Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00432 Eucalyptus grandis HOM05D002291 ORTHO05D002496 5.0e-47 190.7 90 100.0
Eucgr.C00431 Eucalyptus grandis HOM05D002291 ORTHO05D002496 2.7e-24 115.2 80 67.5
Eucgr.C00430 Eucalyptus grandis HOM05D002291 ORTHO05D002496 3.0e-23 111.7 72 72.2
Cfa020886 Carpinus fangiana HOM05D002291 ORTHO05D002496 2.9e-18 95.1 93 55.9
Eucgr.C00433 Eucalyptus grandis HOM05D002291 ORTHO05D002496 2.9e-18 95.1 77 58.4
Solyc07g007080.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 4.9e-18 94.4 79 55.7
COL.COLO4_24095 Corchorus olitorius HOM05D002291 ORTHO05D002496 2.4e-17 92.0 83 56.6
Haze_19315 Corylus avellana HOM05D002291 ORTHO05D002496 3.2e-17 91.7 77 57.1
Cpa.g.sc46.89 Carica papaya HOM05D002291 ORTHO05D002496 4.2e-17 91.3 82 54.9
PGSC0003DMG400030739 Solanum tuberosum HOM05D002291 ORTHO05D002496 1.2e-16 89.7 79 53.2
Actinidia04248 Actinidia chinensis HOM05D002291 ORTHO05D002496 2.1e-16 89.0 88 51.1
Thecc.09G142200 Theobroma cacao HOM05D002291 ORTHO05D002496 2.7e-16 88.6 80 57.5
PGSC0003DMG400030749 Solanum tuberosum HOM05D002291 ORTHO05D002496 3.5e-16 88.2 79 54.4
DCAR_014929 Daucus carota HOM05D002291 ORTHO05D002496 6.0e-16 87.4 79 51.9
Peaxi162Scf00347g00011 Petunia axillaris HOM05D002291 ORTHO05D002496 7.8e-16 87.0 79 53.2
Potri.006G189700 Populus trichocarpa HOM05D002291 ORTHO05D002496 7.8e-16 87.0 79 55.7
Phvul.003G175000 Phaseolus vulgaris HOM05D002291 ORTHO05D002496 1.3e-15 86.3 87 51.7
RcHm_v2.0_Chr2g0086641 Rosa chinensis HOM05D002291 ORTHO05D002496 1.7e-15 85.9 72 55.6
Haze_18941 Corylus avellana HOM05D002291 ORTHO05D002496 2.3e-15 85.5 76 55.3
Migut.K00373 Erythranthe guttata HOM05D002291 ORTHO05D002496 2.3e-15 85.5 81 53.1
Peaxi162Scf00347g00021 Petunia axillaris HOM05D002291 ORTHO05D002496 3.0e-15 85.1 89 51.7
Migut.K00370 Erythranthe guttata HOM05D002291 ORTHO05D002496 3.9e-15 84.7 87 50.6
Glyma.13G157100 Glycine max HOM05D002291 ORTHO05D002496 3.9e-15 84.7 88 52.3
Nitab4.5_0005384g0020 Nicotiana tabacum HOM05D002291 ORTHO05D002496 5.1e-15 84.3 80 52.5
DCAR_014925 Daucus carota HOM05D002291 ORTHO05D002496 6.6e-15 84.0 88 46.6
Hma1.2p1_0182F.1_g080530 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 8.7e-15 83.6 83 53.0
CANSAT11G1356 Cannabis sativa HOM05D002291 ORTHO05D002496 1.1e-14 83.2 74 58.1
Nitab4.5_0001151g0160 Nicotiana tabacum HOM05D002291 ORTHO05D002496 1.1e-14 83.2 80 51.2
Peaxi162Scf00347g00003 Petunia axillaris HOM05D002291 ORTHO05D002496 1.1e-14 83.2 79 53.2
Migut.K00374 Erythranthe guttata HOM05D002291 ORTHO05D002496 1.5e-14 82.8 79 53.2
Gohir.D13G208600 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.9e-14 82.4 91 56.0
Manes.14G139301 Manihot esculenta HOM05D002291 ORTHO05D002496 1.9e-14 82.4 82 54.9
DCAR_014926 Daucus carota HOM05D002291 ORTHO05D002496 2.5e-14 82.0 85 45.9
DCAR_014927 Daucus carota HOM05D002291 ORTHO05D002496 2.5e-14 82.0 85 45.9
DCAR_014928 Daucus carota HOM05D002291 ORTHO05D002496 2.5e-14 82.0 85 45.9
Gohir.A13G203300 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.5e-14 82.0 91 56.0
Nitab4.5_0001021g0030 Nicotiana tabacum HOM05D002291 ORTHO05D002496 2.5e-14 82.0 79 54.4
Gorai.013G237700 Gossypium raimondii HOM05D002291 ORTHO05D002496 4.3e-14 81.3 91 54.9
Gohir.D06G048932 Gossypium hirsutum HOM05D002291 ORTHO05D002496 5.6e-14 80.9 77 53.2
Gorai.010G055400 Gossypium raimondii HOM05D002291 ORTHO05D002496 5.6e-14 80.9 77 53.2
FAN26G0066 Fragaria x ananassa HOM05D002291 ORTHO05D002496 9.6e-14 80.1 71 56.3
Gohir.A06G049366 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.1e-13 79.0 77 53.2
Gohir.A06G049449 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.1e-13 79.0 77 54.5
RcHm_v2.0_Chr2g0086591 Rosa chinensis HOM05D002291 ORTHO05D002496 2.1e-13 79.0 78 53.8
Migut.K00372 Erythranthe guttata HOM05D002291 ORTHO05D002496 2.8e-13 78.6 78 48.7
Glyma.17G104700 Glycine max HOM05D002291 ORTHO05D002496 2.8e-13 78.6 78 51.3
Gohir.D06G048900 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.8e-13 78.6 78 51.3
Gorai.010G055100 Gossypium raimondii HOM05D002291 ORTHO05D002496 2.8e-13 78.6 78 51.3
FAN28G2256 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.6e-13 78.2 71 53.5
Gohir.A06G049200 Gossypium hirsutum HOM05D002291 ORTHO05D002496 4.7e-13 77.8 78 50.0
FvH4_1g01640 Fragaria vesca HOM05D002291 ORTHO05D002496 6.2e-13 77.4 74 51.4
FvH4_1g01670 Fragaria vesca HOM05D002291 ORTHO05D002496 6.2e-13 77.4 77 51.9
Gohir.D06G049050 Gossypium hirsutum HOM05D002291 ORTHO05D002496 6.2e-13 77.4 76 51.3
QL02p091378 Quercus lobata HOM05D002291 ORTHO05D002496 6.2e-13 77.4 94 46.8
Gohir.D06G049075 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.1e-12 76.6 80 52.5
Gorai.010G055800 Gossypium raimondii HOM05D002291 ORTHO05D002496 1.1e-12 76.6 80 52.5
FAN23G1656 Fragaria x ananassa HOM05D002291 ORTHO05D000222 1.4e-12 76.3 73 54.8
Gorai.010G055700 Gossypium raimondii HOM05D002291 ORTHO05D002496 1.4e-12 76.3 76 50.0
COL.COLO4_24090 Corchorus olitorius HOM05D002291 ORTHO05D002496 1.8e-12 75.9 77 54.5
Manes.14G139050 Manihot esculenta HOM05D002291 ORTHO05D002496 2.4e-12 75.5 78 51.3
RcHm_v2.0_Chr2g0086581 Rosa chinensis HOM05D002291 ORTHO05D002496 4.0e-12 74.7 72 52.8
Gohir.D06G049025 Gossypium hirsutum HOM05D002291 ORTHO05D002496 6.9e-12 73.9 80 51.2
Gorai.010G055600 Gossypium raimondii HOM05D002291 ORTHO05D002496 6.9e-12 73.9 80 51.2
Medtr4g116640 Medicago truncatula HOM05D002291 ORTHO05D002496 6.9e-12 73.9 77 49.4
COL.COLO4_24097 Corchorus olitorius HOM05D002291 ORTHO05D002496 9.0e-12 73.6 71 52.1
Medtr4g116620 Medicago truncatula HOM05D002291 ORTHO05D002496 9.0e-12 73.6 77 49.4
RcHm_v2.0_Chr2g0086491 Rosa chinensis HOM05D002291 ORTHO05D002496 9.0e-12 73.6 76 48.7
Ciclev10010646m.g Citrus clementina HOM05D002291 ORTHO05D002496 1.2e-11 73.2 79 51.9
FAN28G2220 Fragaria x ananassa HOM05D002291 ORTHO05D002496 1.2e-11 73.2 83 44.6
Oeu040786.1 Olea europaea HOM05D002291 ORTHO05D002496 1.2e-11 73.2 80 48.8
FAN28G1283 Fragaria x ananassa HOM05D002291 ORTHO05D002496 1.5e-11 72.8 85 43.5
QL02p091368 Quercus lobata HOM05D002291 ORTHO05D002496 1.5e-11 72.8 79 50.6
FAN19G2875 Fragaria x ananassa HOM05D002291 ORTHO05D002496 2.0e-11 72.4 84 46.4
Gohir.D06G048866 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.0e-11 72.4 79 51.9
Gorai.010G055300 Gossypium raimondii HOM05D002291 ORTHO05D002496 2.0e-11 72.4 79 51.9
Dinv41421 Davidia involucrata HOM05D002291 ORTHO05D002496 2.6e-11 72.0 50 68.0
FAN23G0828 Fragaria x ananassa HOM05D002291 ORTHO05D002496 2.6e-11 72.0 83 44.6
Gohir.A06G049700 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.6e-11 72.0 74 52.7
Nitab4.5_0001021g0010 Nicotiana tabacum HOM05D002291 ORTHO05D002496 2.6e-11 72.0 54 59.3
Prupe.7G254200 Prunus persica HOM05D002291 ORTHO05D002496 2.6e-11 72.0 70 57.1
Solyc07g007100.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 3.4e-11 71.6 80 48.8
Hma1.2p1_1784F.1_g302180 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 5.8e-11 70.9 74 51.4
Hma1.2p1_2402F.1_g321405 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 5.8e-11 70.9 74 51.4
Prupe.7G254100 Prunus persica HOM05D002291 ORTHO05D002496 5.8e-11 70.9 74 54.1
RcHm_v2.0_Chr2g0086601 Rosa chinensis HOM05D002291 ORTHO05D002496 7.6e-11 70.5 76 51.3
FAN19G2591 Fragaria x ananassa HOM05D002291 ORTHO05D002496 9.9e-11 70.1 72 50.0
RcHm_v2.0_Chr2g0086611 Rosa chinensis HOM05D002291 ORTHO05D002496 9.9e-11 70.1 82 50.0
FvH4_1g01650 Fragaria vesca HOM05D002291 ORTHO05D002496 1.3e-10 69.7 76 46.1
Potri.018G113901 Populus trichocarpa HOM05D002291 ORTHO05D002496 1.3e-10 69.7 71 46.5
Prupe.7G253900 Prunus persica HOM05D002291 ORTHO05D002496 1.3e-10 69.7 75 50.7
Aqoxy7G03523 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.7e-10 69.3 79 44.3
Prupe.7G254000 Prunus persica HOM05D002291 ORTHO05D002496 1.7e-10 69.3 76 51.3
TPR.G15806 Trifolium pratense HOM05D002291 ORTHO05D002496 2.9e-10 68.6 77 44.2
FvH4_1g01630 Fragaria vesca HOM05D002291 ORTHO05D002496 3.8e-10 68.2 77 48.1
Gohir.D06G048766 Gossypium hirsutum HOM05D002291 ORTHO05D002496 3.8e-10 68.2 57 57.9
MBI15_g31410_MAGBIO Magnolia biondii HOM05D002291 ORTHO05D002496 3.8e-10 68.2 86 46.5
Prupe.7G254300 Prunus persica HOM05D002291 ORTHO05D002496 3.8e-10 68.2 54 59.3
Hma1.2p1_0182F.1_g080520 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 4.9e-10 67.8 56 58.9
Prupe.7G254500 Prunus persica HOM05D002291 ORTHO05D002496 8.4e-10 67.0 61 57.4
Aqoxy6G00792 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.1e-09 66.6 57 49.1
Aqoxy7G03527 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.1e-09 66.6 79 40.5
FvH4_1g01620 Fragaria vesca HOM05D002291 ORTHO05D002496 1.1e-09 66.6 72 48.6
PGR102G1132 Punica granatum HOM05D002291 ORTHO05D002496 1.1e-09 66.6 76 48.7
MD15G1159300 Malus domestica HOM05D002291 ORTHO05D002496 1.4e-09 66.2 53 60.4
Aqoxy7G03977 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.9e-09 65.9 80 41.2
Nn8g39724 Nelumbo nucifera HOM05D002291 ORTHO05D002496 2.4e-09 65.5 58 55.2
Prupe.1G525100 Prunus persica HOM05D002291 ORTHO05D002496 2.4e-09 65.5 74 50.0
MD15G1158700 Malus domestica HOM05D002291 ORTHO05D002496 3.2e-09 65.1 74 44.6
Nn2g12256 Nelumbo nucifera HOM05D002291 ORTHO05D002496 3.2e-09 65.1 62 51.6
Migut.K00371 Erythranthe guttata HOM05D002291 ORTHO05D002496 5.4e-09 64.3 77 42.9
MD15G1159200 Malus domestica HOM05D002291 ORTHO05D002496 7.1e-09 63.9 55 58.2
TAR626G1664 Trochodendron aralioides HOM05D002291 ORTHO05D002496 7.1e-09 63.9 58 53.4
Atru.chr7.210 Acer truncatum HOM05D002291 ORTHO05D002496 9.3e-09 63.5 81 46.9
MD15G1159500 Malus domestica HOM05D002291 ORTHO05D002496 9.3e-09 63.5 73 47.9
ATR0629G115 Amborella trichopoda HOM05D002291 ORTHO05D002496 1.2e-08 63.2 83 39.8
Aqoxy7G03526 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.2e-08 63.2 73 46.6
Prupe.7G254400 Prunus persica HOM05D002291 ORTHO05D002496 1.6e-08 62.8 75 48.0
ECA236G3823 Erigeron canadensis HOM05D000006 ORTHO05D010593 2.1e-08 62.4 56 46.4
Solyc07g007070.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 2.1e-08 62.4 72 43.1
Solyc12g010400.2 Solanum lycopersicum HOM05D002291 ORTHO05D002496 2.1e-08 62.4 83 43.4
Sopen12g005420 Solanum pennellii HOM05D002291 ORTHO05D002496 2.1e-08 62.4 83 43.4
Gohir.A06G049615 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.7e-08 62.0 83 47.0
Peaxi162Scf00177g00073 Petunia axillaris HOM05D002291 ORTHO05D002496 2.7e-08 62.0 83 42.2
Dinv43189 Davidia involucrata HOM05D002291 ORTHO05D002496 3.5e-08 61.6 82 43.9
Hma1.2p1_0182F.1_g080570 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 3.5e-08 61.6 73 42.5
Aqoxy6G02828 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 6.0e-08 60.8 78 34.6
Gorai.004G275000 Gossypium raimondii HOM05D002291 ORTHO05D002496 6.0e-08 60.8 91 39.6
MD15G1158800 Malus domestica HOM05D002291 ORTHO05D002496 6.0e-08 60.8 84 40.5
FAN23G1547 Fragaria x ananassa HOM05D002291 ORTHO05D002496 7.8e-08 60.5 52 57.7
PGSC0003DMG401007888 Solanum tuberosum HOM05D002291 ORTHO05D002496 1.0e-07 60.1 78 39.7
CsaV3_1G028530 Cucumis sativus L. HOM05D002291 ORTHO05D002496 1.3e-07 59.7 78 41.0
Ciclev10010215m.g Citrus clementina HOM05D002291 ORTHO05D002496 1.7e-07 59.3 71 47.9
Peaxi162Scf00347g00017 Petunia axillaris HOM05D002291 ORTHO05D002496 1.7e-07 59.3 83 41.0
Nitab4.5_0005330g0060 Nicotiana tabacum HOM05D002291 ORTHO05D002496 2.3e-07 58.9 83 41.0
Glyma.15G202600 Glycine max HOM05D002291 ORTHO05D002496 3.0e-07 58.5 79 35.4
Gohir.A08G237300 Gossypium hirsutum HOM05D002291 ORTHO05D002496 3.0e-07 58.5 91 37.4
Oeu026098.1 Olea europaea HOM05D002291 ORTHO05D002496 3.0e-07 58.5 82 39.0
PSO832G3277 Papaver somniferum HOM05D002291 ORTHO05D002496 3.0e-07 58.5 40 57.5
SalBow1G0319 Salvia bowleyana HOM05D002291 ORTHO05D002496 3.0e-07 58.5 57 45.6
ECA240G4705 Erigeron canadensis HOM05D002291 ORTHO05D002496 3.9e-07 58.2 79 38.0
Nn2g12255 Nelumbo nucifera HOM05D002291 ORTHO05D002496 3.9e-07 58.2 79 40.5
Nn8g39725 Nelumbo nucifera HOM05D002850 ORTHO05D002496 3.9e-07 58.2 59 49.2
CiPaw.15G181200 Carya illinoinensis HOM05D002291 ORTHO05D002496 5.1e-07 57.8 61 52.5
Duzib168G2034 Durio zibethinus HOM05D002291 ORTHO05D002496 5.1e-07 57.8 74 40.5
Migut.K00369 Erythranthe guttata HOM05D002291 ORTHO05D002496 5.1e-07 57.8 67 44.8
FvH4_1g01700 Fragaria vesca HOM05D002291 ORTHO05D002496 5.1e-07 57.8 70 47.1
Gohir.D08G257900 Gossypium hirsutum HOM05D002291 ORTHO05D002496 5.1e-07 57.8 83 39.8
Potri.018G113700 Populus trichocarpa HOM05D002291 ORTHO05D002496 5.1e-07 57.8 80 40.0
CSS0042018 Camellia sinensis var. sinensis HOM05D002291 ORTHO05D002496 6.6e-07 57.4 80 37.5
CSS0043235 Camellia sinensis var. sinensis HOM05D002291 ORTHO05D002496 6.6e-07 57.4 80 37.5
Nitab4.5_0001751g0020 Nicotiana tabacum HOM05D002291 ORTHO05D002496 6.6e-07 57.4 83 38.6
CsaV3_1G028520 Cucumis sativus L. HOM05D002291 ORTHO05D002496 1.1e-06 56.6 71 47.9
Cfa020885 Carpinus fangiana HOM05D002291 ORTHO05D002496 1.5e-06 56.2 61 45.9
Nitab4.5_0001151g0070 Nicotiana tabacum HOM05D002291 ORTHO05D002496 1.5e-06 56.2 77 41.6
Oeu040780.1 Olea europaea HOM05D002291 ORTHO05D002496 1.9e-06 55.8 85 38.8
Oeu052182.1 Olea europaea HOM05D002291 ORTHO05D002496 1.9e-06 55.8 87 42.5
Sabra06G0145800 Salix brachista HOM05D002291 ORTHO05D002496 1.9e-06 55.8 80 40.0
PGSC0003DMG400030741 Solanum tuberosum HOM05D002291 ORTHO05D002496 1.9e-06 55.8 82 40.2
PGSC0003DMG400030742 Solanum tuberosum HOM05D002291 ORTHO05D002496 1.9e-06 55.8 82 40.2
CiPaw.15G181400 Carya illinoinensis HOM05D002291 ORTHO05D002496 2.5e-06 55.5 63 47.6
Potri.006G189600 Populus trichocarpa HOM05D002291 ORTHO05D002496 2.5e-06 55.5 77 40.3
Solyc07g007050.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 2.5e-06 55.5 82 39.0
CAN.G518.9 Capsicum annuum HOM05D002291 ORTHO05D002496 3.3e-06 55.1 74 39.2
HanXRQChr06g0182051 Helianthus annuus HOM05D002291 ORTHO05D002496 3.3e-06 55.1 72 40.3
Prupe.7G253800 Prunus persica HOM05D002291 ORTHO05D002496 3.3e-06 55.1 60 43.3
Glyma.09G094900 Glycine max HOM05D002291 ORTHO05D002496 4.3e-06 54.7 80 36.2
Lsat_1_v5_gn_8_60480 Lactuca sativa HOM05D002291 ORTHO05D002496 4.3e-06 54.7 69 43.5
Thecc.09G142300 Theobroma cacao HOM05D002291 ORTHO05D002496 4.3e-06 54.7 78 38.5
BcaC01g05064 Brassica carinata HOM05D002291 ORTHO05D002496 5.6e-06 54.3 61 44.3
BcaC01g05065 Brassica carinata HOM05D002291 ORTHO05D002496 5.6e-06 54.3 61 44.3
BolC3t15412H Brassica oleracea HOM05D002291 ORTHO05D002496 5.6e-06 54.3 61 44.3
Migut.J01277 Erythranthe guttata HOM05D002291 ORTHO05D002496 5.6e-06 54.3 54 40.7
MD15G1158600 Malus domestica HOM05D002291 ORTHO05D002496 5.6e-06 54.3 61 42.6
C03p30620 Brassica napus HOM05D002291 ORTHO05D002496 7.3e-06 53.9 59 45.8
Gohir.D13G208700 Gossypium hirsutum HOM05D002291 ORTHO05D002496 7.3e-06 53.9 81 37.0
Gorai.013G237800 Gossypium raimondii HOM05D002291 ORTHO05D002496 7.3e-06 53.9 81 37.0
Oeu038253.1 Olea europaea HOM05D002291 ORTHO05D002496 7.3e-06 53.9 73 42.5
Migut.J01276 Erythranthe guttata HOM05D002291 ORTHO05D189699 9.6e-06 53.5 72 44.4
Migut.K00368 Erythranthe guttata HOM05D002291 ORTHO05D002496 9.6e-06 53.5 46 50.0
MD15G1158900 Malus domestica HOM05D002291 ORTHO05D002496 9.6e-06 53.5 58 48.3
MD15G1159000 Malus domestica HOM05D002291 ORTHO05D002496 9.6e-06 53.5 58 48.3
Sabra18G0096700 Salix brachista HOM05D002291 ORTHO05D002496 9.6e-06 53.5 60 48.3


User provided reference genes

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