Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 2.5e-123 445.7 260 100.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 2.8e-58 229.6 264 51.1
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.5e-56 223.8 261 62.5
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.5e-56 223.8 256 54.3
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 5.9e-56 221.9 263 51.3
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 1.0e-55 221.1 254 55.1
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.7e-55 220.3 265 54.3
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 5.0e-55 218.8 256 53.5
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.1e-54 217.6 262 51.5
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 3.2e-54 216.1 260 53.8
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.2e-53 214.2 256 54.3
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.2e-53 214.2 260 55.4
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.7e-53 213.0 258 54.7
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 2.7e-53 213.0 253 50.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 4.7e-53 212.2 261 51.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 4.7e-53 212.2 251 51.4
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.1e-53 211.8 250 54.8
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 6.1e-53 211.8 253 55.3
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 7.9e-53 211.5 253 51.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.0e-52 211.1 258 50.0
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.0e-52 211.1 258 55.8
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 1.4e-52 210.7 261 56.7
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.4e-52 210.7 255 54.5
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.8e-52 210.3 281 51.2
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 8.8e-52 208.0 253 50.6
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.0e-51 206.8 261 55.2
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.3e-50 204.1 260 49.6
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.3e-50 204.1 258 51.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 1.7e-50 203.8 259 52.5
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 2.8e-50 203.0 260 48.8
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 4.8e-50 202.2 254 49.6
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.2e-50 201.4 254 49.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.1e-49 201.1 285 49.8
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 1.8e-49 200.3 167 64.1
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 4.1e-49 199.1 255 47.1
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 7.0e-49 198.4 257 54.5
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 9.1e-49 198.0 264 52.3
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.6e-48 197.2 270 50.0
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.6e-48 197.2 257 46.7
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.6e-48 197.2 264 51.9
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.0e-48 196.8 252 48.4
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.6e-48 196.4 176 58.0
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 3.5e-48 196.1 262 48.1
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 3.5e-48 196.1 176 59.1
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 4.5e-48 195.7 264 48.1
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.5e-48 195.7 262 53.8
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.9e-48 195.3 264 51.1
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 5.9e-48 195.3 256 51.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 7.7e-48 194.9 257 54.9
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 7.7e-48 194.9 264 51.5
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 7.7e-48 194.9 253 48.6
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.0e-47 194.5 261 53.6
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.7e-47 193.7 255 51.4
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.7e-47 193.7 264 51.9
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 2.2e-47 193.4 254 53.5
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 3.8e-47 192.6 253 49.0
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 3.8e-47 192.6 253 49.0
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 6.5e-47 191.8 252 47.6
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 8.5e-47 191.4 259 49.4
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.5e-46 190.7 269 49.8
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.5e-46 190.7 253 49.4
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.9e-46 190.3 162 61.7
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.5e-46 189.9 268 45.1
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 2.5e-46 189.9 269 50.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.2e-46 189.5 252 48.8
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 7.2e-46 188.3 255 49.4
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 7.2e-46 188.3 270 49.3
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 9.4e-46 188.0 262 47.7
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 9.4e-46 188.0 259 44.4
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.2e-45 187.6 260 50.4
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.2e-45 187.6 265 44.9
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.6e-45 187.2 253 50.2
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.1e-45 186.8 259 51.0
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.7e-45 186.4 185 56.8
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.7e-45 186.4 259 48.6
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 3.6e-45 186.0 263 51.7
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 8.0e-45 184.9 268 51.9
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.0e-44 184.5 258 51.2
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.8e-44 183.7 259 44.8
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.8e-44 183.7 256 49.2
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.8e-44 183.7 261 46.7
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 2.3e-44 183.3 222 54.5
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.2e-43 181.0 259 49.8
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.2e-43 181.0 262 45.8
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.0e-43 180.3 255 45.1
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 5.7e-43 178.7 254 46.5
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 5.7e-43 178.7 259 48.6
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 5.7e-43 178.7 259 48.6
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 5.7e-43 178.7 253 48.6
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 9.7e-43 177.9 251 50.2
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 2.2e-42 176.8 258 51.9
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.2e-42 176.8 322 41.0
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 2.2e-42 176.8 269 46.1
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.2e-42 176.8 252 48.0
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 2.8e-42 176.4 260 46.5
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 3.7e-42 176.0 282 46.8
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 4.8e-42 175.6 256 50.0
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 4.8e-42 175.6 249 45.8
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.3e-42 175.3 265 47.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 8.2e-42 174.9 241 47.7
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 8.2e-42 174.9 256 45.7
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.1e-41 174.5 253 42.3
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.4e-41 174.1 285 43.9
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 3.1e-41 172.9 251 42.6
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 7.0e-41 171.8 258 46.5
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 7.7e-40 168.3 176 59.1
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.7e-39 167.2 253 44.3
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 2.9e-39 166.4 256 45.3
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.1e-38 164.5 261 47.5
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.5e-38 164.1 257 42.0
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.6e-37 160.6 163 53.4
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.6e-37 160.6 249 42.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.7e-37 159.8 176 50.6
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.7e-37 159.8 169 50.3
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 6.1e-37 158.7 267 40.8
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.8e-36 157.1 153 56.9
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 2.3e-36 156.8 253 41.9
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 6.8e-36 155.2 169 50.3
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 8.8e-36 154.8 251 40.6
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 8.8e-36 154.8 281 47.7
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.0e-35 153.7 185 50.3
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 5.4e-33 145.6 176 46.6
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.1e-29 133.7 359 33.7
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.3e-28 130.2 89 68.5
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 8.3e-26 121.7 201 37.8
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 5.0e-23 112.5 231 33.8
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 2.5e-22 110.2 140 49.3
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.3e-22 109.8 132 47.7
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 3.6e-21 106.3 126 46.0
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 6.1e-21 105.5 254 40.2
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 1.0e-20 104.8 203 36.0
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 6.8e-20 102.1 247 34.0
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 3.4e-19 99.8 132 62.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 3.4e-19 99.8 254 36.2
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 7.5e-19 98.6 159 42.1
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 9.2e-17 91.7 149 41.6
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 9.2e-17 91.7 58 70.7
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.2e-16 91.3 154 37.0
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.5e-16 89.7 129 53.5
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.5e-14 84.3 273 28.2
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 9.5e-14 81.6 134 44.8
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 4.7e-13 79.3 126 38.1
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 4.7e-13 79.3 336 29.5
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.3e-10 71.2 49 67.3
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.7e-07 60.8 54 51.9
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.7e-07 60.8 54 51.9
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.1e-06 58.2 168 33.9
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 5.6e-06 55.8 90 32.2


User provided reference genes

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