Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 7.6e-65 250.4 128 100.0
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 9.3e-55 216.9 128 83.6
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.1e-54 215.7 128 82.0
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.1e-54 215.7 127 84.3
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.7e-54 215.3 128 81.2
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 3.5e-54 214.9 127 85.0
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.5e-54 214.9 127 84.3
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 4.6e-54 214.5 128 82.0
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 4.6e-54 214.5 128 82.0
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 6.0e-54 214.2 128 82.0
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.0e-53 213.4 128 84.4
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.3e-53 213.0 127 82.7
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 2.3e-53 212.2 127 83.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 5.1e-53 211.1 126 82.5
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 1.1e-52 209.9 127 79.5
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.5e-52 209.5 128 82.8
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.9e-52 209.1 128 81.2
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.9e-52 209.1 127 81.9
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.5e-52 208.8 126 81.7
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 2.5e-52 208.8 126 82.5
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.5e-52 208.8 125 83.2
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 3.3e-52 208.4 121 86.0
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 3.3e-52 208.4 128 82.8
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.3e-52 208.0 126 81.7
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.3e-52 208.0 127 78.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 5.7e-52 207.6 128 80.5
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.7e-52 207.6 121 82.6
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 7.4e-52 207.2 120 84.2
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 9.6e-52 206.8 128 82.0
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 1.3e-51 206.5 120 84.2
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.3e-51 206.5 119 84.0
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.6e-51 206.1 127 78.7
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.1e-51 205.7 127 78.0
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.8e-51 204.5 126 80.2
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.8e-51 204.5 124 79.8
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.2e-51 204.1 119 82.4
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 6.2e-51 204.1 127 81.1
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 8.2e-51 203.8 124 79.8
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.1e-50 203.4 121 82.6
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.1e-50 203.4 117 87.2
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.4e-50 203.0 121 81.0
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.4e-50 203.0 127 78.0
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 1.8e-50 202.6 127 80.3
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.8e-50 202.6 117 86.3
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.4e-50 202.2 118 80.5
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.1e-50 201.8 119 79.8
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 5.3e-50 201.1 126 77.8
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 5.3e-50 201.1 128 80.5
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 6.9e-50 200.7 121 83.5
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 9.0e-50 200.3 120 83.3
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.5e-49 199.5 127 78.7
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.6e-49 198.7 128 79.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 2.6e-49 198.7 119 79.0
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.6e-49 198.7 121 80.2
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 3.4e-49 198.4 119 82.4
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 4.5e-49 198.0 121 77.7
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 7.6e-49 197.2 120 78.3
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.0e-48 196.8 121 76.9
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 76.9
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 76.9
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 76.9
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.7e-48 196.1 121 76.0
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.7e-48 196.1 121 76.0
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 2.2e-48 195.7 117 80.3
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 2.9e-48 195.3 121 79.3
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 3.8e-48 194.9 121 81.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.1e-47 193.4 120 75.8
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-47 193.4 121 80.2
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.1e-47 193.4 121 75.2
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.1e-47 193.4 121 75.2
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.1e-47 193.4 121 76.0
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.4e-47 193.0 116 79.3
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-47 193.0 121 79.3
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 2.5e-47 192.2 121 76.9
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 3.2e-47 191.8 121 79.3
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 4.2e-47 191.4 116 78.4
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 4.2e-47 191.4 121 76.9
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 9.3e-47 190.3 114 79.8
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 9.3e-47 190.3 120 79.2
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.2e-46 189.9 121 76.0
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.2e-46 189.9 124 75.0
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.1e-46 189.1 121 73.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 2.7e-46 188.7 119 76.5
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 3.5e-46 188.3 117 81.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 6.1e-46 187.6 127 72.4
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.1e-46 187.6 126 73.8
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.8e-45 186.0 120 72.5
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 2.3e-45 185.7 121 71.1
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 2.3e-45 185.7 121 71.1
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.3e-45 185.7 120 80.0
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.3e-45 185.7 120 72.5
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.3e-45 185.7 116 76.7
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 3.0e-45 185.3 120 76.7
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.9e-45 184.9 121 76.0
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 6.7e-45 184.1 121 75.2
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 6.7e-45 184.1 121 71.1
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 8.7e-45 183.7 105 84.8
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.5e-44 182.2 108 81.5
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.5e-44 182.2 108 83.3
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 3.3e-44 181.8 124 75.0
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 4.3e-44 181.4 121 69.4
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.8e-42 176.0 118 75.4
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 2.4e-42 175.6 123 69.9
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.7e-40 169.5 110 76.4
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.9e-40 168.7 119 71.4
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 3.8e-40 168.3 105 74.3
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.0e-40 167.9 99 86.9
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 6.5e-40 167.5 119 65.5
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 1.1e-39 166.8 98 82.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.9e-39 166.0 119 70.6
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.9e-39 166.0 98 81.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 7.2e-39 164.1 98 83.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 9.4e-39 163.7 122 66.4
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.0e-37 160.2 106 73.6
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 3.0e-37 158.7 121 67.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.1e-36 156.8 90 81.1
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 5.7e-36 154.5 117 65.8
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.2e-35 152.5 95 76.8
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 2.2e-35 152.5 122 65.6
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.7e-35 151.8 104 72.1
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.7e-35 151.8 120 66.7
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 6.3e-35 151.0 98 74.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 6.3e-35 151.0 98 74.5
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 6.3e-35 151.0 117 65.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.4e-34 149.8 125 63.2
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.1e-34 148.7 86 83.7
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 6.5e-32 141.0 93 75.3
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 8.5e-32 140.6 97 72.2
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.1e-31 140.2 126 62.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.4e-31 139.8 87 75.9
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 9.4e-31 137.1 84 76.2
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 2.7e-30 135.6 113 56.6
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 4.7e-30 134.8 80 77.5
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 7.9e-30 134.0 108 61.1
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 2.3e-29 132.5 88 69.3
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.9e-29 131.7 102 66.7
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 7.4e-28 127.5 112 52.7
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 2.2e-27 125.9 116 56.9
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 6.3e-27 124.4 120 48.3
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 8.2e-27 124.0 111 53.2
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-26 123.6 85 74.1
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 3.1e-26 122.1 114 50.9
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 5.3e-26 121.3 121 56.2
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 7.0e-26 120.9 117 48.7
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.5e-25 119.8 114 49.1
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 2.0e-25 119.4 115 53.9
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 7.7e-25 117.5 115 50.4
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.7e-24 116.3 128 46.9
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.7e-24 116.3 115 52.2
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.5e-23 112.5 102 52.9
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 3.6e-22 108.6 131 44.3
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.4e-21 106.7 75 77.3
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 4.4e-20 101.7 61 80.3
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 3.7e-19 98.6 63 71.4
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.7e-09 65.9 75 46.7
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.0e-08 63.9 54 50.0
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.2e-07 58.9 35 74.3
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 3.6e-06 55.5 111 33.3
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 6.1e-06 54.7 111 34.2
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 6.1e-06 54.7 111 30.6
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 8.0e-06 54.3 111 30.6


User provided reference genes

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