Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 6.4e-35 150.2 76 100.0
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 7.8e-17 90.1 66 69.7
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.7e-16 89.0 73 64.4
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 3.0e-16 88.2 61 70.5
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 6.6e-16 87.0 61 68.9
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.1e-15 86.3 73 60.3
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.9e-15 85.5 71 62.0
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 3.3e-15 84.7 66 65.2
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 3.3e-15 84.7 61 68.9
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 3.3e-15 84.7 61 67.2
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.3e-15 84.3 73 60.3
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 4.3e-15 84.3 66 63.6
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 4.3e-15 84.3 65 63.1
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 9.5e-15 83.2 61 70.5
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 9.5e-15 83.2 61 70.5
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 9.5e-15 83.2 73 61.6
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 9.5e-15 83.2 69 62.3
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 9.5e-15 83.2 73 63.0
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 1.2e-14 82.8 64 60.9
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.2e-14 82.8 73 63.0
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-14 82.8 64 68.8
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-14 82.8 64 68.8
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.2e-14 82.8 64 68.8
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 1.2e-14 82.8 61 68.9
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.6e-14 82.4 61 67.2
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.6e-14 82.4 61 67.2
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 2.1e-14 82.0 72 59.7
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 2.1e-14 82.0 62 61.3
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 2.8e-14 81.6 61 67.2
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 3.6e-14 81.3 66 60.6
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 4.7e-14 80.9 67 61.2
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 4.7e-14 80.9 73 60.3
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 6.2e-14 80.5 70 60.0
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 8.1e-14 80.1 64 62.5
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.1e-14 80.1 61 68.9
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.4e-13 79.3 64 65.6
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 1.4e-13 79.3 76 53.9
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.8e-13 79.0 61 65.6
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 2.4e-13 78.6 69 58.0
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.1e-13 78.2 64 64.1
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 5.2e-13 77.4 72 58.3
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 6.8e-13 77.0 73 58.9
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 6.8e-13 77.0 73 58.9
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 6.8e-13 77.0 80 53.8
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 1.2e-12 76.3 62 54.8
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 1.2e-12 76.3 62 54.8
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.5e-12 75.9 73 57.5
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 1.5e-12 75.9 63 63.5
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 2.0e-12 75.5 73 57.5
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 2.0e-12 75.5 73 57.5
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 2.0e-12 75.5 73 57.5
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 2.0e-12 75.5 60 60.0
AL6G44970 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.6e-12 75.1 73 57.5
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 2.6e-12 75.1 71 56.3
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 3.4e-12 74.7 61 62.3
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.4e-12 74.7 64 56.2
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.4e-12 74.7 64 56.2
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 4.4e-12 74.3 73 54.8
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 5.8e-12 73.9 63 58.7
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 7.6e-12 73.6 64 56.2
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 7.6e-12 73.6 66 60.6
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 9.9e-12 73.2 63 60.3
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 1.3e-11 72.8 66 59.1
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 2.2e-11 72.0 73 56.2
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.2e-11 72.0 63 60.3
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 2.2e-11 72.0 63 60.3
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.9e-11 71.6 62 59.7
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 2.9e-11 71.6 73 53.4
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 3.8e-11 71.2 63 55.6
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 3.8e-11 71.2 64 60.9
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 3.8e-11 71.2 60 58.3
CARHR255710 Cardamine hirsuta HOM05D003524 ORTHO05D003988 4.9e-11 70.9 73 53.4
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 6.4e-11 70.5 64 57.8
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 6.4e-11 70.5 64 57.8
A09p28280 Brassica napus HOM05D003524 ORTHO05D003988 8.4e-11 70.1 73 54.8
BraA09t38397Z Brassica rapa HOM05D003524 ORTHO05D003988 8.4e-11 70.1 73 54.8
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 8.4e-11 70.1 63 57.1
BcaC03g16382 Brassica carinata HOM05D003524 ORTHO05D003988 1.9e-10 68.9 73 53.4
C02p42080 Brassica napus HOM05D003524 ORTHO05D003988 1.9e-10 68.9 73 53.4
BolC2t10246H Brassica oleracea HOM05D003524 ORTHO05D003988 1.9e-10 68.9 73 53.4
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 1.9e-10 68.9 62 59.7
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 2.4e-10 68.6 60 61.7
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 2.4e-10 68.6 63 58.7
Sp6g06610 Schrenkiella parvula HOM05D003524 ORTHO05D003988 2.4e-10 68.6 73 54.8
BcaC04g21087 Brassica carinata HOM05D003524 ORTHO05D003988 4.1e-10 67.8 73 53.4
C09p35850 Brassica napus HOM05D003524 ORTHO05D003988 4.1e-10 67.8 73 53.4
BolC9t56418H Brassica oleracea HOM05D003524 ORTHO05D003988 4.1e-10 67.8 73 53.4
BcaB05g23874 Brassica carinata HOM05D003524 ORTHO05D003988 5.4e-10 67.4 73 54.8
A02p26460 Brassica napus HOM05D003524 ORTHO05D003988 5.4e-10 67.4 73 53.4
BraA02t07649Z Brassica rapa HOM05D003524 ORTHO05D003988 5.4e-10 67.4 73 53.4
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 5.4e-10 67.4 63 55.6
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 5.4e-10 67.4 58 53.4
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 5.4e-10 67.4 63 58.7
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 5.4e-10 67.4 71 49.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 5.4e-10 67.4 60 58.3
BcaB01g01557 Brassica carinata HOM05D003524 ORTHO05D003988 7.1e-10 67.0 73 52.1
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 7.1e-10 67.0 63 57.1
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 7.1e-10 67.0 63 57.1
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 7.1e-10 67.0 63 57.1
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 7.1e-10 67.0 63 57.1
Carub.0006s2963 Capsella rubella HOM05D003524 ORTHO05D003988 7.1e-10 67.0 73 53.4
Thhalv10029345m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 7.1e-10 67.0 73 52.1
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 9.2e-10 66.6 63 57.1
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 9.2e-10 66.6 63 55.6
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 1.2e-09 66.2 62 56.5
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.6e-09 65.9 68 58.8
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 1.6e-09 65.9 63 55.6
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 1.6e-09 65.9 61 52.5
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 2.1e-09 65.5 63 55.6
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 2.1e-09 65.5 63 55.6
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 2.1e-09 65.5 64 53.1
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 2.1e-09 65.5 62 54.8
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.1e-09 65.5 60 51.7
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 2.1e-09 65.5 63 55.6
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 2.1e-09 65.5 66 50.0
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 2.7e-09 65.1 63 55.6
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 2.7e-09 65.1 63 55.6
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-09 65.1 63 55.6
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 2.7e-09 65.1 63 55.6
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 2.7e-09 65.1 63 55.6
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.7e-09 65.1 64 54.7
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 2.7e-09 65.1 63 55.6
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 3.5e-09 64.7 60 51.7
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.5e-09 64.7 63 55.6
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 4.6e-09 64.3 63 55.6
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 4.6e-09 64.3 63 55.6
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 4.6e-09 64.3 63 54.0
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 4.6e-09 64.3 63 52.4
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 4.6e-09 64.3 61 55.7
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 4.6e-09 64.3 63 52.4
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 4.6e-09 64.3 60 56.7
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 6.0e-09 63.9 63 54.0
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 6.0e-09 63.9 63 54.0
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 6.0e-09 63.9 60 55.0
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 7.8e-09 63.5 63 55.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 1.0e-08 63.2 63 52.4
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 1.0e-08 63.2 63 55.6
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.0e-08 63.2 73 50.7
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.0e-08 63.2 63 52.4
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.0e-08 63.2 63 49.2
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.3e-08 62.8 73 50.7
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 1.3e-08 62.8 73 50.7
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 1.7e-08 62.4 63 54.0
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.7e-08 62.4 63 52.4
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 1.7e-08 62.4 63 55.6
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.7e-08 62.4 64 56.2
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.3e-08 62.0 64 56.2
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 2.3e-08 62.0 60 50.0
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 3.0e-08 61.6 70 51.4
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 3.0e-08 61.6 63 50.8
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 3.9e-08 61.2 59 52.5
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.9e-08 61.2 60 55.0
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 5.1e-08 60.8 63 52.4
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 6.6e-08 60.5 63 52.4
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 6.6e-08 60.5 61 49.2
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 6.6e-08 60.5 60 50.0
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 8.7e-08 60.1 63 50.8
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 1.1e-07 59.7 59 49.2
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 1.1e-07 59.7 71 49.3
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 1.5e-07 59.3 60 48.3
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.5e-07 59.3 69 49.3
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 1.5e-07 59.3 63 54.0
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.9e-07 58.9 62 50.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.9e-07 58.9 63 54.0
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.5e-07 58.5 63 54.0
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 2.5e-07 58.5 63 50.8
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 2.5e-07 58.5 63 46.0
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.3e-07 57.0 48 62.5
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 9.6e-07 56.6 62 51.6
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.2e-06 56.2 48 64.6
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 1.6e-06 55.8 50 56.0
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 1.6e-06 55.8 63 52.4
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 2.1e-06 55.5 63 50.8
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 2.1e-06 55.5 63 50.8
DCAR_019373 Daucus carota HOM05D003524 ORTHO05D003988 8.1e-06 53.5 76 42.1


User provided reference genes

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