Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.5e-107 392.1 200 100.0
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 5.7e-91 337.8 203 84.2
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 3.1e-89 332.0 199 82.9
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 5.5e-86 321.2 203 80.3
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 1.2e-85 320.1 203 81.3
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.6e-85 319.7 203 81.3
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.6e-85 319.7 199 82.9
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 2.1e-85 319.3 203 79.3
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 2.7e-85 318.9 203 79.3
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.6e-85 318.5 203 78.8
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 3.6e-85 318.5 203 77.8
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 1.3e-84 316.6 203 80.3
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.8e-84 316.2 203 80.3
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 3.0e-84 315.5 203 80.3
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.0e-84 315.5 203 79.8
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.0e-84 315.5 203 79.8
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 8.7e-84 313.9 203 80.3
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.5e-83 313.2 203 77.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.5e-83 313.2 200 79.0
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.9e-83 312.8 203 78.3
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.9e-83 312.8 203 77.8
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 1.9e-83 312.8 203 79.3
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.9e-83 312.8 203 78.3
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 2.5e-83 312.4 203 79.8
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 5.7e-83 311.2 199 78.9
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 7.4e-83 310.8 203 79.3
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 7.4e-83 310.8 200 77.5
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 9.7e-83 310.5 203 79.8
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 9.7e-83 310.5 203 78.8
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.2e-82 309.3 203 76.8
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.2e-82 309.3 200 80.0
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.2e-82 309.3 199 77.9
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 3.7e-82 308.5 203 77.8
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.7e-82 308.5 200 79.5
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 3.7e-82 308.5 203 77.8
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 4.8e-82 308.1 203 75.9
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 4.8e-82 308.1 199 80.9
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 4.8e-82 308.1 203 78.3
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 6.3e-82 307.8 199 79.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 6.3e-82 307.8 199 80.9
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 6.3e-82 307.8 203 78.3
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 8.2e-82 307.4 203 78.8
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.8e-81 306.2 203 75.9
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.1e-81 305.4 200 78.0
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 4.1e-81 305.1 203 77.8
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 5.3e-81 304.7 203 77.3
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.2e-80 303.5 199 75.9
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 78.9
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 2.0e-80 302.8 200 73.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 2.6e-80 302.4 203 75.9
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 2.6e-80 302.4 203 76.4
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 3.4e-80 302.0 203 76.8
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 3.4e-80 302.0 199 77.9
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 5.9e-80 301.2 203 75.9
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.7e-80 300.8 203 75.9
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 7.7e-80 300.8 203 76.4
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 7.7e-80 300.8 203 76.8
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.0e-79 300.4 201 75.6
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.0e-79 300.4 203 73.4
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 1.3e-79 300.1 199 77.9
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.3e-79 300.1 203 73.4
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.3e-79 300.1 203 76.4
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.3e-79 300.1 203 76.4
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.7e-79 299.7 200 78.5
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 2.2e-79 299.3 199 75.9
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 2.2e-79 299.3 203 74.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 2.9e-79 298.9 199 77.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 2.9e-79 298.9 199 77.9
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.9e-79 298.9 203 75.9
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 5.0e-79 298.1 199 76.9
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 5.0e-79 298.1 199 76.9
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 5.0e-79 298.1 203 73.4
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 8.5e-79 297.4 199 77.4
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 8.5e-79 297.4 199 75.9
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 1.1e-78 297.0 203 74.4
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.4e-78 296.6 199 76.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-78 296.2 200 76.0
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.9e-78 296.2 206 73.8
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 2.5e-78 295.8 202 73.3
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.5e-78 295.8 203 72.9
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 3.2e-78 295.4 202 73.3
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 4.2e-78 295.0 199 75.9
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 4.2e-78 295.0 205 73.7
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 5.5e-78 294.7 204 73.0
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 7.2e-78 294.3 192 78.6
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 7.2e-78 294.3 203 73.4
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 9.4e-78 293.9 203 72.9
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.2e-77 293.5 203 73.9
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 1.6e-77 293.1 203 74.4
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.1e-77 292.7 211 73.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.7e-77 292.4 203 73.4
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 3.6e-77 292.0 203 73.4
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.6e-77 291.6 203 72.4
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.6e-77 291.6 210 70.0
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.1e-77 291.2 215 72.1
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.8e-76 289.7 191 77.0
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.1e-76 288.1 226 66.4
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 5.1e-76 288.1 203 71.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 6.7e-76 287.7 205 71.2
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 6.7e-76 287.7 203 70.9
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 8.8e-76 287.3 200 75.5
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 1.1e-75 287.0 197 72.1
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.1e-75 287.0 185 80.0
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 2.0e-75 286.2 203 70.9
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 4.4e-75 285.0 203 70.4
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 4.4e-75 285.0 199 73.9
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 1.3e-74 283.5 203 71.4
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.3e-74 283.5 197 70.1
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.7e-74 283.1 200 72.0
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 1.7e-74 283.1 225 68.9
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 1.7e-74 283.1 219 66.7
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 4.8e-74 281.6 200 72.0
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 8.2e-74 280.8 199 72.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.4e-73 280.0 219 66.7
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 2.4e-73 279.3 184 77.7
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 5.3e-73 278.1 198 69.2
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 6.9e-73 277.7 191 75.9
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 6.9e-73 277.7 201 71.1
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 2.6e-72 275.8 201 69.7
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 7.7e-72 274.2 203 70.0
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.3e-71 273.5 196 69.9
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 1.3e-71 273.5 203 70.9
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.2e-71 272.7 199 72.4
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 2.9e-71 272.3 185 75.7
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.1e-70 270.4 196 68.9
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 1.1e-70 270.4 252 58.7
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 2.5e-70 269.2 204 69.6
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 4.2e-70 268.5 215 68.4
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.6e-69 266.5 184 75.5
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.6e-67 259.2 203 67.5
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 9.7e-67 257.3 202 65.8
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 1.7e-66 256.5 188 66.0
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 6.3e-66 254.6 194 67.5
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 6.3e-66 254.6 203 67.5
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 1.8e-65 253.1 224 61.6
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 7.0e-65 251.1 183 71.0
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.6e-64 249.2 189 63.5
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 6.5e-63 244.6 181 65.7
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 8.5e-63 244.2 199 63.8
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 1.2e-61 240.4 233 59.7
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 7.0e-57 224.6 184 64.7
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 5.9e-56 221.5 200 59.5
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 8.5e-55 217.6 156 75.0
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 7.2e-54 214.5 203 59.6
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.7e-47 193.4 126 77.0
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.9e-46 189.9 120 78.3
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.0e-44 184.1 192 56.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 4.5e-40 168.7 99 84.8
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 5.0e-39 165.2 94 87.2
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 1.9e-38 163.3 192 53.6
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 1.9e-38 163.3 103 79.6
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 3.7e-34 149.1 106 70.8
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 6.6e-31 138.3 93 76.3
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.6e-29 133.7 100 71.0
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 3.4e-27 125.9 203 43.8
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.7e-26 122.5 66 86.4
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 4.9e-26 122.1 80 75.0
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 2.4e-25 119.8 71 74.6
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 4.3e-22 109.0 99 61.6
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 6.2e-21 105.1 201 36.3
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 8.1e-21 104.8 127 47.2
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.5e-19 100.5 94 60.6
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 8.3e-18 94.7 94 58.5
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 2.1e-16 90.1 80 61.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 5.1e-15 85.5 69 66.7
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.3e-14 82.8 67 62.7
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-13 80.5 51 74.5
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 2.1e-13 80.1 53 73.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 2.1e-13 80.1 70 57.1
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.0e-11 73.6 173 35.3
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 2.9e-10 69.7 64 60.9
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.3e-07 60.8 69 50.7


User provided reference genes

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