Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00555 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.7e-43 178.3 94 100.0
Eucgr.C00601 Eucalyptus grandis HOM05D007429 ORTHO05D003505 2.7e-43 178.3 94 100.0
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 4.3e-25 117.9 94 71.3
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 7.4e-25 117.1 94 72.3
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 2.1e-24 115.5 94 70.2
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 3.7e-24 114.8 94 67.0
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 6.2e-24 114.0 94 69.1
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 68.1
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.1e-23 113.2 94 70.2
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 2.4e-23 112.1 96 67.7
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 3.1e-23 111.7 96 69.8
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 66.0
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 4.0e-23 111.3 94 66.0
Cfa013372 Carpinus fangiana HOM05D007429 ORTHO05D003505 5.3e-23 110.9 96 66.7
Actinidia13337 Actinidia chinensis HOM05D007429 ORTHO05D003505 2.0e-22 109.0 96 66.7
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 2.0e-22 109.0 94 63.8
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 7.6e-22 107.1 94 66.0
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.0e-21 106.7 94 61.7
Dinv27908 Davidia involucrata HOM05D007429 ORTHO05D003505 1.0e-21 106.7 94 63.8
Manes.16G075000 Manihot esculenta HOM05D007429 ORTHO05D003505 1.0e-21 106.7 95 68.4
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.0e-21 106.7 94 67.0
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 1.3e-21 106.3 94 63.8
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 1.3e-21 106.3 94 63.8
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 63.8
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 68.1
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.7e-21 105.9 94 69.1
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 2.9e-21 105.1 94 61.7
Lsat_1_v5_gn_6_22640 Lactuca sativa HOM05D007429 ORTHO05D003505 2.9e-21 105.1 94 63.8
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 3.8e-21 104.8 94 67.0
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 6.5e-21 104.0 94 67.0
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 8.4e-21 103.6 95 65.3
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 1.1e-20 103.2 94 61.7
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 1.1e-20 103.2 94 61.7
Glyma.06G086300 Glycine max HOM05D007429 ORTHO05D003505 1.1e-20 103.2 94 63.8
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 1.4e-20 102.8 94 61.7
CSS0037511 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 1.4e-20 102.8 99 62.6
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 60.6
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 59.6
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 59.6
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 59.6
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 59.6
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 1.9e-20 102.4 94 59.6
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 1.9e-20 102.4 95 65.3
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 3.2e-20 101.7 94 63.8
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 4.2e-20 101.3 95 64.2
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 1.6e-19 99.4 94 63.8
TWI34G0747 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.6e-19 99.4 94 62.8
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 2.1e-19 99.0 94 64.9
HanXRQChr02g0050601 Helianthus annuus HOM05D007429 ORTHO05D003505 3.5e-19 98.2 96 62.5
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 4.6e-19 97.8 94 60.6
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 7.9e-19 97.1 94 59.6
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 7.9e-19 97.1 83 71.1
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.0e-18 96.7 85 67.1
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 1.8e-18 95.9 94 59.6
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 2.3e-18 95.5 94 58.5
CARHR187590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.0e-18 95.1 94 60.6
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 5.1e-18 94.4 96 60.4
Glyma.04G084800 Glycine max HOM05D007429 ORTHO05D003505 5.1e-18 94.4 94 59.6
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 5.1e-18 94.4 92 58.7
AUR62009266 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.1e-17 93.2 96 58.3
AUR62042440 Chenopodium quinoa HOM05D007429 ORTHO05D003505 1.1e-17 93.2 96 58.3
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 1.1e-17 93.2 83 66.3
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.9e-17 92.4 85 64.7
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 7.4e-17 90.5 83 62.7
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 7.4e-17 90.5 83 65.1
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 9.7e-17 90.1 118 52.5
Thhalv10005203m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 9.7e-17 90.1 94 58.5
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.6e-16 89.4 83 61.4
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.8e-16 88.6 83 65.1
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 3.7e-16 88.2 83 65.1
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 8.2e-16 87.0 118 49.2
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 8.2e-16 87.0 94 60.6
SGA_v2.0_scaffold163G38070 Striga asiatica HOM05D007429 ORTHO05D003505 1.4e-15 86.3 131 44.3
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.8e-15 85.9 85 61.2
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.4e-15 85.5 97 60.8
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 4.1e-15 84.7 85 62.4
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 9.0e-15 83.6 84 61.9
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 1.2e-14 83.2 96 54.2
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 2.0e-14 82.4 83 63.9
Migut.E01531 Erythranthe guttata HOM05D007429 ORTHO05D003505 7.7e-14 80.5 94 52.1
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.7e-13 79.3 83 54.2
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 2.9e-13 78.6 78 62.8
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 2.9e-13 78.6 83 54.2
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 2.9e-13 78.6 83 54.2
Manes.07G073601 Manihot esculenta HOM05D007429 ORTHO05D003505 3.8e-13 78.2 79 62.0
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 5.0e-13 77.8 83 56.6
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 5.0e-13 77.8 83 56.6
Cfa013373 Carpinus fangiana HOM05D007429 ORTHO05D003505 6.5e-13 77.4 63 65.1
CDE02G4418 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 8.5e-13 77.0 94 55.3
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 8.5e-13 77.0 91 57.1
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.1e-12 76.6 85 55.3
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 1.4e-12 76.3 95 52.6
DCAR_000754 Daucus carota HOM05D002792 ORTHO05D003039 1.9e-12 75.9 51 72.5
Lalb_Chr08g0243031 Lupinus albus HOM05D007429 ORTHO05D003505 1.9e-12 75.9 51 74.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 2.5e-12 75.5 86 59.3
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 2.5e-12 75.5 86 54.7
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 3.2e-12 75.1 94 56.4
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 5.5e-12 74.3 91 59.3
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 9.4e-12 73.6 82 54.9
VMungo1309G0862 Vigna mungo HOM05D007429 ORTHO05D003505 2.1e-11 72.4 79 58.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 6.7e-10 67.4 107 45.8
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.5e-09 66.2 109 41.3
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.5e-09 65.5 109 41.3
arahy.Tifrunner.gnm1.ann1.QV68FE Arachis hypogaea HOM05D007429 ORTHO05D003505 5.7e-09 64.3 88 48.9
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 1.7e-08 62.8 109 42.2
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 2.2e-08 62.4 46 67.4
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 6.3e-08 60.8 104 43.3
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 8.2e-08 60.5 94 45.7
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 1.4e-07 59.7 102 43.1
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.4e-07 58.9 107 40.2
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 4.1e-07 58.2 67 52.2
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 4.1e-07 58.2 105 43.8
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 5.3e-07 57.8 103 44.7
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 5.3e-07 57.8 105 40.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.3e-07 57.8 109 39.4
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.9e-07 57.4 101 41.6
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 9.1e-07 57.0 93 44.1
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 9.1e-07 57.0 103 42.7
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 9.1e-07 57.0 100 39.0
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 1.2e-06 56.6 109 40.4
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.2e-06 56.6 106 40.6
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.2e-06 56.6 106 40.6
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.2e-06 56.6 107 38.3
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 1.5e-06 56.2 102 40.2
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.5e-06 56.2 101 41.6
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 2.0e-06 55.8 84 42.9
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 2.0e-06 55.8 105 41.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 2.6e-06 55.5 86 44.2
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 2.6e-06 55.5 86 44.2
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 2.6e-06 55.5 105 40.0
HPP92_009091 Vanilla planifolia HOM05D007429 ORTHO05D003505 2.6e-06 55.5 45 66.7
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 3.4e-06 55.1 109 39.4
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 3.4e-06 55.1 101 40.6
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 4.5e-06 54.7 86 44.2
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 5.9e-06 54.3 100 41.0
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 7.7e-06 53.9 109 40.4
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 7.7e-06 53.9 92 41.3
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 7.7e-06 53.9 98 39.8
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 7.7e-06 53.9 94 35.1


User provided reference genes

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