1.7e-06 56.6 73 41.1
ECA234G0126 Erigeron canadensis HOM05D000448 ORTHO05D000291 1.7e-06 56.6 54 48.1
Migut.A00096 Erythranthe guttata HOM05D000448 ORTHO05D000291 1.7e-06 56.6 55 47.3
Hma1.2p1_0732F.1_g210020 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 1.7e-06 56.6 55 52.7
Lsat_1_v5_gn_5_78720 Lactuca sativa HOM05D000448 ORTHO05D000291 1.7e-06 56.6 55 49.1
MBI11_g10514_MAGBIO Magnolia biondii HOM05D000448 ORTHO05D000291 1.7e-06 56.6 75 37.3
PSO210G7802 Papaver somniferum HOM05D000448 ORTHO05D000291 1.7e-06 56.6 69 43.5
Sc09g0009400 Simmondsia chinensis HOM05D000448 ORTHO05D000291 1.7e-06 56.6 53 56.6
CSS0044549 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.2e-06 56.2 79 39.2
CiPaw.04G146800 Carya illinoinensis HOM05D000448 ORTHO05D000291 2.2e-06 56.2 69 47.8
HanXRQChr02g0058091 Helianthus annuus HOM05D000448 ORTHO05D000291 2.2e-06 56.2 152 27.0
PGR142G3845 Punica granatum HOM05D000448 ORTHO05D000291 2.2e-06 56.2 63 49.2
RcHm_v2.0_Chr3g0490431 Rosa chinensis HOM05D000448 ORTHO05D000291 2.2e-06 56.2 75 40.0
TAR501G0001 Trochodendron aralioides HOM05D000448 ORTHO05D000291 2.2e-06 56.2 52 53.8
GSVIVG01015126001 Vitis vinifera HOM05D000448 ORTHO05D000291 2.2e-06 56.2 53 50.9
Actinidia03310 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.8e-06 55.8 154 36.4
Actinidia38446 Actinidia chinensis HOM05D000448 ORTHO05D000291 2.8e-06 55.8 53 50.9
CSS0025223 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 2.8e-06 55.8 79 39.2
MELO3C011476.2 Cucumis melo HOM05D000448 ORTHO05D000291 2.8e-06 55.8 53 56.6
Lsat_1_v5_gn_5_30860 Lactuca sativa HOM05D000448 ORTHO05D000291 2.8e-06 55.8 67 47.8
Oeu010820.1 Olea europaea HOM05D000448 ORTHO05D000291 2.8e-06 55.8 70 45.7
Sc09g0009380 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.8e-06 55.8 53 56.6
Actinidia25224 Actinidia chinensis HOM05D000448 ORTHO05D000291 3.7e-06 55.5 67 46.3
MSTRG.10528 Avicennia marina HOM05D000448 ORTHO05D000291 3.7e-06 55.5 55 47.3
CANSAT25G2897 Cannabis sativa HOM05D000448 ORTHO05D000291 3.7e-06 55.5 54 55.6
Duzib150G0219 Durio zibethinus HOM05D000448 ORTHO05D000291 3.7e-06 55.5 69 42.0
Migut.A00933 Erythranthe guttata HOM05D000448 ORTHO05D000291 3.7e-06 55.5 53 50.9
Gorai.010G061300 Gossypium raimondii HOM05D000448 ORTHO05D000291 3.7e-06 55.5 84 40.5
Lsat_1_v5_gn_5_29481 Lactuca sativa HOM05D000448 ORTHO05D000291 3.7e-06 55.5 79 39.2
Lsat_1_v5_gn_5_30600 Lactuca sativa HOM05D000448 ORTHO05D000291 3.7e-06 55.5 54 50.0
Peaxi162Scf00565g00716 Petunia axillaris HOM05D000448 ORTHO05D000291 3.7e-06 55.5 54 48.1
Peaxi162Scf00565g00719 Petunia axillaris HOM05D000448 ORTHO05D000291 3.7e-06 55.5 54 48.1
Peaxi162Scf01938g00005 Petunia axillaris HOM05D000448 ORTHO05D000291 3.7e-06 55.5 54 48.1
Sc06g0006700 Simmondsia chinensis HOM05D000448 ORTHO05D000291 3.7e-06 55.5 70 47.1
CSS0013072 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 4.8e-06 55.1 79 40.5
CSS0045842 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 4.8e-06 55.1 79 40.5
CANSAT56G0856 Cannabis sativa HOM05D000448 ORTHO05D000291 4.8e-06 55.1 67 47.8
Ciclev10003826m.g Citrus clementina HOM05D000448 ORTHO05D000291 4.8e-06 55.1 75 42.7
Migut.I00414 Erythranthe guttata HOM05D000448 ORTHO05D000291 4.8e-06 55.1 55 47.3
Nn6g35572 Nelumbo nucifera HOM05D000448 ORTHO05D000291 4.8e-06 55.1 67 47.8
Sc06g0006680 Simmondsia chinensis HOM05D000448 ORTHO05D000291 4.8e-06 55.1 70 47.1
Sopen08g017880 Solanum pennellii HOM05D000448 ORTHO05D000291 4.8e-06 55.1 52 50.0
Actinidia25703 Actinidia chinensis HOM05D000448 ORTHO05D000291 6.3e-06 54.7 51 51.0
MSTRG.12045 Avicennia marina HOM05D000448 ORTHO05D000291 6.3e-06 54.7 54 53.7
CSS0028482 Camellia sinensis var. sinensis HOM05D000448 ORTHO05D000291 6.3e-06 54.7 75 40.0
Migut.L01539 Erythranthe guttata HOM05D000448 ORTHO05D000291 6.3e-06 54.7 52 53.8
FAN28G0857 Fragaria x ananassa HOM05D000448 ORTHO05D000291 6.3e-06 54.7 55 47.3
Oeu000707.1 Olea europaea HOM05D000448 ORTHO05D000291 6.3e-06 54.7 69 40.6
Oeu030741.1 Olea europaea HOM05D000448 ORTHO05D000291 6.3e-06 54.7 67 44.8
RcHm_v2.0_Chr2g0094191 Rosa chinensis HOM05D000448 ORTHO05D000291 6.3e-06 54.7 55 45.5
MSTRG.12047 Avicennia marina HOM05D000448 ORTHO05D000291 8.2e-06 54.3 74 43.2
Nn1g05267 Nelumbo nucifera HOM05D000448 ORTHO05D000291 8.2e-06 54.3 65 44.6
Nn4g25436 Nelumbo nucifera HOM05D000448 ORTHO05D000291 8.2e-06 54.3 54 48.1
Oeu047500.1 Olea europaea HOM05D000448 ORTHO05D000291 8.2e-06 54.3 67 44.8
RcHm_v2.0_Chr2g0094201 Rosa chinensis HOM05D000448 ORTHO05D000291 8.2e-06 54.3 54 46.3
Sc06g0006990 Simmondsia chinensis HOM05D000448 ORTHO05D000291 8.2e-06 54.3 65 44.6
TAR626G0212 Trochodendron aralioides HOM05D003596 ORTHO05D004256 8.2e-06 54.3 53 49.1
GSVIVG01015141001 Vitis vinifera HOM05D000448 ORTHO05D000291 8.2e-06 54.3 51 52.9


User provided reference genes

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