Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 2.0e-97 359.0 167 100.0
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.4e-79 298.9 167 79.6
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 4.6e-78 294.7 167 78.4
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.9e-77 291.6 167 78.4
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 8.6e-77 290.4 167 77.8
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 1.5e-76 289.7 167 77.2
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 1.9e-76 289.3 167 76.6
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 3.3e-76 288.5 167 75.4
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 4.3e-76 288.1 167 76.6
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 7.3e-76 287.3 167 74.9
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 2.1e-75 285.8 166 75.3
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 4.7e-75 284.6 167 73.7
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 6.2e-75 284.3 167 76.0
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 1.4e-74 283.1 167 76.6
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 1.8e-74 282.7 167 75.4
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 1.8e-74 282.7 167 73.7
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 2.4e-74 282.3 167 76.0
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 3.1e-74 282.0 167 74.9
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 6.9e-74 280.8 167 74.9
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 9.0e-74 280.4 168 75.0
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 74.9
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 74.9
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 2.0e-73 279.3 167 74.9
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 4.4e-73 278.1 167 74.3
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 5.8e-73 277.7 167 73.1
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 5.8e-73 277.7 167 74.3
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 7.6e-73 277.3 167 73.7
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 3.8e-72 275.0 167 72.5
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.9e-72 274.6 167 73.1
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 8.4e-72 273.9 167 71.9
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 8.4e-72 273.9 167 73.1
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 1.9e-71 272.7 167 73.7
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 1.9e-71 272.7 167 73.7
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 1.9e-71 272.7 167 73.1
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 1.9e-71 272.7 167 73.1
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 3.2e-71 271.9 168 72.6
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 3.2e-71 271.9 168 72.6
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 5.4e-71 271.2 167 71.3
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 7.1e-71 270.8 167 73.1
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 7.1e-71 270.8 167 71.3
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 9.3e-71 270.4 168 72.0
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 9.3e-71 270.4 168 72.6
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 9.3e-71 270.4 168 72.6
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 9.3e-71 270.4 167 71.9
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.1e-70 269.2 168 72.0
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 2.7e-70 268.9 164 71.3
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.7e-70 268.9 168 71.4
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 3.5e-70 268.5 167 70.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 6.0e-70 267.7 168 72.0
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 6.0e-70 267.7 167 70.1
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 7.8e-70 267.3 168 74.4
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 7.8e-70 267.3 166 71.7
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 7.8e-70 267.3 168 71.4
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 69.5
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.0e-69 266.9 167 70.7
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 2.3e-69 265.8 167 70.7
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 3.0e-69 265.4 168 71.4
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 3.0e-69 265.4 166 72.3
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 3.9e-69 265.0 167 70.7
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 5.1e-69 264.6 168 71.4
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 6.6e-69 264.2 168 70.8
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 1.9e-68 262.7 167 68.9
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 2.5e-68 262.3 178 68.5
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 5.6e-68 261.2 189 64.6
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 5.6e-68 261.2 167 68.9
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 7.3e-68 260.8 164 68.3
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 2.8e-67 258.8 167 67.7
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 2.8e-67 258.8 167 69.5
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 6.2e-67 257.7 164 65.9
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 8.1e-67 257.3 164 69.5
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.1e-66 256.9 167 69.5
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 68.3
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 1.4e-66 256.5 167 68.3
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 1.8e-66 256.1 164 68.9
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.8e-66 256.1 167 67.7
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 2.4e-66 255.8 167 68.3
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.3e-66 254.6 166 68.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 9.0e-66 253.8 164 67.7
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 9.0e-66 253.8 174 66.7
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 2.0e-65 252.7 166 68.1
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.4e-65 251.9 166 67.5
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 5.8e-65 251.1 167 67.1
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 5.8e-65 251.1 167 67.1
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 7.6e-65 250.8 166 66.9
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.9e-63 246.1 203 58.6
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 2.4e-63 245.7 167 65.3
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 4.2e-63 245.0 167 65.9
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 7.1e-63 244.2 168 67.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 7.1e-63 244.2 179 63.7
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 7.1e-63 244.2 167 65.9
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 2.1e-62 242.7 167 68.9
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.7e-62 242.3 167 65.9
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 6.0e-62 241.1 219 53.0
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.1e-61 238.0 159 64.2
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 6.7e-61 237.7 167 61.7
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 2.5e-60 235.7 167 61.1
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 7.4e-60 234.2 189 56.1
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 1.1e-58 230.3 164 62.8
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 2.4e-58 229.2 167 59.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 2.4e-58 229.2 189 57.7
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 5.3e-58 228.0 167 59.3
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 4.2e-55 218.4 166 59.6
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 9.3e-55 217.2 166 58.4
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.2e-54 216.9 130 70.8
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 1.6e-54 216.5 134 70.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 1.6e-54 216.5 164 60.4
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 4.6e-54 214.9 127 72.4
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.3e-53 212.6 176 54.0
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 1.1e-52 210.3 134 69.4
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 9.6e-52 207.2 167 54.5
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.3e-51 206.8 166 57.2
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.8e-51 204.9 175 54.3
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.8e-50 203.0 126 68.3
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.7e-48 196.4 167 57.5
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 2.1e-46 189.5 167 54.5
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 6.7e-45 184.5 164 51.8
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 8.7e-45 184.1 177 50.3
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 2.5e-44 182.6 168 51.8
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 9.7e-44 180.6 128 63.3
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 4.8e-43 178.3 134 59.0
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 4.8e-43 178.3 165 49.7
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 4.8e-43 178.3 167 52.7
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 6.3e-43 177.9 133 59.4
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 4.1e-42 175.3 117 61.5
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 5.3e-42 174.9 164 51.2
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.9e-40 169.1 131 57.3
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 2.1e-38 162.9 97 75.3
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 2.1e-38 162.9 97 75.3
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 2.7e-38 162.5 164 48.2
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.0e-37 159.1 146 50.0
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 3.0e-37 159.1 130 57.7
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.9e-37 158.7 150 50.7
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 4.8e-35 151.8 98 67.3
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 8.2e-35 151.0 118 55.9
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 4.5e-33 145.2 127 48.8
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 1.8e-29 133.3 183 44.3
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 3.9e-29 132.1 97 63.9
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 1.4e-26 123.6 148 47.3
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 9.1e-26 120.9 164 39.6
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.6e-25 119.4 164 40.2
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 1.4e-23 113.6 80 62.5
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 2.1e-22 109.8 112 49.1
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.0e-21 107.5 127 39.4
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 5.7e-20 101.7 101 53.5
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 6.3e-19 98.2 89 53.9
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.5e-15 85.1 60 58.3
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.4e-15 84.3 64 56.2
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.4e-15 84.3 64 56.2
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.7e-14 82.8 65 55.4
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.7e-14 82.8 169 30.2
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.7e-14 82.0 118 35.6
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.0e-13 80.9 60 56.7
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 1.0e-13 80.9 71 53.5
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-12 77.4 64 53.1
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.6e-12 76.3 64 51.6
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 7.0e-10 68.2 46 65.2
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 1.2e-09 67.4 41 70.7
CAN.G1143.36 Capsicum annuum HOM05D001836 ORTHO05D001519 1.7e-08 63.5 54 51.9
BcaB05g24144 Brassica carinata HOM05D000010 ORTHO05D000063 2.9e-08 62.8 54 63.0
MCO11G136 Micromonas commoda HOM05D004267 ORTHO05D005267 3.8e-08 62.4 167 24.6
Hma1.2p1_2790F.1_g328600 Hydrangea macrophylla HOM05D005814 ORTHO05D006821 8.5e-08 61.2 88 39.8
Thecc.06G107200 Theobroma cacao HOM05D004267 ORTHO05D044750 2.5e-07 59.7 126 31.7
BcaB04g19156 Brassica carinata HOM05D004267 ORTHO05D096112 4.2e-07 58.9 39 71.8
Haze_00845 Corylus avellana HOM05D021883 ORTHO05D034098 2.7e-06 56.2 163 22.7


User provided reference genes

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